RLG00000003951

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0015618
Physical Location & Seq
Reverse (-)
54663025 .. 54665381
2357 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003951

Sequence Viewer

Length: 1392 bp
ATGATGATGGTGAGAGGAGTGAACGGCGGAGAGTCCAGAAGTGGGAGCAACGCTTTGGATACTATCAACGCAGCTGCTTCGGCTATCGCAGCGGCCGAGAGCCGTGTTCCTCAAGCCACCGTGCAGAAGAGAAGATGGGCCAAAGGCTGGAGTGTCTATTCGTGTTTCGGCTTTCAAAGACATAGGAAGAGAATTGGACATGCTGTCATTCTTCCAGAAACAAGTTCCTCTGGAGGTGGTGACTCTAGAGCCGAAAATCCAACCCAAGCACCTTCCATTGTACTTCCCTTTGTTGCACCTCCGTCCTCTCCTGCTTCGTTTCTTCAATCAGAACCTCCTTCTGCCATGCAATCACCAGCTGGTTTCAAATCTTCTATTTCTGCTAGTATGTACTCCCCCGGGCCTGCTTCGATATTTGCCATTGGTCCTTATGCTCACGAAACCCAGTTGGTCTCACCTCCCGTTTTCTCAACCTTTACTACTGAACCATCAACTGCTCCATTCACTCCTCCTGCCGAGTCTGTTCACTTGACTACACCTTCGTCACCTGAGGTTCCATTTGCTCAGCTGCTTGATCCTAACTTTAGGAATGGTGAAGGTGGTCAGAGATACCCATTATCTCACTATGAATTTCAGTCTTACCAACTGTACCCTGGAAGCCCGGTTGGTCAGCTTATATCACCAAGCTCAGGCATCTCAGGCTCTGGTACTTCTTCTCCTTTCCTTGACAGCGAGTTTGCTTCTGGTGGTCGTCACTTCCTGGAGTTCCGAACAGGTGAAGCTCCTAAACTCTTGAACCTTGATATTCTCTTCACCCGTGATTGGGGTTCAAGACTATGTTCTGGTTCTGTGACTCCTGATGCTGCAAAATCTACATCTTCCGATGGTTTTACTCTAAAACCGCATACCCCTGAAGGTGTATTAAAGGCAGGATCAAACAGTCAACGCAGAAATGATGATGTTTCCATCGGTCATAGAGTCTCGTTTGAGTTAAGTGATGAAGAAGTTGTAAGATGTGTGGACAAGAAGCCGGTAGCATTAGCTGAAGCTGTATCAACATCTCTACAAAGTACAGAAAAGGCTGAAGGAGAAGAAGGTCCTAGTCAAGAAGTGAGTAGTAGTCATGAGTGCCCTGTTGTTGACACATCCAATGAATCATCAGAAAAGGCTGTAGGAGGAGATGGGGAGGAGGCATTCCACCGGCATCAGAAGGAGCGATCCATCACACTTGGTTCTGCTAAGGAATTCAATTTCGACAATGCAGATGGAGGAGATTCTGGCACCTCTAATATCAGCACTGACTGGTGGGCGAATGAGAAGGCTGTTTCGAACGAGAATGAGCAATCAAAGAATTGGTCTTTCTTCCCTATGATACAGCGGGGCGTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

464

Amino Acids

49.35

Weight (kDa)

5.32

Isoelectric Point (pI)

61.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015618)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02720
malus_domestica MD06G1086300.v1.1 MD14G1107500.v1.1
prunus_persica Prupe.5G102900_v2.0.a1
pyrus_communis pycom06g08290 pycom14g10250
rosa_chinensis RchiOBHm_Chr7g0197211
rosa_laevigata RLG00000003951
rosa_multiflora Rmu_ssc0000465.1_g000014
rosa_roxburghii Rroxscaffold_3G00258590
rosa_rugosa Rorug07G0038700
rosa_samantha Rh7AG163300 Rh7BG165300 Rh7CG171300 Rh7DG164700
rosa_wichuraiana Rw7G014260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1280
AccB7I CCANNNNNTGG 1 cut(s) 147
AciI CCGC 4 cut(s) 27, 92, 902, 1378
AclWI GGATC 3 cut(s) 569, 940, 1212
AcoI YGGCCR 1 cut(s) 93
AcsI RAATTY 2 cut(s) 629, 1244
AcuI CTGAAG 3 cut(s) 933, 1065, 1104
AfaI GTAC 5 cut(s) 282, 392, 650, 709, 1072
AfiI CCNNNNNNNGG 5 cut(s) 42, 147, 689, 822, 823
AgsI TTSAA 6 cut(s) 176, 326, 367, 796, 831, 1249
AhdI GACNNNNNGTC 1 cut(s) 203
AjnI CCWGG 2 cut(s) 652, 759
AluBI AGCT 8 cut(s) 74, 359, 568, 673, 687, 782, 1043, 1049
AluI AGCT 8 cut(s) 74, 359, 568, 673, 687, 782, 1043, 1049
Alw26I GTCTC 2 cut(s) 457, 985
AlwI GGATC 3 cut(s) 569, 940, 1212
AlwNI CAGNNNCTG 1 cut(s) 704
Ama87I CYCGRG 1 cut(s) 398
AoxI GGCC 3 cut(s) 93, 138, 401
ApeKI GCWGC 5 cut(s) 71, 74, 89, 568, 863
ApoI RAATTY 2 cut(s) 629, 1244
ArsI GACNNNNNNTTYG 6 cut(s) 523, 555, 719, 751, 1340, 1372
AspS9I GGNCC 4 cut(s) 138, 401, 425, 1097
AsuC2I CCSGG 3 cut(s) 399, 400, 662
AsuHPI GGTGA 9 cut(s) 22, 251, 345, 447, 537, 605, 672, 788, 805
AsuII TTCGAA 1 cut(s) 1328
AvaI CYCGRG 1 cut(s) 398
AvaII GGWCC 2 cut(s) 425, 1097
AxyI CCTNAGG 1 cut(s) 549
BaeGI GKGCMC 1 cut(s) 1133
BanI GGYRCC 1 cut(s) 1280
BbvI GCAGC 5 cut(s) 61, 83, 101, 555, 850
BccI CCATC 7 cut(s) 129, 496, 878, 974, 1175, 1229, 1259
BceAI ACGGC 2 cut(s) 40, 87
BcgI CGANNNNNNTGC 2 cut(s) 60, 94
BciT130I CCWGG 2 cut(s) 654, 761
BciVI GTATCC 1 cut(s) 52
BcnI CCSGG 3 cut(s) 399, 400, 662
BcoDI GTCTC 2 cut(s) 457, 985
BfaI CTAG 3 cut(s) 246, 384, 1101
BfmI CTRYAG 1 cut(s) 1170
BfuI GTATCC 1 cut(s) 52
BisI GCNGC 6 cut(s) 72, 75, 90, 93, 569, 864
BlpI GCTNAGC 1 cut(s) 564
BlsI GCNGC 6 cut(s) 73, 76, 91, 94, 570, 865
Bme1390I CCNGG 5 cut(s) 399, 400, 654, 662, 761
Bme18I GGWCC 2 cut(s) 425, 1097
BmeRI GACNNNNNGTC 1 cut(s) 203
BmeT110I CYCGRG 1 cut(s) 398
BmgT120I GGNCC 4 cut(s) 138, 401, 425, 1097
BmiI GGNNCC 2 cut(s) 555, 1282
BmrFI CCNGG 5 cut(s) 399, 400, 654, 662, 761
BmrI ACTGGG 1 cut(s) 439
BmsI GCATC 3 cut(s) 702, 850, 1213
BmuI ACTGGG 1 cut(s) 439
BpmI CTGGAG 3 cut(s) 169, 252, 782
Bpu10I CCTNAGC 2 cut(s) 688, 1239
Bpu1102I GCTNAGC 1 cut(s) 564
Bpu14I TTCGAA 1 cut(s) 1328
BpuEI CTTGAG 1 cut(s) 96
BpuMI CCSGG 3 cut(s) 399, 400, 662
BsaI GGTCTC 1 cut(s) 457
BsaJI CCNNGG 3 cut(s) 397, 398, 652
BsaXI ACNNNNNCTCC 2 cut(s) 700, 730
Bsc4I CCNNNNNNNGG 5 cut(s) 42, 147, 689, 822, 823
Bse118I RCCGGY 2 cut(s) 1030, 1200
Bse1I ACTGG 2 cut(s) 445, 1307
Bse21I CCTNAGG 1 cut(s) 549
BseBI CCWGG 2 cut(s) 654, 761
BseDI CCNNGG 3 cut(s) 397, 398, 652
BseGI GGATG 1 cut(s) 1145
BseLI CCNNNNNNNGG 5 cut(s) 42, 147, 689, 822, 823
BseMII CTCAG 4 cut(s) 540, 578, 702, 711
BseNI ACTGG 2 cut(s) 445, 1307
BseRI GAGGAG 5 cut(s) 30, 498, 1191, 1202, 1284
BseSI GKGCMC 1 cut(s) 1133
BseX3I CGGCCG 1 cut(s) 93
BseXI GCAGC 5 cut(s) 61, 83, 101, 555, 850
BsgI GTGCAG 1 cut(s) 143
Bsh1285I CGRYCG 1 cut(s) 96
BshFI GGCC 3 cut(s) 95, 140, 403
BshNI GGYRCC 1 cut(s) 1280
BsiEI CGRYCG 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 398
BsiSI CCGG 4 cut(s) 399, 662, 1031, 1201
BslI CCNNNNNNNGG 5 cut(s) 42, 147, 689, 822, 823
BsmAI GTCTC 2 cut(s) 457, 985
BsmI GAATGC 1 cut(s) 1193
BsnI GGCC 3 cut(s) 95, 140, 403
Bso31I GGTCTC 1 cut(s) 457
BsoBI CYCGRG 1 cut(s) 398
Bsp119I TTCGAA 1 cut(s) 1328
Bsp1286I GDGCHC 1 cut(s) 1133
Bsp143I GATC 3 cut(s) 574, 932, 1217
Bsp1720I GCTNAGC 1 cut(s) 564
BspACI CCGC 4 cut(s) 27, 92, 902, 1378
BspANI GGCC 3 cut(s) 95, 140, 403
BspCNI CTCAG 4 cut(s) 541, 577, 701, 710
BspHI TCATGA 1 cut(s) 1123
BspLI GGNNCC 2 cut(s) 555, 1282
BspPI GGATC 3 cut(s) 569, 940, 1212
BspT104I TTCGAA 1 cut(s) 1328
BspT107I GGYRCC 1 cut(s) 1280
BspTNI GGTCTC 1 cut(s) 457
BsrFI RCCGGY 2 cut(s) 1030, 1200
BsrI ACTGG 2 cut(s) 445, 1307
BssAI RCCGGY 2 cut(s) 1030, 1200
BssECI CCNNGG 3 cut(s) 397, 398, 652
BssMI GATC 3 cut(s) 574, 932, 1217
Bst2UI CCWGG 2 cut(s) 654, 761
Bst4CI ACNGT 3 cut(s) 121, 648, 941
Bst6I CTCTTC 3 cut(s) 122, 182, 815
BstBI TTCGAA 1 cut(s) 1328
BstC8I GCNNGC 1 cut(s) 405
BstDEI CTNAG 5 cut(s) 549, 564, 688, 697, 1239
BstF5I GGATG 1 cut(s) 1145
BstKTI GATC 3 cut(s) 577, 935, 1220
BstMAI GTCTC 2 cut(s) 457, 985
BstMBI GATC 3 cut(s) 574, 932, 1217
BstMCI CGRYCG 1 cut(s) 96
BstMWI GCNNNNNNNGC 3 cut(s) 80, 89, 699
BstNI CCWGG 2 cut(s) 654, 761
BstNSI RCATGY 1 cut(s) 203
BstSCI CCNGG 5 cut(s) 397, 398, 652, 660, 759
BstSFI CTRYAG 1 cut(s) 1170
BstSLI GKGCMC 1 cut(s) 1133
BstV1I GCAGC 5 cut(s) 61, 83, 101, 555, 850
BstZI CGGCCG 1 cut(s) 93
Bsu36I CCTNAGG 1 cut(s) 549
BsuI GTATCC 1 cut(s) 52
BsuRI GGCC 3 cut(s) 95, 140, 403
BtsCI GGATG 1 cut(s) 1145
BtsIMutI CAGTG 1 cut(s) 1296
Cac8I GCNNGC 1 cut(s) 405
CaiI CAGNNNCTG 1 cut(s) 704
CciI TCATGA 1 cut(s) 1123
Cfr10I RCCGGY 2 cut(s) 1030, 1200
Cfr13I GGNCC 4 cut(s) 138, 401, 425, 1097
Cfr9I CCCGGG 1 cut(s) 398
Csp6I GTAC 5 cut(s) 281, 391, 649, 708, 1071
CviAII CATG 3 cut(s) 200, 346, 1124
CviQI GTAC 5 cut(s) 281, 391, 649, 708, 1071
DdeI CTNAG 5 cut(s) 549, 564, 688, 697, 1239
DpnI GATC 3 cut(s) 576, 934, 1219
DpnII GATC 3 cut(s) 574, 932, 1217
DriI GACNNNNNGTC 1 cut(s) 203
EaeI YGGCCR 1 cut(s) 93
EagI CGGCCG 1 cut(s) 93
Eam1104I CTCTTC 3 cut(s) 122, 182, 815
Eam1105I GACNNNNNGTC 1 cut(s) 203
EarI CTCTTC 3 cut(s) 122, 182, 815
EciI GGCGGA 1 cut(s) 42
EclXI CGGCCG 1 cut(s) 93
Eco31I GGTCTC 1 cut(s) 457
Eco47I GGWCC 2 cut(s) 425, 1097
Eco52I CGGCCG 1 cut(s) 93
Eco57I CTGAAG 3 cut(s) 933, 1065, 1104
Eco81I CCTNAGG 1 cut(s) 549
Eco88I CYCGRG 1 cut(s) 398
EcoO109I RGGNCCY 1 cut(s) 1097
EcoRI GAATTC 1 cut(s) 1244
EcoRII CCWGG 2 cut(s) 652, 759
FaeI CATG 3 cut(s) 203, 349, 1127
FatI CATG 3 cut(s) 199, 345, 1123
FauI CCCGC 1 cut(s) 1371
Fnu4HI GCNGC 6 cut(s) 72, 75, 90, 93, 569, 864
FokI GGATG 1 cut(s) 1132
Fsp4HI GCNGC 6 cut(s) 72, 75, 90, 93, 569, 864
FspBI CTAG 3 cut(s) 246, 384, 1101
GluI GCNGC 6 cut(s) 72, 75, 90, 93, 569, 864
GsuI CTGGAG 3 cut(s) 169, 252, 782
HaeIII GGCC 3 cut(s) 95, 140, 403
HapII CCGG 4 cut(s) 399, 662, 1031, 1201
Hin1II CATG 3 cut(s) 203, 349, 1127
HincII GTYRAC 2 cut(s) 944, 1141
HindII GTYRAC 2 cut(s) 944, 1141
HinfI GANTC 7 cut(s) 32, 242, 518, 853, 978, 1154, 1274
HpaII CCGG 4 cut(s) 399, 662, 1031, 1201
HphI GGTGA 9 cut(s) 22, 251, 345, 447, 537, 605, 672, 788, 805
Hpy166II GTNNAC 5 cut(s) 22, 526, 944, 1021, 1141
Hpy188I TCNGA 6 cut(s) 331, 606, 770, 883, 1162, 1209
Hpy8I GTNNAC 5 cut(s) 22, 526, 944, 1021, 1141
HpyAV CCTTC 9 cut(s) 282, 348, 549, 590, 908, 1079, 1088, 1204, 1312
HpyCH4III ACNGT 3 cut(s) 121, 648, 941
HpyCH4V TGCA 5 cut(s) 124, 296, 349, 866, 1262
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 89, 699
HpyF3I CTNAG 5 cut(s) 549, 564, 688, 697, 1239
Hsp92II CATG 3 cut(s) 203, 349, 1127
Kzo9I GATC 3 cut(s) 574, 932, 1217
LmnI GCTCC 4 cut(s) 45, 502, 787, 1213
Lsp1109I GCAGC 5 cut(s) 61, 83, 101, 555, 850
LweI GCATC 3 cut(s) 702, 850, 1213
MaeI CTAG 3 cut(s) 246, 384, 1101
MaeIII GTNAC 4 cut(s) 239, 543, 752, 850
MalI GATC 3 cut(s) 576, 934, 1219
MboI GATC 3 cut(s) 574, 932, 1217
MhlI GDGCHC 1 cut(s) 1133
MluCI AATT 5 cut(s) 192, 629, 1244, 1249, 1351
MlyI GAGTC 5 cut(s) 41, 236, 527, 847, 987
MmeI TCCRAC 1 cut(s) 284
MseI TTAA 3 cut(s) 923, 992, 1390
MspA1I CMGCKG 5 cut(s) 74, 92, 359, 568, 1378
MspI CCGG 4 cut(s) 399, 662, 1031, 1201
MspR9I CCNGG 5 cut(s) 399, 400, 654, 662, 761
Mva1269I GAATGC 1 cut(s) 1193
MvaI CCWGG 2 cut(s) 654, 761
MwoI GCNNNNNNNGC 3 cut(s) 80, 89, 699
NciI CCSGG 3 cut(s) 399, 400, 662
NdeII GATC 3 cut(s) 574, 932, 1217
NlaIII CATG 3 cut(s) 203, 349, 1127
NlaIV GGNNCC 2 cut(s) 555, 1282
NmeAIII GCCGAG 2 cut(s) 121, 541
NmuCI GTSAC 4 cut(s) 239, 543, 752, 850
NspI RCATGY 1 cut(s) 203
NspV TTCGAA 1 cut(s) 1328
PagI TCATGA 1 cut(s) 1123
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 1193
PfeI GAWTC 2 cut(s) 1154, 1274
PflMI CCANNNNNTGG 1 cut(s) 147
PfoI TCCNGGA 1 cut(s) 759
PkrI GCNGC 6 cut(s) 73, 76, 91, 94, 570, 865
PleI GAGTC 5 cut(s) 40, 236, 526, 847, 986
PpsI GAGTC 5 cut(s) 40, 236, 526, 847, 986
PpuMI RGGWCCY 1 cut(s) 1097
Psp5II RGGWCCY 1 cut(s) 1097
Psp6I CCWGG 2 cut(s) 652, 759
PspGI CCWGG 2 cut(s) 652, 759
PspN4I GGNNCC 2 cut(s) 555, 1282
PspPI GGNCC 4 cut(s) 138, 401, 425, 1097
PspPPI RGGWCCY 1 cut(s) 1097
PstNI CAGNNNCTG 1 cut(s) 704
PvuII CAGCTG 3 cut(s) 74, 359, 568
RsaI GTAC 5 cut(s) 282, 392, 650, 709, 1072
RsaNI GTAC 5 cut(s) 281, 391, 649, 708, 1071
SaqAI TTAA 3 cut(s) 923, 992, 1390
SatI GCNGC 6 cut(s) 72, 75, 90, 93, 569, 864
Sau3AI GATC 3 cut(s) 574, 932, 1217
Sau96I GGNCC 4 cut(s) 138, 401, 425, 1097
SchI GAGTC 5 cut(s) 41, 236, 527, 847, 987
ScrFI CCNGG 5 cut(s) 399, 400, 654, 662, 761
SduI GDGCHC 1 cut(s) 1133
SfaNI GCATC 3 cut(s) 702, 850, 1213
SfcI CTRYAG 1 cut(s) 1170
SfuI TTCGAA 1 cut(s) 1328
SinI GGWCC 2 cut(s) 425, 1097
SmaI CCCGGG 1 cut(s) 400
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
Sse9I AATT 5 cut(s) 192, 629, 1244, 1249, 1351
SsiI CCGC 4 cut(s) 27, 92, 902, 1378
SspMI CTAG 3 cut(s) 246, 384, 1101
StyD4I CCNGG 5 cut(s) 397, 398, 652, 660, 759
TaaI ACNGT 3 cut(s) 121, 648, 941
TaqI TCGA 3 cut(s) 410, 1254, 1328
TaqII GACCGA 1 cut(s) 959
TasI AATT 5 cut(s) 192, 629, 1244, 1249, 1351
TatI WGTACW 3 cut(s) 280, 390, 1070
TauI GCSGC 1 cut(s) 95
TfiI GAWTC 2 cut(s) 1154, 1274
Tru1I TTAA 3 cut(s) 923, 992, 1390
Tru9I TTAA 3 cut(s) 923, 992, 1390
TscAI CASTG 1 cut(s) 1303
TseFI GTSAC 4 cut(s) 239, 543, 752, 850
TseI GCWGC 5 cut(s) 71, 74, 89, 568, 863
Tsp45I GTSAC 4 cut(s) 239, 543, 752, 850
TspDTI ATGAA 3 cut(s) 642, 1014, 1167
TspGWI ACGGA 1 cut(s) 291
TspMI CCCGGG 1 cut(s) 398
TspRI CASTG 1 cut(s) 1303
Van91I CCANNNNNTGG 1 cut(s) 147
VpaK11BI GGWCC 2 cut(s) 425, 1097
XapI RAATTY 2 cut(s) 629, 1244
XbaI TCTAGA 1 cut(s) 245
XceI RCATGY 1 cut(s) 203
XcmI CCANNNNNNNNNTGG 1 cut(s) 650
XmaI CCCGGG 1 cut(s) 398
XspI CTAG 3 cut(s) 246, 384, 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.