Rw7G014260

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0015618
Physical Location & Seq
Forward (+)
13740206 .. 13743325
3120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G014260.1

Sequence Viewer

Length: 1389 bp
ATGATGGTGAGAGGAGTGAACGGCGGAGAGTCCAGAAGTGGGAGCAACGCTTTGGATACTATCAACGCAGCTGCTTCGGCGATCGCGGCGGCCGAGAGCCGTGTTCCTCAAGCCACCGTGCAGAAGAGAAGATGGGCGAAAGGCTGGAGTGTCTATTGGTGTTTCGGCTTTCAAAGACATAGGAAGAGAATTGGACATGCTGTCATTCTCCCAGAAACAAGTTCCTCCAGAGGTGATGACTCTAGAGCCGAAAATCCAACCCAAGCACCTTCCATTGTACTTCCCTTTGTTGCACCTCCGTCCTCTCCTGCTTCATTTCTTCAGTCAGAACCTCCTTCTGCCATGCAATCGCCAGCTGGTTTTAAATCTTTTATTTCTGCTAGTATGTACTCCCCCGGGCCTGCATCGATATTTGCCATTGGTCCTTATGCTCACGAAACCCAGTTGGTCTCACCTCCCGTTTTCTCAACCTTTACTACTGAACCATCAACTGCTCCATTCACTCCTCCTGCCGAGTCTGTTCACTTGACAACACCTTCGTCACCTGAGGTTCCATTTGCTCAGCTGCTTGATCCTAACTTTAGGAATGGTGAAGGTGGTCAGAGATACCCATTATCTCACTATGAATTTCAGTCTTACCAACTGTACCCTGGAAGCCCAGTTGGTCAGCTTATATCACCAAGCTCAGGTATCTCTGGCTCTGGTACTTCTTCTCCTTTCCTTGACAGTGAGTTTACTTCTGGTGGTCGTCACTTCCTGGAGTTCCGAACAGGTGAAGCTCCTAAACTCTTGAACCTTGAAATTCTCTTCAACCGTGATTGGGGTTCAAGACTATGTTCTGGTTCTGTGACTCCTGATGCTGCAAAGTCTACATCTTCTGATGGTTTTACTCTAAAACCGCATACCCCTGAAGGTGTATTCAATACAGGATCAAACAGTCGACGCAGAAATGATGATGTTTCCATCGGTCATAGAGTCTCGTTTGAGTTAAGTGATGAAGAAGTTGTAAGATGTGTGGACAAGAAGCCACTAGCATTAGCTGAAGCTGTATCAACATCTCTACAATGTACAGAAAAGGCTGAAGGAGAAGAAGGTCCTAGTCAAGAAGTGAGTAGTAGTCAGGAGTGCCCTGTTGTTGACACATCCAATGAATCATCAGAAAAGGCTGTAGGAGGAGATGGGGAGGAGGCATTCCACCGGTATCAGAAGGAGCGATCCATCACACTTGGTTCTGCTAAGGAATTCAATTTCGACAATGCAGATGGAGGAGATTCTGCCACCTCTAATATCAGCACTGACTGGTGGGCGAATGAGAAGGTTGTTTCCAACGAGAATGGGCAATCAAAGAATTGGTCTTTCTTCCCTATGATACAGCCAGGTGTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

462

Amino Acids

49.62

Weight (kDa)

5.2

Isoelectric Point (pI)

61.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015618)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02720
malus_domestica MD06G1086300.v1.1 MD14G1107500.v1.1
prunus_persica Prupe.5G102900_v2.0.a1
pyrus_communis pycom06g08290 pycom14g10250
rosa_chinensis RchiOBHm_Chr7g0197211
rosa_laevigata RLG00000003951
rosa_multiflora Rmu_ssc0000465.1_g000014
rosa_roxburghii Rroxscaffold_3G00258590
rosa_rugosa Rorug07G0038700
rosa_samantha Rh7AG163300 Rh7BG165300 Rh7CG171300 Rh7DG164700
rosa_wichuraiana Rw7G014260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 869, 940
AccII CGCG 1 cut(s) 86
AciI CCGC 4 cut(s) 24, 86, 89, 899
AclWI GGATC 3 cut(s) 566, 937, 1209
AcoI YGGCCR 1 cut(s) 90
AcsI RAATTY 3 cut(s) 626, 801, 1241
AcuI CTGAAG 4 cut(s) 305, 930, 1062, 1101
AfaI GTAC 5 cut(s) 279, 389, 647, 706, 1069
AfiI CCNNNNNNNGG 3 cut(s) 39, 686, 820
AgeI ACCGGT 1 cut(s) 1197
AgsI TTSAA 7 cut(s) 173, 793, 800, 811, 828, 922, 1246
AhdI GACNNNNNGTC 1 cut(s) 200
AjnI CCWGG 3 cut(s) 649, 756, 1375
AluBI AGCT 8 cut(s) 71, 356, 565, 670, 684, 779, 1040, 1046
AluI AGCT 8 cut(s) 71, 356, 565, 670, 684, 779, 1040, 1046
Alw26I GTCTC 2 cut(s) 454, 982
AlwI GGATC 3 cut(s) 566, 937, 1209
Ama87I CYCGRG 1 cut(s) 395
AoxI GGCC 2 cut(s) 90, 398
ApeKI GCWGC 4 cut(s) 68, 71, 565, 860
ApoI RAATTY 3 cut(s) 626, 801, 1241
ArsI GACNNNNNNTTYG 4 cut(s) 520, 552, 1337, 1369
AsiGI ACCGGT 1 cut(s) 1197
AsiSI GCGATCGC 1 cut(s) 84
AspS9I GGNCC 3 cut(s) 398, 422, 1094
AsuC2I CCSGG 2 cut(s) 396, 397
AsuHPI GGTGA 7 cut(s) 19, 245, 444, 534, 602, 669, 785
AvaI CYCGRG 1 cut(s) 395
AvaII GGWCC 2 cut(s) 422, 1094
AxyI CCTNAGG 1 cut(s) 546
BaeGI GKGCMC 1 cut(s) 1130
BbvI GCAGC 4 cut(s) 58, 80, 552, 847
BccI CCATC 7 cut(s) 126, 493, 875, 971, 1172, 1226, 1256
BceAI ACGGC 2 cut(s) 37, 84
BcgI CGANNNNNNTGC 2 cut(s) 57, 91
BciT130I CCWGG 3 cut(s) 651, 758, 1377
BciVI GTATCC 1 cut(s) 49
BcnI CCSGG 2 cut(s) 396, 397
BcoDI GTCTC 2 cut(s) 454, 982
BfaI CTAG 4 cut(s) 243, 381, 1031, 1098
BfmI CTRYAG 1 cut(s) 1167
BfuI GTATCC 1 cut(s) 49
BisI GCNGC 6 cut(s) 69, 72, 87, 90, 566, 861
BlpI GCTNAGC 1 cut(s) 561
BlsI GCNGC 6 cut(s) 70, 73, 88, 91, 567, 862
Bme1390I CCNGG 5 cut(s) 396, 397, 651, 758, 1377
Bme18I GGWCC 2 cut(s) 422, 1094
BmeRI GACNNNNNGTC 1 cut(s) 200
BmeT110I CYCGRG 1 cut(s) 395
BmgT120I GGNCC 3 cut(s) 398, 422, 1094
BmiI GGNNCC 1 cut(s) 552
BmrFI CCNGG 5 cut(s) 396, 397, 651, 758, 1377
BmrI ACTGGG 2 cut(s) 436, 653
BmsI GCATC 2 cut(s) 413, 847
BmuI ACTGGG 2 cut(s) 436, 653
BpmI CTGGAG 3 cut(s) 166, 211, 779
Bpu10I CCTNAGC 2 cut(s) 685, 1236
Bpu1102I GCTNAGC 1 cut(s) 561
BpuEI CTTGAG 1 cut(s) 93
BpuMI CCSGG 2 cut(s) 396, 397
Bsa29I ATCGAT 1 cut(s) 407
BsaI GGTCTC 1 cut(s) 454
BsaJI CCNNGG 3 cut(s) 394, 395, 649
BsaWI WCCGGW 1 cut(s) 1197
BsaXI ACNNNNNCTCC 2 cut(s) 697, 727
Bsc4I CCNNNNNNNGG 3 cut(s) 39, 686, 820
Bse118I RCCGGY 1 cut(s) 1197
Bse1I ACTGG 3 cut(s) 442, 659, 1304
Bse21I CCTNAGG 1 cut(s) 546
BseBI CCWGG 3 cut(s) 651, 758, 1377
BseCI ATCGAT 1 cut(s) 407
BseDI CCNNGG 3 cut(s) 394, 395, 649
BseGI GGATG 1 cut(s) 1142
BseLI CCNNNNNNNGG 3 cut(s) 39, 686, 820
BseMII CTCAG 3 cut(s) 537, 575, 699
BseNI ACTGG 3 cut(s) 442, 659, 1304
BseRI GAGGAG 5 cut(s) 27, 495, 1188, 1199, 1281
BseSI GKGCMC 1 cut(s) 1130
BseX3I CGGCCG 1 cut(s) 90
BseXI GCAGC 4 cut(s) 58, 80, 552, 847
BsgI GTGCAG 1 cut(s) 140
Bsh1236I CGCG 1 cut(s) 86
Bsh1285I CGRYCG 2 cut(s) 84, 93
BshFI GGCC 2 cut(s) 92, 400
BshTI ACCGGT 1 cut(s) 1197
BshVI ATCGAT 1 cut(s) 407
BsiEI CGRYCG 2 cut(s) 84, 93
BsiHKCI CYCGRG 1 cut(s) 395
BsiSI CCGG 2 cut(s) 396, 1198
BslI CCNNNNNNNGG 3 cut(s) 39, 686, 820
BsmAI GTCTC 2 cut(s) 454, 982
BsmI GAATGC 1 cut(s) 1190
BsnI GGCC 2 cut(s) 92, 400
Bso31I GGTCTC 1 cut(s) 454
BsoBI CYCGRG 1 cut(s) 395
Bsp1286I GDGCHC 1 cut(s) 1130
Bsp1407I TGTACA 1 cut(s) 1067
Bsp143I GATC 4 cut(s) 81, 571, 929, 1214
Bsp1720I GCTNAGC 1 cut(s) 561
BspACI CCGC 4 cut(s) 24, 86, 89, 899
BspANI GGCC 2 cut(s) 92, 400
BspCNI CTCAG 3 cut(s) 538, 574, 698
BspDI ATCGAT 1 cut(s) 407
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 1 cut(s) 552
BspPI GGATC 3 cut(s) 566, 937, 1209
BspTNI GGTCTC 1 cut(s) 454
BsrFI RCCGGY 1 cut(s) 1197
BsrGI TGTACA 1 cut(s) 1067
BsrI ACTGG 3 cut(s) 442, 659, 1304
BssAI RCCGGY 1 cut(s) 1197
BssECI CCNNGG 3 cut(s) 394, 395, 649
BssMI GATC 4 cut(s) 81, 571, 929, 1214
Bst2UI CCWGG 3 cut(s) 651, 758, 1377
Bst4CI ACNGT 5 cut(s) 118, 645, 728, 815, 938
Bst6I CTCTTC 3 cut(s) 119, 179, 812
BstAUI TGTACA 1 cut(s) 1067
BstC8I GCNNGC 2 cut(s) 354, 402
BstDEI CTNAG 4 cut(s) 546, 561, 685, 1236
BstF5I GGATG 1 cut(s) 1142
BstFNI CGCG 1 cut(s) 86
BstKTI GATC 4 cut(s) 84, 574, 932, 1217
BstMAI GTCTC 2 cut(s) 454, 982
BstMBI GATC 4 cut(s) 81, 571, 929, 1214
BstMCI CGRYCG 2 cut(s) 84, 93
BstMWI GCNNNNNNNGC 2 cut(s) 77, 86
BstNI CCWGG 3 cut(s) 651, 758, 1377
BstNSI RCATGY 1 cut(s) 200
BstSCI CCNGG 5 cut(s) 394, 395, 649, 756, 1375
BstSFI CTRYAG 1 cut(s) 1167
BstSLI GKGCMC 1 cut(s) 1130
BstUI CGCG 1 cut(s) 86
BstV1I GCAGC 4 cut(s) 58, 80, 552, 847
BstZI CGGCCG 1 cut(s) 90
Bsu15I ATCGAT 1 cut(s) 407
Bsu36I CCTNAGG 1 cut(s) 546
BsuI GTATCC 1 cut(s) 49
BsuRI GGCC 2 cut(s) 92, 400
BsuTUI ATCGAT 1 cut(s) 407
BtsCI GGATG 1 cut(s) 1142
BtsIMutI CAGTG 2 cut(s) 733, 1293
Cac8I GCNNGC 2 cut(s) 354, 402
Cfr10I RCCGGY 1 cut(s) 1197
Cfr13I GGNCC 3 cut(s) 398, 422, 1094
Cfr9I CCCGGG 1 cut(s) 395
ClaI ATCGAT 1 cut(s) 407
CseI GACGC 1 cut(s) 951
Csp6I GTAC 5 cut(s) 278, 388, 646, 705, 1068
CspAI ACCGGT 1 cut(s) 1197
CviAII CATG 2 cut(s) 197, 343
CviQI GTAC 5 cut(s) 278, 388, 646, 705, 1068
DdeI CTNAG 4 cut(s) 546, 561, 685, 1236
DpnI GATC 4 cut(s) 83, 573, 931, 1216
DpnII GATC 4 cut(s) 81, 571, 929, 1214
DraI TTTAAA 1 cut(s) 364
DriI GACNNNNNGTC 1 cut(s) 200
EaeI YGGCCR 1 cut(s) 90
EagI CGGCCG 1 cut(s) 90
Eam1104I CTCTTC 3 cut(s) 119, 179, 812
Eam1105I GACNNNNNGTC 1 cut(s) 200
EarI CTCTTC 3 cut(s) 119, 179, 812
EciI GGCGGA 1 cut(s) 39
EclXI CGGCCG 1 cut(s) 90
Eco31I GGTCTC 1 cut(s) 454
Eco47I GGWCC 2 cut(s) 422, 1094
Eco52I CGGCCG 1 cut(s) 90
Eco57I CTGAAG 4 cut(s) 305, 930, 1062, 1101
Eco81I CCTNAGG 1 cut(s) 546
Eco88I CYCGRG 1 cut(s) 395
EcoO109I RGGNCCY 1 cut(s) 1094
EcoRI GAATTC 1 cut(s) 1241
EcoRII CCWGG 3 cut(s) 649, 756, 1375
FaeI CATG 2 cut(s) 200, 346
FatI CATG 2 cut(s) 196, 342
FblI GTMKAC 2 cut(s) 869, 940
Fnu4HI GCNGC 6 cut(s) 69, 72, 87, 90, 566, 861
FokI GGATG 1 cut(s) 1129
Fsp4HI GCNGC 6 cut(s) 69, 72, 87, 90, 566, 861
FspBI CTAG 4 cut(s) 243, 381, 1031, 1098
GluI GCNGC 6 cut(s) 69, 72, 87, 90, 566, 861
GsuI CTGGAG 3 cut(s) 166, 211, 779
HaeIII GGCC 2 cut(s) 92, 400
HapII CCGG 2 cut(s) 396, 1198
HgaI GACGC 1 cut(s) 951
Hin1II CATG 2 cut(s) 200, 346
HincII GTYRAC 2 cut(s) 941, 1138
HindII GTYRAC 2 cut(s) 941, 1138
HinfI GANTC 7 cut(s) 29, 239, 515, 850, 975, 1151, 1271
HpaII CCGG 2 cut(s) 396, 1198
HphI GGTGA 7 cut(s) 19, 245, 444, 534, 602, 669, 785
Hpy166II GTNNAC 7 cut(s) 19, 523, 735, 870, 941, 1018, 1138
Hpy188I TCNGA 6 cut(s) 328, 603, 767, 880, 1159, 1206
Hpy188III TCNNGA 9 cut(s) 33, 228, 243, 434, 790, 828, 854, 1103, 1121
Hpy8I GTNNAC 7 cut(s) 19, 523, 735, 870, 941, 1018, 1138
Hpy99I CGWCG 1 cut(s) 945
HpyAV CCTTC 9 cut(s) 279, 345, 546, 587, 905, 1076, 1085, 1201, 1309
HpyCH4III ACNGT 5 cut(s) 118, 645, 728, 815, 938
HpyCH4V TGCA 6 cut(s) 121, 293, 346, 404, 863, 1259
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 86
HpyF3I CTNAG 4 cut(s) 546, 561, 685, 1236
Hsp92II CATG 2 cut(s) 200, 346
Kzo9I GATC 4 cut(s) 81, 571, 929, 1214
LmnI GCTCC 4 cut(s) 42, 499, 784, 1210
Lsp1109I GCAGC 4 cut(s) 58, 80, 552, 847
LweI GCATC 2 cut(s) 413, 847
MaeI CTAG 4 cut(s) 243, 381, 1031, 1098
MaeIII GTNAC 3 cut(s) 540, 749, 847
MalI GATC 4 cut(s) 83, 573, 931, 1216
MboI GATC 4 cut(s) 81, 571, 929, 1214
MhlI GDGCHC 1 cut(s) 1130
MluCI AATT 6 cut(s) 189, 626, 801, 1241, 1246, 1348
MlyI GAGTC 5 cut(s) 38, 233, 524, 844, 984
MmeI TCCRAC 2 cut(s) 281, 1350
MseI TTAA 3 cut(s) 363, 989, 1387
MspA1I CMGCKG 3 cut(s) 71, 356, 565
MspI CCGG 2 cut(s) 396, 1198
MspR9I CCNGG 5 cut(s) 396, 397, 651, 758, 1377
Mva1269I GAATGC 1 cut(s) 1190
MvaI CCWGG 3 cut(s) 651, 758, 1377
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 2 cut(s) 77, 86
NciI CCSGG 2 cut(s) 396, 397
NdeII GATC 4 cut(s) 81, 571, 929, 1214
NlaIII CATG 2 cut(s) 200, 346
NlaIV GGNNCC 1 cut(s) 552
NmeAIII GCCGAG 2 cut(s) 118, 538
NmuCI GTSAC 3 cut(s) 540, 749, 847
NspI RCATGY 1 cut(s) 200
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PctI GAATGC 1 cut(s) 1190
PfeI GAWTC 2 cut(s) 1151, 1271
PfoI TCCNGGA 1 cut(s) 756
PinAI ACCGGT 1 cut(s) 1197
PkrI GCNGC 6 cut(s) 70, 73, 88, 91, 567, 862
Ple19I CGATCG 1 cut(s) 84
PleI GAGTC 5 cut(s) 37, 233, 523, 844, 983
PpsI GAGTC 5 cut(s) 37, 233, 523, 844, 983
PpuMI RGGWCCY 1 cut(s) 1094
Psp5II RGGWCCY 1 cut(s) 1094
Psp6I CCWGG 3 cut(s) 649, 756, 1375
PspGI CCWGG 3 cut(s) 649, 756, 1375
PspN4I GGNNCC 1 cut(s) 552
PspPI GGNCC 3 cut(s) 398, 422, 1094
PspPPI RGGWCCY 1 cut(s) 1094
PvuI CGATCG 1 cut(s) 84
PvuII CAGCTG 3 cut(s) 71, 356, 565
RgaI GCGATCGC 1 cut(s) 84
RsaI GTAC 5 cut(s) 279, 389, 647, 706, 1069
RsaNI GTAC 5 cut(s) 278, 388, 646, 705, 1068
SalI GTCGAC 1 cut(s) 939
SaqAI TTAA 3 cut(s) 363, 989, 1387
SatI GCNGC 6 cut(s) 69, 72, 87, 90, 566, 861
Sau3AI GATC 4 cut(s) 81, 571, 929, 1214
Sau96I GGNCC 3 cut(s) 398, 422, 1094
SchI GAGTC 5 cut(s) 38, 233, 524, 844, 984
ScrFI CCNGG 5 cut(s) 396, 397, 651, 758, 1377
SduI GDGCHC 1 cut(s) 1130
SfaAI GCGATCGC 1 cut(s) 84
SfaNI GCATC 2 cut(s) 413, 847
SfcI CTRYAG 1 cut(s) 1167
SgfI GCGATCGC 1 cut(s) 84
SinI GGWCC 2 cut(s) 422, 1094
SmaI CCCGGG 1 cut(s) 397
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
Sse9I AATT 6 cut(s) 189, 626, 801, 1241, 1246, 1348
SsiI CCGC 4 cut(s) 24, 86, 89, 899
SspMI CTAG 4 cut(s) 243, 381, 1031, 1098
StyD4I CCNGG 5 cut(s) 394, 395, 649, 756, 1375
TaaI ACNGT 5 cut(s) 118, 645, 728, 815, 938
TaqI TCGA 3 cut(s) 407, 940, 1251
TaqII GACCGA 1 cut(s) 956
TasI AATT 6 cut(s) 189, 626, 801, 1241, 1246, 1348
TatI WGTACW 3 cut(s) 277, 387, 1067
TauI GCSGC 2 cut(s) 89, 92
TfiI GAWTC 2 cut(s) 1151, 1271
Tru1I TTAA 3 cut(s) 363, 989, 1387
Tru9I TTAA 3 cut(s) 363, 989, 1387
TscAI CASTG 2 cut(s) 733, 1300
TseFI GTSAC 3 cut(s) 540, 749, 847
TseI GCWGC 4 cut(s) 68, 71, 565, 860
Tsp45I GTSAC 3 cut(s) 540, 749, 847
TspDTI ATGAA 4 cut(s) 303, 639, 1011, 1164
TspGWI ACGGA 1 cut(s) 288
TspMI CCCGGG 1 cut(s) 395
TspRI CASTG 2 cut(s) 733, 1300
VpaK11BI GGWCC 2 cut(s) 422, 1094
XapI RAATTY 3 cut(s) 626, 801, 1241
XbaI TCTAGA 1 cut(s) 242
XceI RCATGY 1 cut(s) 200
XcmI CCANNNNNNNNNTGG 1 cut(s) 647
XmaI CCCGGG 1 cut(s) 395
XmiI GTMKAC 2 cut(s) 869, 940
XspI CTAG 4 cut(s) 243, 381, 1031, 1098
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.