Rh7BG165300

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015618
Physical Location & Seq
Forward (+)
12826079 .. 12831335
5257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG165300.1

Sequence Viewer

Length: 1395 bp
ATGATGATGATGGTGAGAGGAGTGAACGGCGGAGAGTCTAGAAGTGGGAGCAACGCTTTGGATACTATCAACGCAGCTGCTTCGGCGATCGCGGCGGCCGAGAGCCGTGTTCCTCAAGCCACCGTGCAGAAGAGAAGATGGGCCAAAGGCTGGAGTGTCTATTCGTGTTTCGGCTTTCAAAGACATAGGAAGAGAATTGGACATGCTGTCATTCTCCCAGAAACAAGTTCCTCCGGAGGTGATGACTCTAGAGCCGAAAATCCAACCCAAACACCTTCCATTGTACTTCCCTTTGTTGCACCTCCGTCCTCTCCTGCTTCGTTTCTTCAGTCAGAACCTCCTTCTGCCATGCAATCACCAGCTGGTTTTAAATCTTCTATTTCTGCTAGTATGTACTCCCCCGGGCCTGCATCGATATTTGCCATTGGTCCTTATGCTCACGAAACCCAGTTGGTCTCACCTCCCGTTTTCTCAACCTTTACTACTGAACCATCAACTGCTCCATTCACTCCTCCTGCCGAGTCTGTTCACTTGACTACACCTTCATCACCTGAGGTTCCATTTGCTCAGCTGCTTGATCCTAACTTTAGGAATGGTGAAGGTGGTCAGAGATACCCATTATCTCACTATGAATTTCAGTCTTACCAACTGTACCCTGGAAGCCCAGTTGGTCAGCTTATATCACCAAGCTCAGGTATCTCCGGCTCTGGTACTTCTTCTCCTTTCCTTGACAGTGAGTTTGCTTCTGGTGGTCGTCACTTCCTGGAGTTCCGAACAGGTGAAGCTCCTAAACTCTTGAACCTTGATATTCTCTTCACCCGTGATTGGGGTTCAAGACTATGTTCTGGTTCTGTGACTCCTGATGCTGCAAAGTCTACATCTTCCGATGGTTTTACTCTAAAACCGCATACCCCTGAAGGTGTATTCAATGCAGGATCAAACAGTCGACGCAGAAATGATGATGTTTCCATCGGTCATAGAGTCTCGTTTGAGTTAAGTGATGAAGAAGTTGTAAGATGTGTGGACAAGAAGCCAGTAGCATTAGCTGAAGCTGTATCAACATCTCTACAAAGTACAGAAAAGGCTGAAGGAGAAGAAGGTCCTAGTCAAGAAGTGAGTGGTAGTCATGAGTGCCCTGTTGTTGACACATCCAATGAATCATCAGAAAAGGCTGTAGGAGGAGATGGGGAGGAGGCATTCCACCGGCATCAGAAGGAGCGATCCATCACACTTGGTTCTGCTAAGGAATTCAATTTCGACAATGCAGATGGAGGAGATTCTGGCACCTCTAATATCAGCACTGACTGGTGGGCGAATGAGAAGGTTGTTTCGAACGAGAATGGGCAATCAAAGAATTGGTCTTTCTTCCCTATGATACAGCCGGGTGTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

464

Amino Acids

49.48

Weight (kDa)

5.24

Isoelectric Point (pI)

61.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015618)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02720
malus_domestica MD06G1086300.v1.1 MD14G1107500.v1.1
prunus_persica Prupe.5G102900_v2.0.a1
pyrus_communis pycom06g08290 pycom14g10250
rosa_chinensis RchiOBHm_Chr7g0197211
rosa_laevigata RLG00000003951
rosa_multiflora Rmu_ssc0000465.1_g000014
rosa_roxburghii Rroxscaffold_3G00258590
rosa_rugosa Rorug07G0038700
rosa_samantha Rh7AG163300 Rh7BG165300 Rh7CG171300 Rh7DG164700
rosa_wichuraiana Rw7G014260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1283
AccB7I CCANNNNNTGG 1 cut(s) 150
AccI GTMKAC 2 cut(s) 875, 946
AccII CGCG 1 cut(s) 92
AccIII TCCGGA 1 cut(s) 233
AciI CCGC 4 cut(s) 30, 92, 95, 905
AclWI GGATC 3 cut(s) 572, 943, 1215
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 2 cut(s) 632, 1247
AcuI CTGAAG 4 cut(s) 311, 936, 1068, 1107
AfaI GTAC 5 cut(s) 285, 395, 653, 712, 1075
AfiI CCNNNNNNNGG 4 cut(s) 150, 692, 825, 826
AgsI TTSAA 5 cut(s) 179, 799, 834, 928, 1252
AhdI GACNNNNNGTC 1 cut(s) 206
AjnI CCWGG 2 cut(s) 655, 762
AluBI AGCT 8 cut(s) 77, 362, 571, 676, 690, 785, 1046, 1052
AluI AGCT 8 cut(s) 77, 362, 571, 676, 690, 785, 1046, 1052
Alw26I GTCTC 2 cut(s) 460, 988
AlwI GGATC 3 cut(s) 572, 943, 1215
Ama87I CYCGRG 1 cut(s) 401
Aor13HI TCCGGA 1 cut(s) 233
AoxI GGCC 3 cut(s) 96, 141, 404
ApeKI GCWGC 4 cut(s) 74, 77, 571, 866
ApoI RAATTY 2 cut(s) 632, 1247
ArsI GACNNNNNNTTYG 4 cut(s) 722, 754, 1343, 1375
AsiSI GCGATCGC 1 cut(s) 90
AspS9I GGNCC 4 cut(s) 141, 404, 428, 1100
AsuC2I CCSGG 3 cut(s) 402, 403, 1383
AsuHPI GGTGA 9 cut(s) 25, 251, 348, 450, 540, 608, 675, 791, 808
AsuII TTCGAA 1 cut(s) 1331
AvaI CYCGRG 1 cut(s) 401
AvaII GGWCC 2 cut(s) 428, 1100
AxyI CCTNAGG 1 cut(s) 552
BaeGI GKGCMC 1 cut(s) 1136
BanI GGYRCC 1 cut(s) 1283
BbvI GCAGC 4 cut(s) 64, 86, 558, 853
BccI CCATC 8 cut(s) 4, 132, 499, 881, 977, 1178, 1232, 1262
BceAI ACGGC 2 cut(s) 43, 90
BcgI CGANNNNNNTGC 2 cut(s) 63, 97
BciT130I CCWGG 2 cut(s) 657, 764
BciVI GTATCC 1 cut(s) 55
BcnI CCSGG 3 cut(s) 402, 403, 1383
BcoDI GTCTC 2 cut(s) 460, 988
BfaI CTAG 4 cut(s) 39, 249, 387, 1104
BfmI CTRYAG 1 cut(s) 1173
BfuI GTATCC 1 cut(s) 55
BisI GCNGC 6 cut(s) 75, 78, 93, 96, 572, 867
BlpI GCTNAGC 1 cut(s) 567
BlsI GCNGC 6 cut(s) 76, 79, 94, 97, 573, 868
Bme1390I CCNGG 5 cut(s) 402, 403, 657, 764, 1383
Bme18I GGWCC 2 cut(s) 428, 1100
BmeRI GACNNNNNGTC 1 cut(s) 206
BmeT110I CYCGRG 1 cut(s) 401
BmgT120I GGNCC 4 cut(s) 141, 404, 428, 1100
BmiI GGNNCC 2 cut(s) 558, 1285
BmrFI CCNGG 5 cut(s) 402, 403, 657, 764, 1383
BmrI ACTGGG 2 cut(s) 442, 659
BmsI GCATC 3 cut(s) 419, 853, 1216
BmuI ACTGGG 2 cut(s) 442, 659
BpmI CTGGAG 2 cut(s) 172, 785
Bpu10I CCTNAGC 2 cut(s) 691, 1242
Bpu1102I GCTNAGC 1 cut(s) 567
Bpu14I TTCGAA 1 cut(s) 1331
BpuEI CTTGAG 1 cut(s) 99
BpuMI CCSGG 3 cut(s) 402, 403, 1383
Bsa29I ATCGAT 1 cut(s) 413
BsaI GGTCTC 1 cut(s) 460
BsaJI CCNNGG 3 cut(s) 400, 401, 655
BsaWI WCCGGW 1 cut(s) 233
BsaXI ACNNNNNCTCC 2 cut(s) 703, 733
Bsc4I CCNNNNNNNGG 4 cut(s) 150, 692, 825, 826
Bse118I RCCGGY 1 cut(s) 1203
Bse1I ACTGG 4 cut(s) 448, 665, 1034, 1310
Bse21I CCTNAGG 1 cut(s) 552
BseAI TCCGGA 1 cut(s) 233
BseBI CCWGG 2 cut(s) 657, 764
BseCI ATCGAT 1 cut(s) 413
BseDI CCNNGG 3 cut(s) 400, 401, 655
BseGI GGATG 1 cut(s) 1148
BseLI CCNNNNNNNGG 4 cut(s) 150, 692, 825, 826
BseMII CTCAG 3 cut(s) 543, 581, 705
BseNI ACTGG 4 cut(s) 448, 665, 1034, 1310
BseRI GAGGAG 5 cut(s) 33, 501, 1194, 1205, 1287
BseSI GKGCMC 1 cut(s) 1136
BseX3I CGGCCG 1 cut(s) 96
BseXI GCAGC 4 cut(s) 64, 86, 558, 853
BsgI GTGCAG 1 cut(s) 146
Bsh1236I CGCG 1 cut(s) 92
Bsh1285I CGRYCG 2 cut(s) 90, 99
BshFI GGCC 3 cut(s) 98, 143, 406
BshNI GGYRCC 1 cut(s) 1283
BshVI ATCGAT 1 cut(s) 413
BsiEI CGRYCG 2 cut(s) 90, 99
BsiHKCI CYCGRG 1 cut(s) 401
BsiSI CCGG 5 cut(s) 234, 402, 702, 1204, 1382
BslI CCNNNNNNNGG 4 cut(s) 150, 692, 825, 826
BsmAI GTCTC 2 cut(s) 460, 988
BsmI GAATGC 1 cut(s) 1196
BsnI GGCC 3 cut(s) 98, 143, 406
Bso31I GGTCTC 1 cut(s) 460
BsoBI CYCGRG 1 cut(s) 401
Bsp119I TTCGAA 1 cut(s) 1331
Bsp1286I GDGCHC 1 cut(s) 1136
Bsp13I TCCGGA 1 cut(s) 233
Bsp143I GATC 4 cut(s) 87, 577, 935, 1220
Bsp1720I GCTNAGC 1 cut(s) 567
BspACI CCGC 4 cut(s) 30, 92, 95, 905
BspANI GGCC 3 cut(s) 98, 143, 406
BspCNI CTCAG 3 cut(s) 544, 580, 704
BspDI ATCGAT 1 cut(s) 413
BspEI TCCGGA 1 cut(s) 233
BspFNI CGCG 1 cut(s) 92
BspHI TCATGA 1 cut(s) 1126
BspLI GGNNCC 2 cut(s) 558, 1285
BspPI GGATC 3 cut(s) 572, 943, 1215
BspT104I TTCGAA 1 cut(s) 1331
BspT107I GGYRCC 1 cut(s) 1283
BspTNI GGTCTC 1 cut(s) 460
BsrFI RCCGGY 1 cut(s) 1203
BsrI ACTGG 4 cut(s) 448, 665, 1034, 1310
BssAI RCCGGY 1 cut(s) 1203
BssECI CCNNGG 3 cut(s) 400, 401, 655
BssMI GATC 4 cut(s) 87, 577, 935, 1220
Bst2UI CCWGG 2 cut(s) 657, 764
Bst4CI ACNGT 4 cut(s) 124, 651, 734, 944
Bst6I CTCTTC 3 cut(s) 125, 185, 818
BstBI TTCGAA 1 cut(s) 1331
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 4 cut(s) 552, 567, 691, 1242
BstF5I GGATG 1 cut(s) 1148
BstFNI CGCG 1 cut(s) 92
BstKTI GATC 4 cut(s) 90, 580, 938, 1223
BstMAI GTCTC 2 cut(s) 460, 988
BstMBI GATC 4 cut(s) 87, 577, 935, 1220
BstMCI CGRYCG 2 cut(s) 90, 99
BstMWI GCNNNNNNNGC 2 cut(s) 83, 92
BstNI CCWGG 2 cut(s) 657, 764
BstNSI RCATGY 1 cut(s) 206
BstSCI CCNGG 5 cut(s) 400, 401, 655, 762, 1381
BstSFI CTRYAG 1 cut(s) 1173
BstSLI GKGCMC 1 cut(s) 1136
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 4 cut(s) 64, 86, 558, 853
BstZI CGGCCG 1 cut(s) 96
Bsu15I ATCGAT 1 cut(s) 413
Bsu36I CCTNAGG 1 cut(s) 552
BsuI GTATCC 1 cut(s) 55
BsuRI GGCC 3 cut(s) 98, 143, 406
BsuTUI ATCGAT 1 cut(s) 413
BtsCI GGATG 1 cut(s) 1148
BtsIMutI CAGTG 2 cut(s) 739, 1299
Cac8I GCNNGC 1 cut(s) 408
CciI TCATGA 1 cut(s) 1126
Cfr10I RCCGGY 1 cut(s) 1203
Cfr13I GGNCC 4 cut(s) 141, 404, 428, 1100
Cfr9I CCCGGG 1 cut(s) 401
ClaI ATCGAT 1 cut(s) 413
CseI GACGC 1 cut(s) 957
Csp6I GTAC 5 cut(s) 284, 394, 652, 711, 1074
CviAII CATG 3 cut(s) 203, 349, 1127
CviQI GTAC 5 cut(s) 284, 394, 652, 711, 1074
DdeI CTNAG 4 cut(s) 552, 567, 691, 1242
DpnI GATC 4 cut(s) 89, 579, 937, 1222
DpnII GATC 4 cut(s) 87, 577, 935, 1220
DraI TTTAAA 1 cut(s) 370
DriI GACNNNNNGTC 1 cut(s) 206
EaeI YGGCCR 1 cut(s) 96
EagI CGGCCG 1 cut(s) 96
Eam1104I CTCTTC 3 cut(s) 125, 185, 818
Eam1105I GACNNNNNGTC 1 cut(s) 206
EarI CTCTTC 3 cut(s) 125, 185, 818
EciI GGCGGA 1 cut(s) 45
EclXI CGGCCG 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 460
Eco47I GGWCC 2 cut(s) 428, 1100
Eco52I CGGCCG 1 cut(s) 96
Eco57I CTGAAG 4 cut(s) 311, 936, 1068, 1107
Eco81I CCTNAGG 1 cut(s) 552
Eco88I CYCGRG 1 cut(s) 401
EcoO109I RGGNCCY 1 cut(s) 1100
EcoRI GAATTC 1 cut(s) 1247
EcoRII CCWGG 2 cut(s) 655, 762
FaeI CATG 3 cut(s) 206, 352, 1130
FatI CATG 3 cut(s) 202, 348, 1126
FblI GTMKAC 2 cut(s) 875, 946
Fnu4HI GCNGC 6 cut(s) 75, 78, 93, 96, 572, 867
FokI GGATG 1 cut(s) 1135
Fsp4HI GCNGC 6 cut(s) 75, 78, 93, 96, 572, 867
FspBI CTAG 4 cut(s) 39, 249, 387, 1104
GluI GCNGC 6 cut(s) 75, 78, 93, 96, 572, 867
GsuI CTGGAG 2 cut(s) 172, 785
HaeIII GGCC 3 cut(s) 98, 143, 406
HapII CCGG 5 cut(s) 234, 402, 702, 1204, 1382
HgaI GACGC 1 cut(s) 957
Hin1II CATG 3 cut(s) 206, 352, 1130
HincII GTYRAC 2 cut(s) 947, 1144
HindII GTYRAC 2 cut(s) 947, 1144
HinfI GANTC 7 cut(s) 35, 245, 521, 856, 981, 1157, 1277
HpaII CCGG 5 cut(s) 234, 402, 702, 1204, 1382
HphI GGTGA 9 cut(s) 25, 251, 348, 450, 540, 608, 675, 791, 808
Hpy166II GTNNAC 6 cut(s) 25, 529, 876, 947, 1024, 1144
Hpy188I TCNGA 6 cut(s) 334, 609, 773, 886, 1165, 1212
Hpy188III TCNNGA 9 cut(s) 39, 234, 249, 440, 796, 834, 860, 1109, 1127
Hpy8I GTNNAC 6 cut(s) 25, 529, 876, 947, 1024, 1144
Hpy99I CGWCG 1 cut(s) 951
HpyAV CCTTC 9 cut(s) 285, 351, 552, 593, 911, 1082, 1091, 1207, 1315
HpyCH4III ACNGT 4 cut(s) 124, 651, 734, 944
HpyCH4V TGCA 7 cut(s) 127, 299, 352, 410, 869, 932, 1265
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 92
HpyF3I CTNAG 4 cut(s) 552, 567, 691, 1242
Hsp92II CATG 3 cut(s) 206, 352, 1130
Kpn2I TCCGGA 1 cut(s) 233
Kzo9I GATC 4 cut(s) 87, 577, 935, 1220
LmnI GCTCC 4 cut(s) 48, 505, 790, 1216
Lsp1109I GCAGC 4 cut(s) 64, 86, 558, 853
LweI GCATC 3 cut(s) 419, 853, 1216
MaeI CTAG 4 cut(s) 39, 249, 387, 1104
MaeIII GTNAC 2 cut(s) 755, 853
MalI GATC 4 cut(s) 89, 579, 937, 1222
MboI GATC 4 cut(s) 87, 577, 935, 1220
MhlI GDGCHC 1 cut(s) 1136
MluCI AATT 5 cut(s) 195, 632, 1247, 1252, 1354
MlyI GAGTC 5 cut(s) 44, 239, 530, 850, 990
MmeI TCCRAC 1 cut(s) 287
MroI TCCGGA 1 cut(s) 233
MseI TTAA 3 cut(s) 369, 995, 1393
MspA1I CMGCKG 3 cut(s) 77, 362, 571
MspI CCGG 5 cut(s) 234, 402, 702, 1204, 1382
MspR9I CCNGG 5 cut(s) 402, 403, 657, 764, 1383
Mva1269I GAATGC 1 cut(s) 1196
MvaI CCWGG 2 cut(s) 657, 764
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 83, 92
NciI CCSGG 3 cut(s) 402, 403, 1383
NdeII GATC 4 cut(s) 87, 577, 935, 1220
NlaIII CATG 3 cut(s) 206, 352, 1130
NlaIV GGNNCC 2 cut(s) 558, 1285
NmeAIII GCCGAG 2 cut(s) 124, 544
NmuCI GTSAC 2 cut(s) 755, 853
NspI RCATGY 1 cut(s) 206
NspV TTCGAA 1 cut(s) 1331
PagI TCATGA 1 cut(s) 1126
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 1 cut(s) 1196
PfeI GAWTC 2 cut(s) 1157, 1277
PflMI CCANNNNNTGG 1 cut(s) 150
PfoI TCCNGGA 1 cut(s) 762
PkrI GCNGC 6 cut(s) 76, 79, 94, 97, 573, 868
Ple19I CGATCG 1 cut(s) 90
PleI GAGTC 5 cut(s) 43, 239, 529, 850, 989
PpsI GAGTC 5 cut(s) 43, 239, 529, 850, 989
PpuMI RGGWCCY 1 cut(s) 1100
Psp5II RGGWCCY 1 cut(s) 1100
Psp6I CCWGG 2 cut(s) 655, 762
PspGI CCWGG 2 cut(s) 655, 762
PspN4I GGNNCC 2 cut(s) 558, 1285
PspPI GGNCC 4 cut(s) 141, 404, 428, 1100
PspPPI RGGWCCY 1 cut(s) 1100
PvuI CGATCG 1 cut(s) 90
PvuII CAGCTG 3 cut(s) 77, 362, 571
RgaI GCGATCGC 1 cut(s) 90
RsaI GTAC 5 cut(s) 285, 395, 653, 712, 1075
RsaNI GTAC 5 cut(s) 284, 394, 652, 711, 1074
SalI GTCGAC 1 cut(s) 945
SaqAI TTAA 3 cut(s) 369, 995, 1393
SatI GCNGC 6 cut(s) 75, 78, 93, 96, 572, 867
Sau3AI GATC 4 cut(s) 87, 577, 935, 1220
Sau96I GGNCC 4 cut(s) 141, 404, 428, 1100
SchI GAGTC 5 cut(s) 44, 239, 530, 850, 990
ScrFI CCNGG 5 cut(s) 402, 403, 657, 764, 1383
SduI GDGCHC 1 cut(s) 1136
SfaAI GCGATCGC 1 cut(s) 90
SfaNI GCATC 3 cut(s) 419, 853, 1216
SfcI CTRYAG 1 cut(s) 1173
SfuI TTCGAA 1 cut(s) 1331
SgfI GCGATCGC 1 cut(s) 90
SinI GGWCC 2 cut(s) 428, 1100
SmaI CCCGGG 1 cut(s) 403
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
Sse9I AATT 5 cut(s) 195, 632, 1247, 1252, 1354
SsiI CCGC 4 cut(s) 30, 92, 95, 905
SspMI CTAG 4 cut(s) 39, 249, 387, 1104
StyD4I CCNGG 5 cut(s) 400, 401, 655, 762, 1381
TaaI ACNGT 4 cut(s) 124, 651, 734, 944
TaqI TCGA 4 cut(s) 413, 946, 1257, 1331
TaqII GACCGA 1 cut(s) 962
TasI AATT 5 cut(s) 195, 632, 1247, 1252, 1354
TatI WGTACW 3 cut(s) 283, 393, 1073
TauI GCSGC 2 cut(s) 95, 98
TfiI GAWTC 2 cut(s) 1157, 1277
Tru1I TTAA 3 cut(s) 369, 995, 1393
Tru9I TTAA 3 cut(s) 369, 995, 1393
TscAI CASTG 2 cut(s) 739, 1306
TseFI GTSAC 2 cut(s) 755, 853
TseI GCWGC 4 cut(s) 74, 77, 571, 866
Tsp45I GTSAC 2 cut(s) 755, 853
TspDTI ATGAA 4 cut(s) 534, 645, 1017, 1170
TspGWI ACGGA 1 cut(s) 294
TspMI CCCGGG 1 cut(s) 401
TspRI CASTG 2 cut(s) 739, 1306
Van91I CCANNNNNTGG 1 cut(s) 150
VpaK11BI GGWCC 2 cut(s) 428, 1100
XapI RAATTY 2 cut(s) 632, 1247
XbaI TCTAGA 2 cut(s) 38, 248
XceI RCATGY 1 cut(s) 206
XcmI CCANNNNNNNNNTGG 1 cut(s) 653
XmaI CCCGGG 1 cut(s) 401
XmiI GTMKAC 2 cut(s) 875, 946
XspI CTAG 4 cut(s) 39, 249, 387, 1104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.