Rroxscaffold_3G00260800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0017661
Physical Location & Seq
Forward (+)
55109935 .. 55110780
846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00260800.1

Sequence Viewer

Length: 846 bp
ATGGCCAAGCTCATCTTCACCGCCGCCGCCCTCTTCCTCCTCTTCGCCTTCTCCCATGCCCGCGCCCCGTCCGATCTCCCCAACGGCCGTGATGATGCAACAGACAACAAGATCCCGGTAGCCGATGCCGAACCGTTTAAGGCTACCACCAACACTCTACGTTTACCGAGCGAGAGACCCGGGTCCGAGTCCGGACCCGTTGTGGAATTGGAGGAGACCGAGACCGTCCCCGTCGCCGAGGAGGAGAAGAAGCTTCCGGAAGCCGAGTTCGCCACCATCGAATCGAACGAGGAGAACACCGCTGATGCGTCGAAATCGGAGGCCGTTCCGTTGACCATCATCAGCTTCCGCCCCGTCGGCCGCCACTTCCCCCGCCGTCCGTTCCCGTTGTCTCTCCGTCCGGGTCACCGCTGCGGCCACGGTCGCCGCCAGCCCAAGCGGTGGACCCCGCGCTTCCACGGCAGCGAGCGCGAGAAGGACACTCCCTACGGCGACGACATGATCTTGTCCTCCGGCGACGAGATGAAGTTCGATCGTCCGTTCCGCGGCGGAGCTCGCCAGATCCCGGCTAGGTGGTTCAACTTCCGCCACGGCGGACCTAGATTCCCTTACAAACACGACGATGACATGGAATCCGAGAGGCCTCACCGCCACCATCGCCGCCATCACCACCACGATCACGACTTGGACCAAGAAAATGAGGTAGAGGAGGACCACGGGGAGCACGAGCACGAGCACGAGCATGAGCACGAGCACAGGCACGAGCACGAGCACGAGCACGAGCACAGGCACGAGCACAGGGGTGGTTTGTTCAGGGGCTTCCGAAAGTTCTTGAACCGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

281

Amino Acids

32.83

Weight (kDa)

6.17

Isoelectric Point (pI)

53.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017661)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g04430
prunus_persica Prupe.5G117500_v2.0.a1
pyrus_communis pycom06g09950
rosa_laevigata RLG00000004147 RLG00000008498
rosa_multiflora Rmu_sc0000884.1_g000001 Rmu_sc0004584.1_g000008
rosa_roxburghii Rroxscaffold_3G00260800
rosa_rugosa Rorug07G0020600
rosa_samantha Rh7BG148600 Rh7CG152200
rosa_wichuraiana Rw7G012630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 441
AccII CGCG 4 cut(s) 63, 451, 471, 546
AccIII TCCGGA 2 cut(s) 191, 256
AclWI GGATC 2 cut(s) 106, 556
AcoI YGGCCR 4 cut(s) 3, 85, 358, 415
AfiI CCNNNNNNNGG 3 cut(s) 441, 545, 565
AgsI TTSAA 2 cut(s) 580, 835
AjuI GAANNNNNNNTTGG 1 cut(s) 31
AleI CACNNNNGTG 1 cut(s) 801
AloI GAACNNNNNNTCC 2 cut(s) 251, 283
AluBI AGCT 4 cut(s) 10, 253, 345, 554
AluI AGCT 4 cut(s) 10, 253, 345, 554
Alw26I GTCTC 4 cut(s) 169, 209, 215, 396
AlwI GGATC 2 cut(s) 106, 556
Ama87I CYCGRG 1 cut(s) 179
Aor13HI TCCGGA 2 cut(s) 191, 256
AoxI GGCC 6 cut(s) 3, 85, 321, 358, 415, 641
ApeKI GCWGC 2 cut(s) 411, 462
AspLEI GCGC 3 cut(s) 65, 453, 471
AspS9I GGNCC 6 cut(s) 183, 194, 444, 596, 688, 712
AsuC2I CCSGG 5 cut(s) 116, 180, 181, 402, 566
AsuHPI GGTGA 4 cut(s) 10, 398, 638, 659
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 6 cut(s) 183, 194, 444, 596, 688, 712
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 556
BauI CACGAG 9 cut(s) 725, 731, 737, 749, 761, 767, 773, 779, 791
BbvI GCAGC 2 cut(s) 398, 474
BccI CCATC 4 cut(s) 284, 344, 663, 672
BceAI ACGGC 7 cut(s) 72, 100, 308, 360, 475, 505, 607
BcnI CCSGG 5 cut(s) 116, 180, 181, 402, 566
BcoDI GTCTC 4 cut(s) 169, 209, 215, 396
BfaI CTAG 2 cut(s) 570, 600
BglI GCCNNNNNGGC 1 cut(s) 357
BisI GCNGC 9 cut(s) 24, 27, 361, 412, 415, 427, 463, 547, 661
BlsI GCNGC 9 cut(s) 25, 28, 362, 413, 416, 428, 464, 548, 662
Bme1390I CCNGG 5 cut(s) 116, 180, 181, 402, 566
Bme18I GGWCC 6 cut(s) 183, 194, 444, 596, 688, 712
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 6 cut(s) 183, 194, 444, 596, 688, 712
BmiI GGNNCC 3 cut(s) 184, 196, 446
BmrFI CCNGG 5 cut(s) 116, 180, 181, 402, 566
BmsI GCATC 3 cut(s) 85, 115, 295
BoxI GACNNNNGTC 1 cut(s) 181
BpuMI CCSGG 5 cut(s) 116, 180, 181, 402, 566
BsaI GGTCTC 3 cut(s) 169, 209, 215
BsaJI CCNNGG 7 cut(s) 179, 237, 418, 457, 544, 589, 715
BsaWI WCCGGW 2 cut(s) 191, 256
Bsc4I CCNNNNNNNGG 3 cut(s) 441, 545, 565
BseAI TCCGGA 2 cut(s) 191, 256
BseDI CCNNGG 7 cut(s) 179, 237, 418, 457, 544, 589, 715
BseLI CCNNNNNNNGG 3 cut(s) 441, 545, 565
BseRI GAGGAG 6 cut(s) 29, 227, 254, 257, 305, 722
BseX3I CGGCCG 2 cut(s) 85, 358
BseXI GCAGC 2 cut(s) 398, 474
Bsh1236I CGCG 4 cut(s) 63, 451, 471, 546
Bsh1285I CGRYCG 4 cut(s) 88, 361, 424, 535
BshFI GGCC 6 cut(s) 5, 87, 323, 360, 417, 643
BsiEI CGRYCG 4 cut(s) 88, 361, 424, 535
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 7 cut(s) 116, 180, 192, 257, 401, 513, 566
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 3 cut(s) 441, 545, 565
BsmAI GTCTC 4 cut(s) 169, 209, 215, 396
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 6 cut(s) 5, 87, 323, 360, 417, 643
Bso31I GGTCTC 3 cut(s) 169, 209, 215
BsoBI CYCGRG 1 cut(s) 179
Bsp13I TCCGGA 2 cut(s) 191, 256
Bsp143I GATC 6 cut(s) 73, 111, 501, 532, 561, 676
BspANI GGCC 6 cut(s) 5, 87, 323, 360, 417, 643
BspEI TCCGGA 2 cut(s) 191, 256
BspFNI CGCG 4 cut(s) 63, 451, 471, 546
BspLI GGNNCC 3 cut(s) 184, 196, 446
BspPI GGATC 2 cut(s) 106, 556
BspTNI GGTCTC 3 cut(s) 169, 209, 215
BssECI CCNNGG 7 cut(s) 179, 237, 418, 457, 544, 589, 715
BssMI GATC 6 cut(s) 73, 111, 501, 532, 561, 676
BssSI CACGAG 9 cut(s) 725, 731, 737, 749, 761, 767, 773, 779, 791
Bst2BI CACGAG 9 cut(s) 725, 731, 737, 749, 761, 767, 773, 779, 791
Bst4CI ACNGT 3 cut(s) 135, 226, 422
Bst6I CTCTTC 2 cut(s) 38, 47
BstC8I GCNNGC 4 cut(s) 61, 431, 467, 556
BstDSI CCRYGG 5 cut(s) 418, 457, 544, 589, 715
BstEII GGTNACC 1 cut(s) 404
BstFNI CGCG 4 cut(s) 63, 451, 471, 546
BstHHI GCGC 3 cut(s) 65, 453, 471
BstKTI GATC 6 cut(s) 76, 114, 504, 535, 564, 679
BstMAI GTCTC 4 cut(s) 169, 209, 215, 396
BstMBI GATC 6 cut(s) 73, 111, 501, 532, 561, 676
BstMCI CGRYCG 4 cut(s) 88, 361, 424, 535
BstMWI GCNNNNNNNGC 7 cut(s) 269, 357, 423, 459, 468, 555, 657
BstPAI GACNNNNGTC 1 cut(s) 181
BstPI GGTNACC 1 cut(s) 404
BstSCI CCNGG 5 cut(s) 114, 178, 179, 400, 564
BstUI CGCG 4 cut(s) 63, 451, 471, 546
BstV1I GCAGC 2 cut(s) 398, 474
BstX2I RGATCY 2 cut(s) 111, 561
BstYI RGATCY 2 cut(s) 111, 561
BstZI CGGCCG 2 cut(s) 85, 358
BsuRI GGCC 6 cut(s) 5, 87, 323, 360, 417, 643
BtgI CCRYGG 5 cut(s) 418, 457, 544, 589, 715
BtgZI GCGATG 1 cut(s) 641
Cac8I GCNNGC 4 cut(s) 61, 431, 467, 556
CfoI GCGC 3 cut(s) 65, 453, 471
Cfr13I GGNCC 6 cut(s) 183, 194, 444, 596, 688, 712
Cfr42I CCGCGG 1 cut(s) 547
Cfr9I CCCGGG 1 cut(s) 179
CseI GACGC 1 cut(s) 297
CviAII CATG 4 cut(s) 56, 499, 628, 743
DpnI GATC 6 cut(s) 75, 113, 503, 534, 563, 678
DpnII GATC 6 cut(s) 73, 111, 501, 532, 561, 676
EaeI YGGCCR 4 cut(s) 3, 85, 358, 415
EagI CGGCCG 2 cut(s) 85, 358
Eam1104I CTCTTC 2 cut(s) 38, 47
EarI CTCTTC 2 cut(s) 38, 47
EciI GGCGGA 4 cut(s) 338, 564, 575, 609
Ecl136II GAGCTC 1 cut(s) 554
EclXI CGGCCG 2 cut(s) 85, 358
Eco147I AGGCCT 1 cut(s) 643
Eco24I GRGCYC 1 cut(s) 556
Eco31I GGTCTC 3 cut(s) 169, 209, 215
Eco47I GGWCC 6 cut(s) 183, 194, 444, 596, 688, 712
Eco52I CGGCCG 2 cut(s) 85, 358
Eco53kI GAGCTC 1 cut(s) 554
Eco88I CYCGRG 1 cut(s) 179
Eco91I GGTNACC 1 cut(s) 404
EcoICRI GAGCTC 1 cut(s) 554
EcoO65I GGTNACC 1 cut(s) 404
EcoT38I GRGCYC 1 cut(s) 556
FaeI CATG 4 cut(s) 59, 502, 631, 746
FaiI YATR 4 cut(s) 57, 500, 629, 744
FalI AAGNNNNNCTT 1 cut(s) 31
FaqI GGGAC 1 cut(s) 212
FatI CATG 4 cut(s) 55, 498, 627, 742
FauI CCCGC 3 cut(s) 68, 380, 456
Fnu4HI GCNGC 9 cut(s) 24, 27, 361, 412, 415, 427, 463, 547, 661
FriOI GRGCYC 1 cut(s) 556
Fsp4HI GCNGC 9 cut(s) 24, 27, 361, 412, 415, 427, 463, 547, 661
FspBI CTAG 2 cut(s) 570, 600
GlaI GCGC 3 cut(s) 64, 452, 470
GluI GCNGC 9 cut(s) 24, 27, 361, 412, 415, 427, 463, 547, 661
HaeIII GGCC 6 cut(s) 5, 87, 323, 360, 417, 643
HapII CCGG 7 cut(s) 116, 180, 192, 257, 401, 513, 566
HgaI GACGC 1 cut(s) 297
HhaI GCGC 3 cut(s) 65, 453, 471
Hin1II CATG 4 cut(s) 59, 502, 631, 746
Hin6I GCGC 3 cut(s) 63, 451, 469
HinP1I GCGC 3 cut(s) 63, 451, 469
HincII GTYRAC 1 cut(s) 333
HindII GTYRAC 1 cut(s) 333
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 4 cut(s) 188, 281, 603, 632
HpaII CCGG 7 cut(s) 116, 180, 192, 257, 401, 513, 566
HphI GGTGA 4 cut(s) 10, 398, 638, 659
Hpy166II GTNNAC 3 cut(s) 164, 333, 444
Hpy188I TCNGA 5 cut(s) 73, 187, 319, 637, 824
Hpy188III TCNNGA 4 cut(s) 192, 257, 680, 832
Hpy8I GTNNAC 3 cut(s) 164, 333, 444
Hpy99I CGWCG 6 cut(s) 236, 313, 359, 497, 521, 623
HpyAV CCTTC 2 cut(s) 58, 469
HpyCH4III ACNGT 3 cut(s) 135, 226, 422
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 98
HpyF10VI GCNNNNNNNGC 7 cut(s) 269, 357, 423, 459, 468, 555, 657
HpySE526I ACGT 1 cut(s) 160
Hsp92II CATG 4 cut(s) 59, 502, 631, 746
HspAI GCGC 3 cut(s) 63, 451, 469
Kpn2I TCCGGA 2 cut(s) 191, 256
KspI CCGCGG 1 cut(s) 547
Kzo9I GATC 6 cut(s) 73, 111, 501, 532, 561, 676
LmnI GCTCC 2 cut(s) 551, 721
Lsp1109I GCAGC 2 cut(s) 398, 474
LweI GCATC 3 cut(s) 85, 115, 295
MaeI CTAG 2 cut(s) 570, 600
MaeII ACGT 1 cut(s) 160
MaeIII GTNAC 1 cut(s) 404
MalI GATC 6 cut(s) 75, 113, 503, 534, 563, 678
MboI GATC 6 cut(s) 73, 111, 501, 532, 561, 676
MboII GAAGA 4 cut(s) 7, 25, 34, 259
MflI RGATCY 2 cut(s) 111, 561
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 206
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 197
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 2 cut(s) 191, 256
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 138
MslI CAYNNNNRTG 3 cut(s) 621, 741, 801
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 3 cut(s) 302, 411, 546
MspI CCGG 7 cut(s) 116, 180, 192, 257, 401, 513, 566
MspR9I CCNGG 5 cut(s) 116, 180, 181, 402, 566
MvnI CGCG 4 cut(s) 63, 451, 471, 546
MwoI GCNNNNNNNGC 7 cut(s) 269, 357, 423, 459, 468, 555, 657
NciI CCSGG 5 cut(s) 116, 180, 181, 402, 566
NdeII GATC 6 cut(s) 73, 111, 501, 532, 561, 676
NlaIII CATG 4 cut(s) 59, 502, 631, 746
NlaIV GGNNCC 3 cut(s) 184, 196, 446
NmeAIII GCCGAG 2 cut(s) 262, 289
NmuCI GTSAC 1 cut(s) 404
OliI CACNNNNGTG 1 cut(s) 801
PceI AGGCCT 1 cut(s) 643
PcsI WCGNNNNNNNCGW 3 cut(s) 276, 285, 723
PfeI GAWTC 3 cut(s) 281, 603, 632
PflMI CCANNNNNTGG 1 cut(s) 441
PkrI GCNGC 9 cut(s) 25, 28, 362, 413, 416, 428, 464, 548, 662
Ple19I CGATCG 1 cut(s) 535
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PshAI GACNNNNGTC 1 cut(s) 181
Psp124BI GAGCTC 1 cut(s) 556
PspEI GGTNACC 1 cut(s) 404
PspN4I GGNNCC 3 cut(s) 184, 196, 446
PspPI GGNCC 6 cut(s) 183, 194, 444, 596, 688, 712
PsuI RGATCY 2 cut(s) 111, 561
PvuI CGATCG 1 cut(s) 535
RseI CAYNNNNRTG 3 cut(s) 621, 741, 801
SacI GAGCTC 1 cut(s) 556
SacII CCGCGG 1 cut(s) 547
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 9 cut(s) 24, 27, 361, 412, 415, 427, 463, 547, 661
Sau3AI GATC 6 cut(s) 73, 111, 501, 532, 561, 676
Sau96I GGNCC 6 cut(s) 183, 194, 444, 596, 688, 712
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 5 cut(s) 116, 180, 181, 402, 566
SetI ASST 8 cut(s) 12, 163, 255, 347, 556, 575, 601, 705
SfaNI GCATC 3 cut(s) 85, 115, 295
Sfr303I CCGCGG 1 cut(s) 547
SgrBI CCGCGG 1 cut(s) 547
SinI GGWCC 6 cut(s) 183, 194, 444, 596, 688, 712
SmaI CCCGGG 1 cut(s) 181
SmiMI CAYNNNNRTG 3 cut(s) 621, 741, 801
Sse9I AATT 1 cut(s) 206
SseBI AGGCCT 1 cut(s) 643
SspMI CTAG 2 cut(s) 570, 600
SstI GAGCTC 1 cut(s) 556
StuI AGGCCT 1 cut(s) 643
StyD4I CCNGG 5 cut(s) 114, 178, 179, 400, 564
TaaI ACNGT 3 cut(s) 135, 226, 422
TaiI ACGT 1 cut(s) 163
TaqI TCGA 4 cut(s) 279, 284, 311, 531
TaqII GACCGA 1 cut(s) 233
TasI AATT 1 cut(s) 206
TauI GCSGC 7 cut(s) 26, 29, 363, 417, 429, 549, 663
TfiI GAWTC 3 cut(s) 281, 603, 632
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TseFI GTSAC 1 cut(s) 404
TseI GCWGC 2 cut(s) 411, 462
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 1 cut(s) 539
TspGWI ACGGA 4 cut(s) 318, 369, 386, 528
TspMI CCCGGG 1 cut(s) 179
Van91I CCANNNNNTGG 1 cut(s) 441
VpaK11BI GGWCC 6 cut(s) 183, 194, 444, 596, 688, 712
XmaI CCCGGG 1 cut(s) 179
XspI CTAG 2 cut(s) 570, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.