Prupe.5G117500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0017661
Physical Location & Seq
Forward (+)
11898592 .. 11899546
955 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G117500.1

Sequence Viewer

Length: 774 bp
ATGGCCAAACTCGTCTTCTTCCTCGTCGCTCTCCTCTTCCTCTTCTCCTTCTCCTTCTCCCACGCCCTCACGCCGTCCGATCTACCCGAGAAGGAAACCAACGGCCGCGATCCAGCCAACACCAAGTTTCCCGAATCCGAATCCAAGCCCGCGACCGCCATACTCTTACCCAGCGAGAAACGTGACTCCGAACCCGCCAAGGTCTTCGAATGGATACCGGAGGCCGCCGATACGAAGCTTCCGGATTCTGATGGCCCCACCATCTTGGCCAACGAAGAGTCGACTGAGTTCACACACAGCGAGTCCGTTCCGTTGACCGTCATCAGCTTCCGCCCCGTCAACCGCCACTTCCCCAGGCGCCCCTTCCCGTTATCGTTCCGTCACGGACACCGTTGCCGCCATGGCCGCCGCCAGGTCGGGCCGTGGAGCCCACGCTTCCACGGAGGAGAACGCGACCGCGACGTCGTTTCGTACGGCGACGACATGATCCTCGGCGACGACTTGGCTTTCGATCAGGTGTTTCACGGCGGACCGCGCCAGATCCCTCCTAGGTGGGGCAGTTTCCGCCACGGTGGGCCCAGGTTCCCGTTCAGGCACGACGACAACATGGAATTGGAGAGGCCGCATCACCATCATCACCATCGCCACGACCACGACCACGACAGCAAAGAATTTGAAGGAATGGAGAAGCCGAGAGAGCACAGGCATGAACACGAACGAGAGCAGGAGGGTGGTTTGATGAGAAGGTTCCGCAAGTTCTTGAACCGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

258

Amino Acids

30.06

Weight (kDa)

6.75

Isoelectric Point (pI)

50.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017661)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g04430
prunus_persica Prupe.5G117500_v2.0.a1
pyrus_communis pycom06g09950
rosa_laevigata RLG00000004147 RLG00000008498
rosa_multiflora Rmu_sc0000884.1_g000001 Rmu_sc0004584.1_g000008
rosa_roxburghii Rroxscaffold_3G00260800
rosa_rugosa Rorug07G0020600
rosa_samantha Rh7BG148600 Rh7CG152200
rosa_wichuraiana Rw7G012630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 461
AatII GACGTC 1 cut(s) 465
AccB1I GGYRCC 1 cut(s) 357
AccI GTMKAC 1 cut(s) 281
AccII CGCG 5 cut(s) 108, 152, 453, 459, 535
AccIII TCCGGA 1 cut(s) 241
AclWI GGATC 3 cut(s) 104, 481, 535
AcoI YGGCCR 4 cut(s) 3, 103, 267, 403
AcsI RAATTY 1 cut(s) 671
AcyI GRCGYC 2 cut(s) 358, 462
AfaI GTAC 1 cut(s) 473
AfiI CCNNNNNNNGG 2 cut(s) 412, 554
AgsI TTSAA 2 cut(s) 677, 763
AjnI CCWGG 3 cut(s) 353, 411, 578
AjuI GAANNNNNNNTTGG 1 cut(s) 31
AluBI AGCT 2 cut(s) 238, 327
AluI AGCT 2 cut(s) 238, 327
Alw21I GWGCWC 1 cut(s) 702
AlwI GGATC 3 cut(s) 104, 481, 535
Ama87I CYCGRG 1 cut(s) 86
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 9 cut(s) 3, 103, 222, 253, 267, 403, 419, 575, 620
ApaI GGGCCC 1 cut(s) 579
ApoI RAATTY 1 cut(s) 671
ArsI GACNNNNNNTTYG 2 cut(s) 491, 523
AspA2I CCTAGG 1 cut(s) 548
AspLEI GCGC 2 cut(s) 360, 537
AspS9I GGNCC 5 cut(s) 254, 419, 530, 575, 576
AsuHPI GGTGA 2 cut(s) 620, 629
AsuII TTCGAA 1 cut(s) 207
AvaI CYCGRG 1 cut(s) 86
AvaII GGWCC 1 cut(s) 530
AvrII CCTAGG 1 cut(s) 548
BaeGI GKGCMC 1 cut(s) 579
BalI TGGCCA 2 cut(s) 5, 269
BanI GGYRCC 1 cut(s) 357
BanII GRGCYC 2 cut(s) 431, 579
BbsI GAAGAC 2 cut(s) 7, 196
Bbv12I GWGCWC 1 cut(s) 702
BccI CCATC 4 cut(s) 245, 269, 639, 648
BceAI ACGGC 5 cut(s) 58, 118, 406, 490, 541
BciT130I CCWGG 3 cut(s) 355, 413, 580
BciVI GTATCC 1 cut(s) 207
BfaI CTAG 1 cut(s) 549
BfoI RGCGCY 1 cut(s) 361
BfuI GTATCC 1 cut(s) 207
BglI GCCNNNNNGGC 1 cut(s) 402
BisI GCNGC 6 cut(s) 106, 225, 397, 406, 409, 623
BlnI CCTAGG 1 cut(s) 548
BlsI GCNGC 6 cut(s) 107, 226, 398, 407, 410, 624
Bme1390I CCNGG 3 cut(s) 355, 413, 580
Bme18I GGWCC 1 cut(s) 530
BmeT110I CYCGRG 1 cut(s) 86
BmgT120I GGNCC 5 cut(s) 254, 419, 530, 575, 576
BmiI GGNNCC 6 cut(s) 256, 359, 428, 577, 584, 749
BmrFI CCNGG 3 cut(s) 355, 413, 580
BmsI GCATC 1 cut(s) 634
BpiI GAAGAC 2 cut(s) 7, 196
Bpu14I TTCGAA 1 cut(s) 207
BsaHI GRCGYC 2 cut(s) 358, 462
BsaJI CCNNGG 9 cut(s) 198, 353, 400, 422, 439, 490, 548, 568, 578
BsaWI WCCGGW 2 cut(s) 217, 241
Bsc4I CCNNNNNNNGG 2 cut(s) 412, 554
BseAI TCCGGA 1 cut(s) 241
BseBI CCWGG 3 cut(s) 355, 413, 580
BseDI CCNNGG 9 cut(s) 198, 353, 400, 422, 439, 490, 548, 568, 578
BseLI CCNNNNNNNGG 2 cut(s) 412, 554
BseMII CTCAG 1 cut(s) 276
BseRI GAGGAG 2 cut(s) 23, 459
BseSI GKGCMC 1 cut(s) 579
BseX3I CGGCCG 1 cut(s) 103
BseYI CCCAGC 1 cut(s) 170
Bsh1236I CGCG 5 cut(s) 108, 152, 453, 459, 535
Bsh1285I CGRYCG 3 cut(s) 106, 156, 457
BshFI GGCC 9 cut(s) 5, 105, 224, 255, 269, 405, 421, 577, 622
BshNI GGYRCC 1 cut(s) 357
BsiEI CGRYCG 3 cut(s) 106, 156, 457
BsiHKAI GWGCWC 1 cut(s) 702
BsiHKCI CYCGRG 1 cut(s) 86
BsiSI CCGG 2 cut(s) 218, 242
BsiWI CGTACG 1 cut(s) 471
BslI CCNNNNNNNGG 2 cut(s) 412, 554
BsnI GGCC 9 cut(s) 5, 105, 224, 255, 269, 405, 421, 577, 622
BsoBI CYCGRG 1 cut(s) 86
Bsp119I TTCGAA 1 cut(s) 207
Bsp120I GGGCCC 1 cut(s) 575
Bsp1286I GDGCHC 3 cut(s) 431, 579, 702
Bsp13I TCCGGA 1 cut(s) 241
Bsp143I GATC 5 cut(s) 79, 109, 486, 511, 540
Bsp19I CCATGG 1 cut(s) 400
BspANI GGCC 9 cut(s) 5, 105, 224, 255, 269, 405, 421, 577, 622
BspCNI CTCAG 1 cut(s) 277
BspEI TCCGGA 1 cut(s) 241
BspFNI CGCG 5 cut(s) 108, 152, 453, 459, 535
BspLI GGNNCC 6 cut(s) 256, 359, 428, 577, 584, 749
BspPI GGATC 3 cut(s) 104, 481, 535
BspT104I TTCGAA 1 cut(s) 207
BspT107I GGYRCC 1 cut(s) 357
BssECI CCNNGG 9 cut(s) 198, 353, 400, 422, 439, 490, 548, 568, 578
BssMI GATC 5 cut(s) 79, 109, 486, 511, 540
BssNI GRCGYC 2 cut(s) 358, 462
BssT1I CCWWGG 3 cut(s) 198, 400, 548
Bst2UI CCWGG 3 cut(s) 355, 413, 580
Bst4CI ACNGT 3 cut(s) 319, 392, 572
Bst6I CTCTTC 3 cut(s) 41, 47, 270
BstACI GRCGYC 2 cut(s) 358, 462
BstBI TTCGAA 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 285
BstDSI CCRYGG 4 cut(s) 400, 422, 439, 568
BstFNI CGCG 5 cut(s) 108, 152, 453, 459, 535
BstH2I RGCGCY 1 cut(s) 361
BstHHI GCGC 2 cut(s) 360, 537
BstKTI GATC 5 cut(s) 82, 112, 489, 514, 543
BstMBI GATC 5 cut(s) 79, 109, 486, 511, 540
BstMCI CGRYCG 3 cut(s) 106, 156, 457
BstMWI GCNNNNNNNGC 5 cut(s) 402, 405, 534, 564, 697
BstNI CCWGG 3 cut(s) 355, 413, 580
BstSCI CCNGG 3 cut(s) 353, 411, 578
BstSLI GKGCMC 1 cut(s) 579
BstUI CGCG 5 cut(s) 108, 152, 453, 459, 535
BstV2I GAAGAC 2 cut(s) 7, 196
BstX2I RGATCY 1 cut(s) 540
BstXI CCANNNNNNTGG 1 cut(s) 265
BstYI RGATCY 1 cut(s) 540
BstZI CGGCCG 1 cut(s) 103
BsuI GTATCC 1 cut(s) 207
BsuRI GGCC 9 cut(s) 5, 105, 224, 255, 269, 405, 421, 577, 622
BtgI CCRYGG 4 cut(s) 400, 422, 439, 568
BtgZI GCGATG 1 cut(s) 626
Cac8I GCNNGC 1 cut(s) 150
CfoI GCGC 2 cut(s) 360, 537
Cfr13I GGNCC 5 cut(s) 254, 419, 530, 575, 576
CpoI CGGWCCG 1 cut(s) 530
Csp6I GTAC 1 cut(s) 472
CspI CGGWCCG 1 cut(s) 530
CviAII CATG 4 cut(s) 401, 484, 607, 707
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 1 cut(s) 285
DinI GGCGCC 1 cut(s) 359
DpnI GATC 5 cut(s) 81, 111, 488, 513, 542
DpnII GATC 5 cut(s) 79, 109, 486, 511, 540
DrdI GACNNNNNNGTC 1 cut(s) 461
DseDI GACNNNNNNGTC 1 cut(s) 461
EaeI YGGCCR 4 cut(s) 3, 103, 267, 403
EagI CGGCCG 1 cut(s) 103
Eam1104I CTCTTC 3 cut(s) 41, 47, 270
EarI CTCTTC 3 cut(s) 41, 47, 270
EciI GGCGGA 3 cut(s) 320, 543, 554
EclXI CGGCCG 1 cut(s) 103
Eco130I CCWWGG 3 cut(s) 198, 400, 548
Eco24I GRGCYC 2 cut(s) 431, 579
Eco47I GGWCC 1 cut(s) 530
Eco52I CGGCCG 1 cut(s) 103
Eco88I CYCGRG 1 cut(s) 86
EcoRII CCWGG 3 cut(s) 353, 411, 578
EcoT14I CCWWGG 3 cut(s) 198, 400, 548
EcoT38I GRGCYC 2 cut(s) 431, 579
EgeI GGCGCC 1 cut(s) 359
EheI GGCGCC 1 cut(s) 359
ErhI CCWWGG 3 cut(s) 198, 400, 548
FaeI CATG 4 cut(s) 404, 487, 610, 710
FaiI YATR 5 cut(s) 161, 402, 485, 608, 708
FatI CATG 4 cut(s) 400, 483, 606, 706
FauI CCCGC 2 cut(s) 157, 202
FblI GTMKAC 1 cut(s) 281
Fnu4HI GCNGC 6 cut(s) 106, 225, 397, 406, 409, 623
FriOI GRGCYC 2 cut(s) 431, 579
Fsp4HI GCNGC 6 cut(s) 106, 225, 397, 406, 409, 623
FspBI CTAG 1 cut(s) 549
GlaI GCGC 2 cut(s) 359, 536
GluI GCNGC 6 cut(s) 106, 225, 397, 406, 409, 623
GsaI CCCAGC 1 cut(s) 174
HaeII RGCGCY 1 cut(s) 361
HaeIII GGCC 9 cut(s) 5, 105, 224, 255, 269, 405, 421, 577, 622
HapII CCGG 2 cut(s) 218, 242
HhaI GCGC 2 cut(s) 360, 537
Hin1I GRCGYC 2 cut(s) 358, 462
Hin1II CATG 4 cut(s) 404, 487, 610, 710
Hin6I GCGC 2 cut(s) 358, 535
HinP1I GCGC 2 cut(s) 358, 535
HincII GTYRAC 3 cut(s) 282, 315, 340
HindII GTYRAC 3 cut(s) 282, 315, 340
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 6 cut(s) 134, 140, 185, 245, 278, 302
HpaII CCGG 2 cut(s) 218, 242
HphI GGTGA 2 cut(s) 620, 629
Hpy166II GTNNAC 4 cut(s) 282, 291, 315, 340
Hpy188I TCNGA 4 cut(s) 79, 139, 190, 250
Hpy188III TCNNGA 3 cut(s) 131, 242, 760
Hpy8I GTNNAC 4 cut(s) 282, 291, 315, 340
Hpy99I CGWCG 6 cut(s) 29, 464, 467, 482, 500, 602
HpyAV CCTTC 6 cut(s) 58, 64, 85, 373, 671, 738
HpyCH4III ACNGT 3 cut(s) 319, 392, 572
HpyCH4IV ACGT 2 cut(s) 181, 462
HpyF10VI GCNNNNNNNGC 5 cut(s) 402, 405, 534, 564, 697
HpyF3I CTNAG 1 cut(s) 285
HpySE526I ACGT 2 cut(s) 181, 462
Hsp92I GRCGYC 2 cut(s) 358, 462
Hsp92II CATG 4 cut(s) 404, 487, 610, 710
HspAI GCGC 2 cut(s) 358, 535
KasI GGCGCC 1 cut(s) 357
Kpn2I TCCGGA 1 cut(s) 241
Kzo9I GATC 5 cut(s) 79, 109, 486, 511, 540
LmnI GCTCC 1 cut(s) 426
LweI GCATC 1 cut(s) 634
MaeI CTAG 1 cut(s) 549
MaeII ACGT 2 cut(s) 181, 462
MaeIII GTNAC 2 cut(s) 182, 380
MalI GATC 5 cut(s) 81, 111, 488, 513, 542
MboI GATC 5 cut(s) 79, 109, 486, 511, 540
MboII GAAGA 6 cut(s) 7, 10, 28, 34, 196, 287
MflI RGATCY 1 cut(s) 540
MhlI GDGCHC 3 cut(s) 431, 579, 702
MlsI TGGCCA 2 cut(s) 5, 269
MluCI AATT 2 cut(s) 611, 671
MluNI TGGCCA 2 cut(s) 5, 269
Mly113I GGCGCC 1 cut(s) 358
MlyI GAGTC 3 cut(s) 179, 287, 311
Mox20I TGGCCA 2 cut(s) 5, 269
MroI TCCGGA 1 cut(s) 241
MscI TGGCCA 2 cut(s) 5, 269
MslI CAYNNNNRTG 1 cut(s) 705
Msp20I TGGCCA 2 cut(s) 5, 269
MspI CCGG 2 cut(s) 218, 242
MspR9I CCNGG 3 cut(s) 355, 413, 580
MvaI CCWGG 3 cut(s) 355, 413, 580
MvnI CGCG 5 cut(s) 108, 152, 453, 459, 535
MwoI GCNNNNNNNGC 5 cut(s) 402, 405, 534, 564, 697
NarI GGCGCC 1 cut(s) 358
NcoI CCATGG 1 cut(s) 400
NdeII GATC 5 cut(s) 79, 109, 486, 511, 540
NlaIII CATG 4 cut(s) 404, 487, 610, 710
NlaIV GGNNCC 6 cut(s) 256, 359, 428, 577, 584, 749
NmeAIII GCCGAG 2 cut(s) 471, 717
NmuCI GTSAC 2 cut(s) 182, 380
NspV TTCGAA 1 cut(s) 207
PfeI GAWTC 3 cut(s) 134, 140, 245
Pfl23II CGTACG 1 cut(s) 471
PkrI GCNGC 6 cut(s) 107, 226, 398, 407, 410, 624
PleI GAGTC 3 cut(s) 179, 286, 310
PluTI GGCGCC 1 cut(s) 361
PpsI GAGTC 3 cut(s) 179, 286, 310
Psp6I CCWGG 3 cut(s) 353, 411, 578
PspFI CCCAGC 1 cut(s) 170
PspGI CCWGG 3 cut(s) 353, 411, 578
PspLI CGTACG 1 cut(s) 471
PspN4I GGNNCC 6 cut(s) 256, 359, 428, 577, 584, 749
PspOMI GGGCCC 1 cut(s) 575
PspPI GGNCC 5 cut(s) 254, 419, 530, 575, 576
PsuI RGATCY 1 cut(s) 540
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
RseI CAYNNNNRTG 1 cut(s) 705
Rsr2I CGGWCCG 1 cut(s) 530
RsrII CGGWCCG 1 cut(s) 530
SalI GTCGAC 1 cut(s) 280
SatI GCNGC 6 cut(s) 106, 225, 397, 406, 409, 623
Sau3AI GATC 5 cut(s) 79, 109, 486, 511, 540
Sau96I GGNCC 5 cut(s) 254, 419, 530, 575, 576
SchI GAGTC 3 cut(s) 179, 287, 311
ScrFI CCNGG 3 cut(s) 355, 413, 580
SduI GDGCHC 3 cut(s) 431, 579, 702
SfaNI GCATC 1 cut(s) 634
SfoI GGCGCC 1 cut(s) 359
SfuI TTCGAA 1 cut(s) 207
SinI GGWCC 1 cut(s) 530
SmiMI CAYNNNNRTG 1 cut(s) 705
Sse9I AATT 2 cut(s) 611, 671
SspDI GGCGCC 1 cut(s) 357
SspMI CTAG 1 cut(s) 549
StyD4I CCNGG 3 cut(s) 353, 411, 578
StyI CCWWGG 3 cut(s) 198, 400, 548
TaaI ACNGT 3 cut(s) 319, 392, 572
TaiI ACGT 2 cut(s) 184, 465
TaqI TCGA 3 cut(s) 207, 281, 510
TasI AATT 2 cut(s) 611, 671
TauI GCSGC 6 cut(s) 108, 227, 399, 408, 411, 625
TfiI GAWTC 3 cut(s) 134, 140, 245
TseFI GTSAC 2 cut(s) 182, 380
Tsp45I GTSAC 2 cut(s) 182, 380
TspDTI ATGAA 1 cut(s) 723
TspGWI ACGGA 5 cut(s) 295, 300, 368, 399, 456
VpaK11BI GGWCC 1 cut(s) 530
XapI RAATTY 1 cut(s) 671
XmaJI CCTAGG 1 cut(s) 548
XmiI GTMKAC 1 cut(s) 281
XspI CTAG 1 cut(s) 549
ZraI GACGTC 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.