FvH4_5g04430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0017661
Physical Location & Seq
Forward (+)
2597548 .. 2598369
822 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g04430.t1

Sequence Viewer

Length: 822 bp
ATGGCCAAGCTCATCTCCACCGCCGCCGCCCTCTTCCTCCTCTTCGCCTTCTCCCACGCCCGCACGCCGTCCGATCTCCCCAACGGCCTCGATGTAATCGCAGATAACAAGATCCCCGTAACCGACGCCGCAGATAAGATCCCCGTAACCGACGCCGATGTTAAAGCCACCACCACAACAGACAACACTCTCCGTTTACCGAGCGAGAGACCCGGATCCGAAACCGTTGTGGAATCGGAGCCCGCGACCTTCGCGGAGGATCAGAAGCTTCCGGAAGGCGCCGAGTTCGTAACGATCGTATCGAACGAGGAGAACACGGCCGACGCTTCCAAATCCGAGACGACCCTCCCGTTGACCGTCATCAGCTTTCGCCCCGTCGGCCGCCACTTCCCCCGCCGTCCCTTCCCGTTGGGCTTCCGTCACGGCCACCGCTGCCGCCATGGCCACCGCCAGGCCAAGTGGACCCCGCGCGTAAAGGATCTCCATAACAAGGACGCTACTCCCTACGGCGACGACATGATCCTGGCCTCCGGCGAGCCGGAGATGAAGTTCGACCGTCCCTTCCGCGGCGAAGCGCGTCCTCAGATCCCGGCCAGGTGGACCGATTTCCGCCACGTCGGACCTAGATTCCCGCACAAACACGGCGATGAGATGGACTCCGAGAGGCCTCACCTCCACCACCGCCGCCACCGCCACCACGATCACGACGATGAGATGGAAAATGAGGGAGAGGAGCACCACAGGGAGCATAGACATGAGCACAGGCATGAGCAGCACCATGGTTTGTTCAGAAGCTTCCGCAAGTTCTTGAACGGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

274

Amino Acids

31.37

Weight (kDa)

6.58

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017661)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g04430
prunus_persica Prupe.5G117500_v2.0.a1
pyrus_communis pycom06g09950
rosa_laevigata RLG00000004147 RLG00000008498
rosa_multiflora Rmu_sc0000884.1_g000001 Rmu_sc0004584.1_g000008
rosa_roxburghii Rroxscaffold_3G00260800
rosa_rugosa Rorug07G0020600
rosa_samantha Rh7BG148600 Rh7CG152200
rosa_wichuraiana Rw7G012630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 278
AccII CGCG 6 cut(s) 245, 254, 469, 471, 567, 577
AccIII TCCGGA 1 cut(s) 271
AclWI GGATC 8 cut(s) 106, 133, 210, 223, 267, 486, 514, 580
AcoI YGGCCR 6 cut(s) 3, 318, 379, 424, 442, 591
AcyI GRCGYC 3 cut(s) 126, 153, 279
AfiI CCNNNNNNNGG 3 cut(s) 451, 490, 566
AgsI TTSAA 1 cut(s) 811
AjiI CACGTC 1 cut(s) 616
AjnI CCWGG 3 cut(s) 450, 522, 593
AloI GAACNNNNNNTCC 2 cut(s) 533, 565
AluBI AGCT 4 cut(s) 10, 268, 366, 795
AluI AGCT 4 cut(s) 10, 268, 366, 795
Alw21I GWGCWC 2 cut(s) 738, 762
Alw26I GTCTC 2 cut(s) 202, 332
AlwI GGATC 8 cut(s) 106, 133, 210, 223, 267, 486, 514, 580
Aor13HI TCCGGA 1 cut(s) 271
ApeKI GCWGC 2 cut(s) 432, 772
AspLEI GCGC 3 cut(s) 281, 471, 577
AspS9I GGNCC 3 cut(s) 462, 600, 620
AsuC2I CCSGG 2 cut(s) 213, 590
AsuHPI GGTGA 1 cut(s) 662
AvaII GGWCC 3 cut(s) 462, 600, 620
BaeI ACNNNNGTAYC 2 cut(s) 282, 315
BalI TGGCCA 2 cut(s) 5, 444
BamHI GGATCC 1 cut(s) 215
BanI GGYRCC 1 cut(s) 278
BanII GRGCYC 1 cut(s) 243
Bbv12I GWGCWC 2 cut(s) 738, 762
BbvI GCAGC 2 cut(s) 419, 784
BccI CCATC 2 cut(s) 646, 709
BceAI ACGGC 7 cut(s) 52, 100, 333, 381, 439, 523, 658
BciT130I CCWGG 3 cut(s) 452, 524, 595
BcnI CCSGG 2 cut(s) 213, 590
BcoDI GTCTC 2 cut(s) 202, 332
BfaI CTAG 1 cut(s) 624
BfoI RGCGCY 1 cut(s) 282
BglI GCCNNNNNGGC 2 cut(s) 378, 441
BisI GCNGC 9 cut(s) 24, 27, 129, 382, 433, 436, 568, 685, 773
BlsI GCNGC 9 cut(s) 25, 28, 130, 383, 434, 437, 569, 686, 774
Bme1390I CCNGG 5 cut(s) 213, 452, 524, 590, 595
Bme18I GGWCC 3 cut(s) 462, 600, 620
BmgBI CACGTC 1 cut(s) 616
BmgT120I GGNCC 3 cut(s) 462, 600, 620
BmiI GGNNCC 4 cut(s) 217, 240, 280, 464
BmrFI CCNGG 5 cut(s) 213, 452, 524, 590, 595
BplI GAGNNNNNCTC 2 cut(s) 641, 673
BpuMI CCSGG 2 cut(s) 213, 590
BsaHI GRCGYC 3 cut(s) 126, 153, 279
BsaI GGTCTC 1 cut(s) 202
BsaJI CCNNGG 3 cut(s) 439, 565, 778
BsaWI WCCGGW 1 cut(s) 271
BsaXI ACNNNNNCTCC 2 cut(s) 533, 563
Bsc4I CCNNNNNNNGG 3 cut(s) 451, 490, 566
BseAI TCCGGA 1 cut(s) 271
BseBI CCWGG 3 cut(s) 452, 524, 595
BseDI CCNNGG 3 cut(s) 439, 565, 778
BseLI CCNNNNNNNGG 3 cut(s) 451, 490, 566
BseMII CTCAG 1 cut(s) 596
BseRI GAGGAG 3 cut(s) 29, 323, 746
BseX3I CGGCCG 2 cut(s) 318, 379
BseXI GCAGC 2 cut(s) 419, 784
Bsh1236I CGCG 6 cut(s) 245, 254, 469, 471, 567, 577
Bsh1285I CGRYCG 4 cut(s) 297, 321, 382, 556
BshNI GGYRCC 1 cut(s) 278
BsiEI CGRYCG 4 cut(s) 297, 321, 382, 556
BsiHKAI GWGCWC 2 cut(s) 738, 762
BsiSI CCGG 5 cut(s) 213, 272, 531, 539, 590
BslFI GGGAC 2 cut(s) 384, 543
BslI CCNNNNNNNGG 3 cut(s) 451, 490, 566
BsmAI GTCTC 2 cut(s) 202, 332
BsmBI CGTCTC 1 cut(s) 332
BsmFI GGGAC 2 cut(s) 384, 543
Bso31I GGTCTC 1 cut(s) 202
Bsp1286I GDGCHC 3 cut(s) 243, 738, 762
Bsp13I TCCGGA 1 cut(s) 271
Bsp19I CCATGG 2 cut(s) 439, 778
BspCNI CTCAG 1 cut(s) 595
BspEI TCCGGA 1 cut(s) 271
BspFNI CGCG 6 cut(s) 245, 254, 469, 471, 567, 577
BspLI GGNNCC 4 cut(s) 217, 240, 280, 464
BspPI GGATC 8 cut(s) 106, 133, 210, 223, 267, 486, 514, 580
BspT107I GGYRCC 1 cut(s) 278
BspTNI GGTCTC 1 cut(s) 202
BssECI CCNNGG 3 cut(s) 439, 565, 778
BssNI GRCGYC 3 cut(s) 126, 153, 279
BssT1I CCWWGG 2 cut(s) 439, 778
Bst2UI CCWGG 3 cut(s) 452, 524, 595
Bst4CI ACNGT 3 cut(s) 226, 358, 557
Bst6I CTCTTC 2 cut(s) 38, 47
BstACI GRCGYC 3 cut(s) 126, 153, 279
BstC8I GCNNGC 4 cut(s) 61, 65, 243, 536
BstDEI CTNAG 1 cut(s) 582
BstDSI CCRYGG 3 cut(s) 439, 565, 778
BstFNI CGCG 6 cut(s) 245, 254, 469, 471, 567, 577
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 3 cut(s) 281, 471, 577
BstMAI GTCTC 2 cut(s) 202, 332
BstMCI CGRYCG 4 cut(s) 297, 321, 382, 556
BstMWI GCNNNNNNNGC 6 cut(s) 251, 378, 432, 441, 690, 772
BstNI CCWGG 3 cut(s) 452, 524, 595
BstSCI CCNGG 5 cut(s) 211, 450, 522, 588, 593
BstUI CGCG 6 cut(s) 245, 254, 469, 471, 567, 577
BstV1I GCAGC 2 cut(s) 419, 784
BstX2I RGATCY 5 cut(s) 111, 138, 215, 478, 585
BstYI RGATCY 5 cut(s) 111, 138, 215, 478, 585
BstZI CGGCCG 2 cut(s) 318, 379
BtgI CCRYGG 3 cut(s) 439, 565, 778
BtgZI GCGATG 1 cut(s) 660
BtrI CACGTC 1 cut(s) 616
Cac8I GCNNGC 4 cut(s) 61, 65, 243, 536
CfoI GCGC 3 cut(s) 281, 471, 577
Cfr13I GGNCC 3 cut(s) 462, 600, 620
Cfr42I CCGCGG 1 cut(s) 568
CseI GACGC 5 cut(s) 134, 161, 332, 503, 566
CviAII CATG 5 cut(s) 440, 517, 755, 767, 779
DdeI CTNAG 1 cut(s) 582
DinI GGCGCC 1 cut(s) 280
EaeI YGGCCR 6 cut(s) 3, 318, 379, 424, 442, 591
EagI CGGCCG 2 cut(s) 318, 379
Eam1104I CTCTTC 2 cut(s) 38, 47
EarI CTCTTC 2 cut(s) 38, 47
EciI GGCGGA 1 cut(s) 599
EclXI CGGCCG 2 cut(s) 318, 379
Eco130I CCWWGG 2 cut(s) 439, 778
Eco147I AGGCCT 1 cut(s) 667
Eco24I GRGCYC 1 cut(s) 243
Eco31I GGTCTC 1 cut(s) 202
Eco47I GGWCC 3 cut(s) 462, 600, 620
Eco52I CGGCCG 2 cut(s) 318, 379
EcoRII CCWGG 3 cut(s) 450, 522, 593
EcoT14I CCWWGG 2 cut(s) 439, 778
EcoT38I GRGCYC 1 cut(s) 243
EgeI GGCGCC 1 cut(s) 280
EheI GGCGCC 1 cut(s) 280
ErhI CCWWGG 2 cut(s) 439, 778
Esp3I CGTCTC 1 cut(s) 332
FaeI CATG 5 cut(s) 443, 520, 758, 770, 782
FaiI YATR 7 cut(s) 441, 486, 518, 750, 756, 768, 780
FaqI GGGAC 2 cut(s) 384, 543
FatI CATG 5 cut(s) 439, 516, 754, 766, 778
FauI CCCGC 5 cut(s) 68, 250, 401, 474, 639
Fnu4HI GCNGC 9 cut(s) 24, 27, 129, 382, 433, 436, 568, 685, 773
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 9 cut(s) 24, 27, 129, 382, 433, 436, 568, 685, 773
FspBI CTAG 1 cut(s) 624
GlaI GCGC 3 cut(s) 280, 470, 576
GluI GCNGC 9 cut(s) 24, 27, 129, 382, 433, 436, 568, 685, 773
HaeII RGCGCY 1 cut(s) 282
HapII CCGG 5 cut(s) 213, 272, 531, 539, 590
HgaI GACGC 5 cut(s) 134, 161, 332, 503, 566
HhaI GCGC 3 cut(s) 281, 471, 577
Hin1I GRCGYC 3 cut(s) 126, 153, 279
Hin1II CATG 5 cut(s) 443, 520, 758, 770, 782
Hin6I GCGC 3 cut(s) 279, 469, 575
HinP1I GCGC 3 cut(s) 279, 469, 575
HincII GTYRAC 1 cut(s) 354
HindII GTYRAC 1 cut(s) 354
HindIII AAGCTT 2 cut(s) 266, 793
HinfI GANTC 3 cut(s) 233, 627, 656
HpaII CCGG 5 cut(s) 213, 272, 531, 539, 590
HphI GGTGA 1 cut(s) 662
Hpy166II GTNNAC 4 cut(s) 197, 354, 462, 600
Hpy188I TCNGA 9 cut(s) 73, 220, 238, 264, 337, 585, 620, 661, 791
Hpy188III TCNNGA 3 cut(s) 272, 704, 808
Hpy8I GTNNAC 4 cut(s) 197, 354, 462, 600
Hpy99I CGWCG 7 cut(s) 128, 155, 326, 380, 515, 620, 710
HpyAV CCTTC 5 cut(s) 58, 259, 269, 412, 571
HpyCH4III ACNGT 3 cut(s) 226, 358, 557
HpyCH4IV ACGT 1 cut(s) 615
HpyF10VI GCNNNNNNNGC 6 cut(s) 251, 378, 432, 441, 690, 772
HpyF3I CTNAG 1 cut(s) 582
HpySE526I ACGT 1 cut(s) 615
Hsp92I GRCGYC 3 cut(s) 126, 153, 279
Hsp92II CATG 5 cut(s) 443, 520, 758, 770, 782
HspAI GCGC 3 cut(s) 279, 469, 575
KasI GGCGCC 1 cut(s) 278
Kpn2I TCCGGA 1 cut(s) 271
KspI CCGCGG 1 cut(s) 568
LmnI GCTCC 3 cut(s) 238, 733, 745
Lsp1109I GCAGC 2 cut(s) 419, 784
MaeI CTAG 1 cut(s) 624
MaeII ACGT 1 cut(s) 615
MaeIII GTNAC 4 cut(s) 118, 145, 289, 419
MboII GAAGA 2 cut(s) 25, 34
MflI RGATCY 5 cut(s) 111, 138, 215, 478, 585
MhlI GDGCHC 3 cut(s) 243, 738, 762
MlsI TGGCCA 2 cut(s) 5, 444
MluNI TGGCCA 2 cut(s) 5, 444
Mly113I GGCGCC 1 cut(s) 279
MlyI GAGTC 1 cut(s) 650
MmeI TCCRAC 1 cut(s) 598
Mox20I TGGCCA 2 cut(s) 5, 444
MroI TCCGGA 1 cut(s) 271
MscI TGGCCA 2 cut(s) 5, 444
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 4 cut(s) 645, 708, 753, 765
Msp20I TGGCCA 2 cut(s) 5, 444
MspA1I CMGCKG 2 cut(s) 432, 567
MspI CCGG 5 cut(s) 213, 272, 531, 539, 590
MspR9I CCNGG 5 cut(s) 213, 452, 524, 590, 595
MvaI CCWGG 3 cut(s) 452, 524, 595
MvnI CGCG 6 cut(s) 245, 254, 469, 471, 567, 577
MwoI GCNNNNNNNGC 6 cut(s) 251, 378, 432, 441, 690, 772
NarI GGCGCC 1 cut(s) 279
NciI CCSGG 2 cut(s) 213, 590
NcoI CCATGG 2 cut(s) 439, 778
NlaIII CATG 5 cut(s) 443, 520, 758, 770, 782
NlaIV GGNNCC 4 cut(s) 217, 240, 280, 464
NmeAIII GCCGAG 1 cut(s) 307
NmuCI GTSAC 1 cut(s) 419
PceI AGGCCT 1 cut(s) 667
PcsI WCGNNNNNNNCGW 6 cut(s) 242, 294, 299, 303, 347, 705
PfeI GAWTC 2 cut(s) 233, 627
PkrI GCNGC 9 cut(s) 25, 28, 130, 383, 434, 437, 569, 686, 774
Ple19I CGATCG 1 cut(s) 297
PleI GAGTC 1 cut(s) 650
PluTI GGCGCC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 650
Psp6I CCWGG 3 cut(s) 450, 522, 593
PspGI CCWGG 3 cut(s) 450, 522, 593
PspN4I GGNNCC 4 cut(s) 217, 240, 280, 464
PspPI GGNCC 3 cut(s) 462, 600, 620
PsuI RGATCY 5 cut(s) 111, 138, 215, 478, 585
PvuI CGATCG 1 cut(s) 297
RseI CAYNNNNRTG 4 cut(s) 645, 708, 753, 765
SacII CCGCGG 1 cut(s) 568
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 9 cut(s) 24, 27, 129, 382, 433, 436, 568, 685, 773
Sau96I GGNCC 3 cut(s) 462, 600, 620
SchI GAGTC 1 cut(s) 650
ScrFI CCNGG 5 cut(s) 213, 452, 524, 590, 595
SduI GDGCHC 3 cut(s) 243, 738, 762
SetI ASST 9 cut(s) 12, 251, 270, 368, 599, 618, 625, 675, 797
SfoI GGCGCC 1 cut(s) 280
Sfr303I CCGCGG 1 cut(s) 568
SgrBI CCGCGG 1 cut(s) 568
SinI GGWCC 3 cut(s) 462, 600, 620
SmiMI CAYNNNNRTG 4 cut(s) 645, 708, 753, 765
SseBI AGGCCT 1 cut(s) 667
SspDI GGCGCC 1 cut(s) 278
SspMI CTAG 1 cut(s) 624
StuI AGGCCT 1 cut(s) 667
StyD4I CCNGG 5 cut(s) 211, 450, 522, 588, 593
StyI CCWWGG 2 cut(s) 439, 778
TaaI ACNGT 3 cut(s) 226, 358, 557
TaiI ACGT 1 cut(s) 618
TaqI TCGA 3 cut(s) 90, 302, 552
TaqII GACCGA 1 cut(s) 617
TauI GCSGC 7 cut(s) 26, 29, 131, 384, 438, 570, 687
TfiI GAWTC 2 cut(s) 233, 627
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TseFI GTSAC 1 cut(s) 419
TseI GCWGC 2 cut(s) 432, 772
Tsp45I GTSAC 1 cut(s) 419
TspDTI ATGAA 1 cut(s) 560
TspGWI ACGGA 2 cut(s) 182, 407
VpaK11BI GGWCC 3 cut(s) 462, 600, 620
XspI CTAG 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.