Rmu_sc0000884.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000884.1
OG0017661
Physical Location & Seq
Reverse (-)
11 .. 673
663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000884.1_g000001.1.cds

Sequence Viewer

Length: 663 bp
gctaccaccaacactctacgtttaccgagcgagagacccgggtccgaatccggacccgttgtggaattggaggagaccgaggccttccccgtcgccgaggaggagaagaagcttccggaagccgagttcaccaccatcgaatcgaacgaggagaacaccgccgatgcgtcgaaatccgaggccgttccgttgaccgtcatcagcttccgccccgtcggccgccacttcccccgccgtcctttcccgttgtctatccgtccgggtcaccgctgcggccacggtcgccgccagcccaagcggtggaccccgcgcttccacggcagcgagcgcgagaaggacatgccctacggcgacgacatgatcttgtcctccggcgacgagatgaagttcgatcgtccgttccgcggcggagcgcgccagatcccggccaggtggttcaacttccgccacggcggacctagattcccttacaaacacgacgatgacatggaatccgagaggcctcaccgccaccatcgccgccaccaccaccacgatcacgacttggaccaagaaaatgaggtagagaagaaccacagggagcataaacatgaacacgagcacgagcacgagcacaggggtggtttgttcaggggcttccgcaagttcttgaaccgcttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

220

Amino Acids

26.01

Weight (kDa)

6.94

Isoelectric Point (pI)

62.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017661)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g04430
prunus_persica Prupe.5G117500_v2.0.a1
pyrus_communis pycom06g09950
rosa_laevigata RLG00000004147 RLG00000008498
rosa_multiflora Rmu_sc0000884.1_g000001 Rmu_sc0004584.1_g000008
rosa_roxburghii Rroxscaffold_3G00260800
rosa_rugosa Rorug07G0020600
rosa_samantha Rh7BG148600 Rh7CG152200
rosa_wichuraiana Rw7G012630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 300
AccII CGCG 4 cut(s) 310, 330, 405, 415
AccIII TCCGGA 2 cut(s) 50, 115
AclWI GGATC 1 cut(s) 415
AcoI YGGCCR 3 cut(s) 217, 274, 426
AfiI CCNNNNNNNGG 3 cut(s) 300, 404, 424
AgsI TTSAA 2 cut(s) 439, 652
AjnI CCWGG 1 cut(s) 428
AleI CACNNNNGTG 1 cut(s) 618
AloI GAACNNNNNNTCC 2 cut(s) 110, 142
AluBI AGCT 2 cut(s) 112, 204
AluI AGCT 2 cut(s) 112, 204
Alw21I GWGCWC 3 cut(s) 603, 609, 615
Alw26I GTCTC 2 cut(s) 28, 68
AlwI GGATC 1 cut(s) 415
Ama87I CYCGRG 1 cut(s) 38
Aor13HI TCCGGA 2 cut(s) 50, 115
AoxI GGCC 6 cut(s) 81, 180, 217, 274, 426, 500
ApeKI GCWGC 2 cut(s) 270, 321
AspLEI GCGC 4 cut(s) 312, 330, 415, 417
AspS9I GGNCC 5 cut(s) 42, 53, 303, 455, 547
AsuC2I CCSGG 4 cut(s) 39, 40, 261, 425
AsuHPI GGTGA 3 cut(s) 121, 257, 497
AvaI CYCGRG 1 cut(s) 38
AvaII GGWCC 5 cut(s) 42, 53, 303, 455, 547
BauI CACGAG 3 cut(s) 596, 602, 608
Bbv12I GWGCWC 3 cut(s) 603, 609, 615
BbvI GCAGC 2 cut(s) 257, 333
BccI CCATC 2 cut(s) 143, 522
BceAI ACGGC 5 cut(s) 167, 219, 334, 364, 466
BciT130I CCWGG 1 cut(s) 430
BcnI CCSGG 4 cut(s) 39, 40, 261, 425
BcoDI GTCTC 2 cut(s) 28, 68
BfaI CTAG 1 cut(s) 459
BglI GCCNNNNNGGC 1 cut(s) 216
BisI GCNGC 7 cut(s) 220, 271, 274, 286, 322, 406, 520
BlsI GCNGC 7 cut(s) 221, 272, 275, 287, 323, 407, 521
Bme1390I CCNGG 5 cut(s) 39, 40, 261, 425, 430
Bme18I GGWCC 5 cut(s) 42, 53, 303, 455, 547
BmeT110I CYCGRG 1 cut(s) 38
BmgT120I GGNCC 5 cut(s) 42, 53, 303, 455, 547
BmiI GGNNCC 3 cut(s) 43, 55, 305
BmrFI CCNGG 5 cut(s) 39, 40, 261, 425, 430
BmsI GCATC 1 cut(s) 154
BoxI GACNNNNGTC 1 cut(s) 40
BpuMI CCSGG 4 cut(s) 39, 40, 261, 425
BsaI GGTCTC 2 cut(s) 28, 68
BsaJI CCNNGG 8 cut(s) 38, 78, 96, 177, 277, 316, 403, 448
BsaWI WCCGGW 2 cut(s) 50, 115
Bsc4I CCNNNNNNNGG 3 cut(s) 300, 404, 424
BseAI TCCGGA 2 cut(s) 50, 115
BseBI CCWGG 1 cut(s) 430
BseDI CCNNGG 8 cut(s) 38, 78, 96, 177, 277, 316, 403, 448
BseLI CCNNNNNNNGG 3 cut(s) 300, 404, 424
BsePI GCGCGC 1 cut(s) 413
BseRI GAGGAG 4 cut(s) 86, 113, 116, 164
BseX3I CGGCCG 1 cut(s) 217
BseXI GCAGC 2 cut(s) 257, 333
Bsh1236I CGCG 4 cut(s) 310, 330, 405, 415
Bsh1285I CGRYCG 3 cut(s) 220, 283, 394
BshFI GGCC 6 cut(s) 83, 182, 219, 276, 428, 502
BsiEI CGRYCG 3 cut(s) 220, 283, 394
BsiHKAI GWGCWC 3 cut(s) 603, 609, 615
BsiHKCI CYCGRG 1 cut(s) 38
BsiSI CCGG 6 cut(s) 39, 51, 116, 260, 372, 425
BslI CCNNNNNNNGG 3 cut(s) 300, 404, 424
BsmAI GTCTC 2 cut(s) 28, 68
BsnI GGCC 6 cut(s) 83, 182, 219, 276, 428, 502
Bso31I GGTCTC 2 cut(s) 28, 68
BsoBI CYCGRG 1 cut(s) 38
Bsp1286I GDGCHC 3 cut(s) 603, 609, 615
Bsp13I TCCGGA 2 cut(s) 50, 115
Bsp143I GATC 4 cut(s) 360, 391, 420, 535
BspANI GGCC 6 cut(s) 83, 182, 219, 276, 428, 502
BspEI TCCGGA 2 cut(s) 50, 115
BspFNI CGCG 4 cut(s) 310, 330, 405, 415
BspLI GGNNCC 3 cut(s) 43, 55, 305
BspPI GGATC 1 cut(s) 415
BspTNI GGTCTC 2 cut(s) 28, 68
BssECI CCNNGG 8 cut(s) 38, 78, 96, 177, 277, 316, 403, 448
BssHII GCGCGC 1 cut(s) 413
BssMI GATC 4 cut(s) 360, 391, 420, 535
BssSI CACGAG 3 cut(s) 596, 602, 608
Bst2BI CACGAG 3 cut(s) 596, 602, 608
Bst2UI CCWGG 1 cut(s) 430
Bst4CI ACNGT 2 cut(s) 196, 281
BstC8I GCNNGC 3 cut(s) 290, 326, 415
BstDSI CCRYGG 4 cut(s) 277, 316, 403, 448
BstEII GGTNACC 1 cut(s) 263
BstFNI CGCG 4 cut(s) 310, 330, 405, 415
BstHHI GCGC 4 cut(s) 312, 330, 415, 417
BstKTI GATC 4 cut(s) 363, 394, 423, 538
BstMAI GTCTC 2 cut(s) 28, 68
BstMBI GATC 4 cut(s) 360, 391, 420, 535
BstMCI CGRYCG 3 cut(s) 220, 283, 394
BstMWI GCNNNNNNNGC 6 cut(s) 216, 282, 318, 327, 414, 516
BstNI CCWGG 1 cut(s) 430
BstNSI RCATGY 1 cut(s) 343
BstPAI GACNNNNGTC 1 cut(s) 40
BstPI GGTNACC 1 cut(s) 263
BstSCI CCNGG 5 cut(s) 37, 38, 259, 423, 428
BstUI CGCG 4 cut(s) 310, 330, 405, 415
BstV1I GCAGC 2 cut(s) 257, 333
BstX2I RGATCY 1 cut(s) 420
BstYI RGATCY 1 cut(s) 420
BstZI CGGCCG 1 cut(s) 217
BsuRI GGCC 6 cut(s) 83, 182, 219, 276, 428, 502
BtgI CCRYGG 4 cut(s) 277, 316, 403, 448
BtgZI GCGATG 1 cut(s) 500
Cac8I GCNNGC 3 cut(s) 290, 326, 415
CfoI GCGC 4 cut(s) 312, 330, 415, 417
Cfr13I GGNCC 5 cut(s) 42, 53, 303, 455, 547
Cfr42I CCGCGG 1 cut(s) 406
Cfr9I CCCGGG 1 cut(s) 38
CseI GACGC 1 cut(s) 156
CviAII CATG 4 cut(s) 340, 358, 487, 590
DpnI GATC 4 cut(s) 362, 393, 422, 537
DpnII GATC 4 cut(s) 360, 391, 420, 535
EaeI YGGCCR 3 cut(s) 217, 274, 426
EagI CGGCCG 1 cut(s) 217
EciI GGCGGA 4 cut(s) 197, 423, 434, 468
EclXI CGGCCG 1 cut(s) 217
Eco147I AGGCCT 2 cut(s) 83, 502
Eco31I GGTCTC 2 cut(s) 28, 68
Eco47I GGWCC 5 cut(s) 42, 53, 303, 455, 547
Eco52I CGGCCG 1 cut(s) 217
Eco88I CYCGRG 1 cut(s) 38
Eco91I GGTNACC 1 cut(s) 263
EcoO65I GGTNACC 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 428
FaeI CATG 4 cut(s) 343, 361, 490, 593
FaiI YATR 5 cut(s) 341, 359, 488, 585, 591
FatI CATG 4 cut(s) 339, 357, 486, 589
FauI CCCGC 2 cut(s) 239, 315
Fnu4HI GCNGC 7 cut(s) 220, 271, 274, 286, 322, 406, 520
Fsp4HI GCNGC 7 cut(s) 220, 271, 274, 286, 322, 406, 520
FspBI CTAG 1 cut(s) 459
GlaI GCGC 4 cut(s) 311, 329, 414, 416
GluI GCNGC 7 cut(s) 220, 271, 274, 286, 322, 406, 520
HaeIII GGCC 6 cut(s) 83, 182, 219, 276, 428, 502
HapII CCGG 6 cut(s) 39, 51, 116, 260, 372, 425
HgaI GACGC 1 cut(s) 156
HhaI GCGC 4 cut(s) 312, 330, 415, 417
Hin1II CATG 4 cut(s) 343, 361, 490, 593
Hin6I GCGC 4 cut(s) 310, 328, 413, 415
HinP1I GCGC 4 cut(s) 310, 328, 413, 415
HincII GTYRAC 1 cut(s) 192
HindII GTYRAC 1 cut(s) 192
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 4 cut(s) 47, 140, 462, 491
HpaII CCGG 6 cut(s) 39, 51, 116, 260, 372, 425
HphI GGTGA 3 cut(s) 121, 257, 497
Hpy166II GTNNAC 4 cut(s) 23, 129, 192, 303
Hpy188I TCNGA 3 cut(s) 46, 178, 496
Hpy188III TCNNGA 4 cut(s) 51, 116, 539, 649
Hpy8I GTNNAC 4 cut(s) 23, 129, 192, 303
Hpy99I CGWCG 6 cut(s) 95, 172, 218, 356, 380, 482
HpyAV CCTTC 2 cut(s) 94, 328
HpyCH4III ACNGT 2 cut(s) 196, 281
HpyCH4IV ACGT 1 cut(s) 19
HpyF10VI GCNNNNNNNGC 6 cut(s) 216, 282, 318, 327, 414, 516
HpySE526I ACGT 1 cut(s) 19
Hsp92II CATG 4 cut(s) 343, 361, 490, 593
HspAI GCGC 4 cut(s) 310, 328, 413, 415
Kpn2I TCCGGA 2 cut(s) 50, 115
KspI CCGCGG 1 cut(s) 406
Kzo9I GATC 4 cut(s) 360, 391, 420, 535
LmnI GCTCC 2 cut(s) 410, 580
Lsp1109I GCAGC 2 cut(s) 257, 333
LweI GCATC 1 cut(s) 154
MaeI CTAG 1 cut(s) 459
MaeII ACGT 1 cut(s) 19
MaeIII GTNAC 1 cut(s) 263
MalI GATC 4 cut(s) 362, 393, 422, 537
MboI GATC 4 cut(s) 360, 391, 420, 535
MboII GAAGA 2 cut(s) 118, 580
MflI RGATCY 1 cut(s) 420
MhlI GDGCHC 3 cut(s) 603, 609, 615
MluCI AATT 1 cut(s) 65
MroI TCCGGA 2 cut(s) 50, 115
MslI CAYNNNNRTG 3 cut(s) 480, 588, 618
MspA1I CMGCKG 2 cut(s) 270, 405
MspI CCGG 6 cut(s) 39, 51, 116, 260, 372, 425
MspR9I CCNGG 5 cut(s) 39, 40, 261, 425, 430
MvaI CCWGG 1 cut(s) 430
MvnI CGCG 4 cut(s) 310, 330, 405, 415
MwoI GCNNNNNNNGC 6 cut(s) 216, 282, 318, 327, 414, 516
NciI CCSGG 4 cut(s) 39, 40, 261, 425
NdeII GATC 4 cut(s) 360, 391, 420, 535
NlaIII CATG 4 cut(s) 343, 361, 490, 593
NlaIV GGNNCC 3 cut(s) 43, 55, 305
NmeAIII GCCGAG 2 cut(s) 121, 148
NmuCI GTSAC 1 cut(s) 263
NspI RCATGY 1 cut(s) 343
OliI CACNNNNGTG 1 cut(s) 618
PauI GCGCGC 1 cut(s) 413
PceI AGGCCT 2 cut(s) 83, 502
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PfeI GAWTC 4 cut(s) 47, 140, 462, 491
PflMI CCANNNNNTGG 1 cut(s) 300
PkrI GCNGC 7 cut(s) 221, 272, 275, 287, 323, 407, 521
Ple19I CGATCG 1 cut(s) 394
PshAI GACNNNNGTC 1 cut(s) 40
Psp6I CCWGG 1 cut(s) 428
PspEI GGTNACC 1 cut(s) 263
PspGI CCWGG 1 cut(s) 428
PspN4I GGNNCC 3 cut(s) 43, 55, 305
PspPI GGNCC 5 cut(s) 42, 53, 303, 455, 547
PsuI RGATCY 1 cut(s) 420
PteI GCGCGC 1 cut(s) 413
PvuI CGATCG 1 cut(s) 394
RseI CAYNNNNRTG 3 cut(s) 480, 588, 618
SacII CCGCGG 1 cut(s) 406
SatI GCNGC 7 cut(s) 220, 271, 274, 286, 322, 406, 520
Sau3AI GATC 4 cut(s) 360, 391, 420, 535
Sau96I GGNCC 5 cut(s) 42, 53, 303, 455, 547
ScrFI CCNGG 5 cut(s) 39, 40, 261, 425, 430
SduI GDGCHC 3 cut(s) 603, 609, 615
SetI ASST 6 cut(s) 22, 114, 206, 434, 460, 564
SfaNI GCATC 1 cut(s) 154
Sfr303I CCGCGG 1 cut(s) 406
SgrBI CCGCGG 1 cut(s) 406
SinI GGWCC 5 cut(s) 42, 53, 303, 455, 547
SmaI CCCGGG 1 cut(s) 40
SmiMI CAYNNNNRTG 3 cut(s) 480, 588, 618
Sse9I AATT 1 cut(s) 65
SseBI AGGCCT 2 cut(s) 83, 502
SspMI CTAG 1 cut(s) 459
StuI AGGCCT 2 cut(s) 83, 502
StyD4I CCNGG 5 cut(s) 37, 38, 259, 423, 428
TaaI ACNGT 2 cut(s) 196, 281
TaiI ACGT 1 cut(s) 22
TaqI TCGA 4 cut(s) 138, 143, 170, 390
TaqII GACCGA 1 cut(s) 92
TasI AATT 1 cut(s) 65
TauI GCSGC 5 cut(s) 222, 276, 288, 408, 522
TfiI GAWTC 4 cut(s) 47, 140, 462, 491
TseFI GTSAC 1 cut(s) 263
TseI GCWGC 2 cut(s) 270, 321
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 2 cut(s) 398, 606
TspGWI ACGGA 3 cut(s) 177, 245, 387
TspMI CCCGGG 1 cut(s) 38
Van91I CCANNNNNTGG 1 cut(s) 300
VpaK11BI GGWCC 5 cut(s) 42, 53, 303, 455, 547
XceI RCATGY 1 cut(s) 343
XmaI CCCGGG 1 cut(s) 38
XspI CTAG 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.