Prupe.5G102900_v2.0.a1

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0015618
Physical Location & Seq
Reverse (-)
10985890 .. 10989205
3316 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G102900.1

Sequence Viewer

Length: 1368 bp
ATGAGACGTGTGAATGGAGAGTCGAGAACTGGGAACAACGCTTTGGAGACTATAAACGCAGCTGCTTCTGCGATCGCAGCCGCCGAGAACCGTGTGCCTCAAGCCACCGTTCAGAAAAGAAGATGGGGGAGCTGGTGGAGCATGTATTGGTGTTTTGGATTTCAAAGACACAAAAAGAGAATTGGACATGCTGTCCTTGTCCCAGAAACAACAGACCGTGGAGGTGATGCTCCTAGAGCTGAAAATCCAATCCAAACACCTTCCATTGTACTTCCCTTTGTTGCACCTCCGTCCTCTCCTGCATCATTTCTTCAATCAGAACCTCCTTCTGCCACACAATCACCAGCTGGTTTTTTCTCTCTCACTGCCAGCATGTACTCCCCTAGTGGCCCTACCTCAATTTTCGCTATTGGTCCTTATGCTCATGAAACCCAGTTGGTCTCACCTCCTGTTTTCTCAACCTTCACTACTGAGCCATCAACTGCTCCCTTTACTCCTCCTCCTGAGTCTGTTCATTTGACTACACCGTCATCACCTGAGGTTCCATTTGCTCAGCTGCTTGATCCTCACTTCCGGAATGGTGAAGGTGGTCAGAGATTCCCATTGTCTCACTATGAATTTCAATCTTACCAACTTTACCCTGGAAGCCCAGTGGGTCAGCTTATATCACCAAGTTCAGGCATCTCAGGTTCTGGTACTTCTTCTCCTTTCCCTGACCTTGAGTTTGCTGCTCGTGGTCATCATTTTCTGGAGTTCCGAACAGGTGATCCTCCCAAGCTCTTGAACCTCGACATTCTCTCCACCCGTGATTGGGGTTCAAGACTAGGATCTGGTTCTGTAACCCCCGATGGTGCAAAGTCCACATCTTCTGATGGTTTTCTTCTAAAGCCTCAAACCCCTGAGGTTGTATTAAATCCACGATCAAACAATAGAGGTCGAAATAATGATATTTCCATCAACCACAGAGTTTCATTTGAGTTAAGTTCTGAAGAAGTTATCAGATGCGTGGAAAAGAAGCCAGTCGCATTAGCTGAAGCTGTATCAACATCTCTAGAAGATACAGAGAAGGCCCAAAGCAAAGAAGATCCTAGTAAAGTAGTAAGCAGTTCTATTTGCCCTGTTGGTGAGACATCCAATGATGCAGCAGAAAAAGCCGTGGCGGATGGGGAGGAGGCACAGCTGCATCCAAAGCAGCGATCCATCACGCTTGGTTCTGTCAAGGAATTTAATTTTGACAATCCAGATGGAGGAGATTCTGGTAACTCTATTGGCTCTGACTGGTGGGCAAATGAGAAGGTTGATGCCAAGGAGAATGGCCCAACAAAGAATTGGTCGTTCTTCCCTATGATGCAGCCGGGTGTTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

456

Amino Acids

49.07

Weight (kDa)

5.56

Isoelectric Point (pI)

53.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015618)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02720
malus_domestica MD06G1086300.v1.1 MD14G1107500.v1.1
prunus_persica Prupe.5G102900_v2.0.a1
pyrus_communis pycom06g08290 pycom14g10250
rosa_chinensis RchiOBHm_Chr7g0197211
rosa_laevigata RLG00000003951
rosa_multiflora Rmu_ssc0000465.1_g000014
rosa_roxburghii Rroxscaffold_3G00258590
rosa_rugosa Rorug07G0038700
rosa_samantha Rh7AG163300 Rh7BG165300 Rh7CG171300 Rh7DG164700
rosa_wichuraiana Rw7G014260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 526
AccIII TCCGGA 1 cut(s) 573
AciI CCGC 2 cut(s) 81, 1160
AclWI GGATC 5 cut(s) 557, 761, 835, 1079, 1191
AcsI RAATTY 2 cut(s) 617, 1223
AcuI CTGAAG 2 cut(s) 1008, 1053
AfaI GTAC 3 cut(s) 270, 377, 697
AfiI CCNNNNNNNGG 4 cut(s) 677, 810, 811, 1247
AflIII ACRYGT 1 cut(s) 7
AgsI TTSAA 5 cut(s) 164, 314, 623, 784, 819
AhdI GACNNNNNGTC 1 cut(s) 191
AjiI CACGTC 1 cut(s) 8
AjnI CCWGG 1 cut(s) 640
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AloI GAACNNNNNNTCC 2 cut(s) 751, 783
Alw26I GTCTC 4 cut(s) 41, 445, 612, 1121
AlwI GGATC 5 cut(s) 557, 761, 835, 1079, 1191
AlwNI CAGNNNCTG 1 cut(s) 692
Aor13HI TCCGGA 1 cut(s) 573
AoxI GGCC 3 cut(s) 388, 1068, 1315
ApeKI GCWGC 9 cut(s) 59, 62, 77, 556, 728, 1142, 1180, 1192, 1351
ApoI RAATTY 2 cut(s) 617, 1223
ArsI GACNNNNNNTTYG 4 cut(s) 707, 739, 1316, 1348
AsiSI GCGATCGC 1 cut(s) 75
AspS9I GGNCC 4 cut(s) 389, 413, 1069, 1316
AsuC2I CCSGG 1 cut(s) 1356
AsuHPI GGTGA 8 cut(s) 236, 333, 435, 525, 593, 660, 776, 1136
AvaII GGWCC 1 cut(s) 413
AxyI CCTNAGG 2 cut(s) 537, 900
BauI CACGAG 1 cut(s) 732
BbvI GCAGC 9 cut(s) 49, 71, 89, 543, 715, 1154, 1167, 1204, 1363
BccI CCATC 8 cut(s) 117, 484, 842, 866, 962, 1157, 1208, 1238
BceAI ACGGC 1 cut(s) 1139
BciT130I CCWGG 1 cut(s) 642
BcnI CCSGG 1 cut(s) 1356
BcoDI GTCTC 4 cut(s) 41, 445, 612, 1121
BfaI CTAG 5 cut(s) 234, 384, 824, 1052, 1089
BlpI GCTNAGC 1 cut(s) 552
Bme1390I CCNGG 2 cut(s) 642, 1356
Bme18I GGWCC 1 cut(s) 413
BmeRI GACNNNNNGTC 1 cut(s) 191
BmgBI CACGTC 1 cut(s) 8
BmgT120I GGNCC 4 cut(s) 389, 413, 1069, 1316
BmiI GGNNCC 1 cut(s) 543
BmrFI CCNGG 2 cut(s) 642, 1356
BmrI ACTGGG 3 cut(s) 39, 427, 644
BmsI GCATC 8 cut(s) 217, 311, 690, 992, 1129, 1192, 1291, 1338
BmuI ACTGGG 3 cut(s) 39, 427, 644
BpmI CTGGAG 1 cut(s) 770
Bpu1102I GCTNAGC 1 cut(s) 552
BpuEI CTTGAG 2 cut(s) 84, 740
BpuMI CCSGG 1 cut(s) 1356
BsaI GGTCTC 1 cut(s) 445
BsaJI CCNNGG 4 cut(s) 217, 640, 1155, 1305
BsaWI WCCGGW 1 cut(s) 573
BsaXI ACNNNNNCTCC 6 cut(s) 484, 514, 688, 718, 782, 812
Bsc4I CCNNNNNNNGG 4 cut(s) 677, 810, 811, 1247
Bse1I ACTGG 5 cut(s) 34, 433, 650, 1019, 1283
Bse21I CCTNAGG 2 cut(s) 537, 900
BseAI TCCGGA 1 cut(s) 573
BseBI CCWGG 1 cut(s) 642
BseDI CCNNGG 4 cut(s) 217, 640, 1155, 1305
BseGI GGATG 3 cut(s) 1130, 1168, 1183
BseLI CCNNNNNNNGG 4 cut(s) 677, 810, 811, 1247
BseMII CTCAG 6 cut(s) 462, 495, 528, 566, 699, 891
BseNI ACTGG 5 cut(s) 34, 433, 650, 1019, 1283
BseRI GAGGAG 4 cut(s) 486, 489, 1184, 1263
BseXI GCAGC 9 cut(s) 49, 71, 89, 543, 715, 1154, 1167, 1204, 1363
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 3 cut(s) 390, 1070, 1317
BsiEI CGRYCG 1 cut(s) 75
BsiSI CCGG 2 cut(s) 574, 1355
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 4 cut(s) 677, 810, 811, 1247
BsmAI GTCTC 4 cut(s) 41, 445, 612, 1121
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 3 cut(s) 390, 1070, 1317
Bso31I GGTCTC 1 cut(s) 445
Bsp13I TCCGGA 1 cut(s) 573
Bsp143I GATC 7 cut(s) 72, 562, 766, 827, 920, 1084, 1196
Bsp1720I GCTNAGC 1 cut(s) 552
BspACI CCGC 2 cut(s) 81, 1160
BspANI GGCC 3 cut(s) 390, 1070, 1317
BspCNI CTCAG 6 cut(s) 463, 496, 529, 565, 698, 892
BspEI TCCGGA 1 cut(s) 573
BspHI TCATGA 1 cut(s) 424
BspLI GGNNCC 1 cut(s) 543
BspPI GGATC 5 cut(s) 557, 761, 835, 1079, 1191
BspTNI GGTCTC 1 cut(s) 445
BsrI ACTGG 5 cut(s) 34, 433, 650, 1019, 1283
BssECI CCNNGG 4 cut(s) 217, 640, 1155, 1305
BssMI GATC 7 cut(s) 72, 562, 766, 827, 920, 1084, 1196
BssSI CACGAG 1 cut(s) 732
BssT1I CCWWGG 1 cut(s) 1305
Bst2BI CACGAG 1 cut(s) 732
Bst2UI CCWGG 1 cut(s) 642
Bst4CI ACNGT 4 cut(s) 92, 109, 218, 528
BstC8I GCNNGC 1 cut(s) 370
BstDEI CTNAG 6 cut(s) 471, 504, 537, 552, 685, 900
BstDSI CCRYGG 2 cut(s) 217, 1155
BstF5I GGATG 3 cut(s) 1130, 1168, 1183
BstKTI GATC 7 cut(s) 75, 565, 769, 830, 923, 1087, 1199
BstMAI GTCTC 4 cut(s) 41, 445, 612, 1121
BstMBI GATC 7 cut(s) 72, 562, 766, 827, 920, 1084, 1196
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 6 cut(s) 68, 77, 138, 236, 1151, 1189
BstNI CCWGG 1 cut(s) 642
BstNSI RCATGY 3 cut(s) 145, 191, 376
BstSCI CCNGG 2 cut(s) 640, 1354
BstV1I GCAGC 9 cut(s) 49, 71, 89, 543, 715, 1154, 1167, 1204, 1363
BstX2I RGATCY 2 cut(s) 827, 1084
BstYI RGATCY 2 cut(s) 827, 1084
Bsu36I CCTNAGG 2 cut(s) 537, 900
BsuRI GGCC 3 cut(s) 390, 1070, 1317
BtgI CCRYGG 2 cut(s) 217, 1155
BtrI CACGTC 1 cut(s) 8
BtsCI GGATG 3 cut(s) 1130, 1168, 1183
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 2 cut(s) 363, 657
Cac8I GCNNGC 1 cut(s) 370
CaiI CAGNNNCTG 1 cut(s) 692
CciI TCATGA 1 cut(s) 424
Cfr13I GGNCC 4 cut(s) 389, 413, 1069, 1316
Csp6I GTAC 3 cut(s) 269, 376, 696
CviAII CATG 4 cut(s) 142, 188, 373, 425
CviQI GTAC 3 cut(s) 269, 376, 696
DdeI CTNAG 6 cut(s) 471, 504, 537, 552, 685, 900
DpnI GATC 7 cut(s) 74, 564, 768, 829, 922, 1086, 1198
DpnII GATC 7 cut(s) 72, 562, 766, 827, 920, 1084, 1196
DrdI GACNNNNNNGTC 1 cut(s) 526
DriI GACNNNNNGTC 1 cut(s) 191
DseDI GACNNNNNNGTC 1 cut(s) 526
Eam1105I GACNNNNNGTC 1 cut(s) 191
EciI GGCGGA 1 cut(s) 1175
Eco130I CCWWGG 1 cut(s) 1305
Eco31I GGTCTC 1 cut(s) 445
Eco47I GGWCC 1 cut(s) 413
Eco57I CTGAAG 2 cut(s) 1008, 1053
Eco81I CCTNAGG 2 cut(s) 537, 900
EcoRII CCWGG 1 cut(s) 640
EcoT14I CCWWGG 1 cut(s) 1305
ErhI CCWWGG 1 cut(s) 1305
FaeI CATG 4 cut(s) 145, 191, 376, 428
FaiI YATR 9 cut(s) 53, 143, 189, 374, 420, 426, 615, 665, 1346
FaqI GGGAC 1 cut(s) 185
FatI CATG 4 cut(s) 141, 187, 372, 424
FokI GGATG 3 cut(s) 1117, 1170, 1175
FspBI CTAG 5 cut(s) 234, 384, 824, 1052, 1089
GsuI CTGGAG 1 cut(s) 770
HaeIII GGCC 3 cut(s) 390, 1070, 1317
HapII CCGG 2 cut(s) 574, 1355
Hin1II CATG 4 cut(s) 145, 191, 376, 428
HinfI GANTC 4 cut(s) 20, 506, 597, 1253
HpaII CCGG 2 cut(s) 574, 1355
HphI GGTGA 8 cut(s) 236, 333, 435, 525, 593, 660, 776, 1136
Hpy166II GTNNAC 1 cut(s) 861
Hpy188I TCNGA 8 cut(s) 114, 319, 594, 758, 871, 988, 1001, 1276
Hpy188III TCNNGA 9 cut(s) 24, 425, 503, 574, 749, 781, 819, 1052, 1241
Hpy8I GTNNAC 1 cut(s) 861
HpyAV CCTTC 6 cut(s) 270, 336, 472, 578, 1060, 1288
HpyCH4III ACNGT 4 cut(s) 92, 109, 218, 528
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 6 cut(s) 284, 302, 854, 1142, 1183, 1351
HpyF10VI GCNNNNNNNGC 6 cut(s) 68, 77, 138, 236, 1151, 1189
HpyF3I CTNAG 6 cut(s) 471, 504, 537, 552, 685, 900
HpySE526I ACGT 1 cut(s) 7
Hsp92II CATG 4 cut(s) 145, 191, 376, 428
Kpn2I TCCGGA 1 cut(s) 573
Kzo9I GATC 7 cut(s) 72, 562, 766, 827, 920, 1084, 1196
LmnI GCTCC 4 cut(s) 129, 138, 235, 490
Lsp1109I GCAGC 9 cut(s) 49, 71, 89, 543, 715, 1154, 1167, 1204, 1363
LweI GCATC 8 cut(s) 217, 311, 690, 992, 1129, 1192, 1291, 1338
MaeI CTAG 5 cut(s) 234, 384, 824, 1052, 1089
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 2 cut(s) 838, 1259
MalI GATC 7 cut(s) 74, 564, 768, 829, 922, 1086, 1198
MboI GATC 7 cut(s) 72, 562, 766, 827, 920, 1084, 1196
MboII GAAGA 9 cut(s) 132, 302, 693, 858, 872, 1001, 1067, 1094, 1330
MflI RGATCY 2 cut(s) 827, 1084
MluCI AATT 6 cut(s) 180, 399, 617, 1223, 1228, 1327
MlyI GAGTC 2 cut(s) 29, 515
MroI TCCGGA 1 cut(s) 573
MseI TTAA 3 cut(s) 911, 980, 1227
MspA1I CMGCKG 4 cut(s) 62, 347, 556, 1180
MspI CCGG 2 cut(s) 574, 1355
MspR9I CCNGG 2 cut(s) 642, 1356
MvaI CCWGG 1 cut(s) 642
MwoI GCNNNNNNNGC 6 cut(s) 68, 77, 138, 236, 1151, 1189
NciI CCSGG 1 cut(s) 1356
NdeII GATC 7 cut(s) 72, 562, 766, 827, 920, 1084, 1196
NlaIII CATG 4 cut(s) 145, 191, 376, 428
NlaIV GGNNCC 1 cut(s) 543
NmeAIII GCCGAG 1 cut(s) 109
NspI RCATGY 3 cut(s) 145, 191, 376
PagI TCATGA 1 cut(s) 424
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PfeI GAWTC 2 cut(s) 597, 1253
Ple19I CGATCG 1 cut(s) 75
PleI GAGTC 2 cut(s) 28, 514
PpsI GAGTC 2 cut(s) 28, 514
Psp6I CCWGG 1 cut(s) 640
PspGI CCWGG 1 cut(s) 640
PspN4I GGNNCC 1 cut(s) 543
PspPI GGNCC 4 cut(s) 389, 413, 1069, 1316
PstNI CAGNNNCTG 1 cut(s) 692
PsuI RGATCY 2 cut(s) 827, 1084
PvuI CGATCG 1 cut(s) 75
PvuII CAGCTG 4 cut(s) 62, 347, 556, 1180
RgaI GCGATCGC 1 cut(s) 75
RsaI GTAC 3 cut(s) 270, 377, 697
RsaNI GTAC 3 cut(s) 269, 376, 696
SaqAI TTAA 3 cut(s) 911, 980, 1227
Sau3AI GATC 7 cut(s) 72, 562, 766, 827, 920, 1084, 1196
Sau96I GGNCC 4 cut(s) 389, 413, 1069, 1316
SchI GAGTC 2 cut(s) 29, 515
ScrFI CCNGG 2 cut(s) 642, 1356
SfaAI GCGATCGC 1 cut(s) 75
SfaNI GCATC 8 cut(s) 217, 311, 690, 992, 1129, 1192, 1291, 1338
SgfI GCGATCGC 1 cut(s) 75
SinI GGWCC 1 cut(s) 413
SmlI CTYRAG 2 cut(s) 99, 719
SmoI CTYRAG 2 cut(s) 99, 719
Sse9I AATT 6 cut(s) 180, 399, 617, 1223, 1228, 1327
SsiI CCGC 2 cut(s) 81, 1160
SspMI CTAG 5 cut(s) 234, 384, 824, 1052, 1089
StyD4I CCNGG 2 cut(s) 640, 1354
StyI CCWWGG 1 cut(s) 1305
TaaI ACNGT 4 cut(s) 92, 109, 218, 528
TaiI ACGT 1 cut(s) 10
TaqI TCGA 3 cut(s) 23, 789, 937
TasI AATT 6 cut(s) 180, 399, 617, 1223, 1228, 1327
TatI WGTACW 2 cut(s) 268, 375
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 2 cut(s) 597, 1253
Tru1I TTAA 3 cut(s) 911, 980, 1227
Tru9I TTAA 3 cut(s) 911, 980, 1227
TscAI CASTG 2 cut(s) 370, 657
TseI GCWGC 9 cut(s) 59, 62, 77, 556, 728, 1142, 1180, 1192, 1351
TspDTI ATGAA 4 cut(s) 441, 503, 630, 960
TspGWI ACGGA 1 cut(s) 279
TspRI CASTG 2 cut(s) 370, 657
VpaK11BI GGWCC 1 cut(s) 413
XapI RAATTY 2 cut(s) 617, 1223
XbaI TCTAGA 1 cut(s) 1051
XceI RCATGY 3 cut(s) 145, 191, 376
XcmI CCANNNNNNNNNTGG 2 cut(s) 638, 1326
XspI CTAG 5 cut(s) 234, 384, 824, 1052, 1089
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.