Rorug07G0020600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0017661
Physical Location & Seq
Forward (+)
1533806 .. 1534693
888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0020600.1

Sequence Viewer

Length: 696 bp
ATGGGAATCGAAGAGGTTAAAGATGTCAGCCTTCAAGTAGGAGACTTTGGTCTACAGGAAAATGAGAGACATGAACCAGATGCAGAGACAAATATTGCAGAAGTTGTGACAAAGAATTTGGAGCCGATTTGCAACGTTAAGGGACGGAGAAATGAGTTTTGCGAGATCAACAAGGATGTTCGGGTGGATGGGAAATCGGCTTCAGTGTTTATTGTTTCATCTGAAATGGATCTAGGAGATGGGAATAGCTCCTGGACAATAAGACCATATGTTCGAAAAGAAGACAAAGGGGCAATGAGGGATACACAAAAATGGTCAGTGCAACAAGTAACTAGTTTCCAGGAAATGCCTCAATGTACGCGAAATCACACTGTTCCAGCCATCTTGTTTTCAACTGGAGGATATACAGGAAACCATTTCCATGAATTTGCTGATGTGGTTATTCCGCTCTATATTAATTCTCAAAAATATGACGGAGAAGTTCAATTTCTTATCACTGACAAACGATCTTGGTGGATTACAAAGTACAAAGCATTACTACAAGGACTATCCAAGTATGAGGCTATTAACATTGATGAAGATGTAGTCCACTGCTTCCCAAGCACAACAGTTGGCCTTAAACGACATCCCAAGGATCTGACCCTTGATCCTTCACTATATTCCTATTCTATGAAAGATTTCAGAGATTTCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

26.44

Weight (kDa)

5.3

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017661)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g04430
prunus_persica Prupe.5G117500_v2.0.a1
pyrus_communis pycom06g09950
rosa_laevigata RLG00000004147 RLG00000008498
rosa_multiflora Rmu_sc0000884.1_g000001 Rmu_sc0004584.1_g000008
rosa_roxburghii Rroxscaffold_3G00260800
rosa_rugosa Rorug07G0020600
rosa_samantha Rh7BG148600 Rh7CG152200
rosa_wichuraiana Rw7G012630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 448
AccI GTMKAC 1 cut(s) 52
AccII CGCG 1 cut(s) 361
AciI CCGC 1 cut(s) 446
AclI AACGTT 1 cut(s) 135
AclWI GGATC 3 cut(s) 237, 641, 642
AcsI RAATTY 2 cut(s) 115, 425
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 2 cut(s) 358, 527
AgsI TTSAA 3 cut(s) 35, 393, 485
AhlI ACTAGT 1 cut(s) 332
AjnI CCWGG 2 cut(s) 251, 339
AluBI AGCT 1 cut(s) 249
AluI AGCT 1 cut(s) 249
Alw26I GTCTC 3 cut(s) 36, 61, 80
AlwI GGATC 3 cut(s) 237, 641, 642
AoxI GGCC 1 cut(s) 613
ApoI RAATTY 2 cut(s) 115, 425
ArsI GACNNNNNNTTYG 4 cut(s) 100, 132, 255, 287
AseI ATTAAT 1 cut(s) 456
Asp700I GAANNNNTTC 1 cut(s) 677
AsuII TTCGAA 1 cut(s) 274
BbsI GAAGAC 1 cut(s) 288
BccI CCATC 3 cut(s) 182, 233, 389
BciT130I CCWGG 2 cut(s) 253, 341
BciVI GTATCC 1 cut(s) 295
BcoDI GTCTC 3 cut(s) 36, 61, 80
BcuI ACTAGT 1 cut(s) 332
BfaI CTAG 2 cut(s) 233, 333
BfmI CTRYAG 1 cut(s) 53
BfuI GTATCC 1 cut(s) 295
Bme1390I CCNGG 2 cut(s) 253, 341
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 2 cut(s) 253, 341
BmsI GCATC 1 cut(s) 70
BoxI GACNNNNGTC 1 cut(s) 48
BpiI GAAGAC 1 cut(s) 288
BpmI CTGGAG 1 cut(s) 417
Bpu14I TTCGAA 1 cut(s) 274
BsaJI CCNNGG 1 cut(s) 630
Bse1I ACTGG 1 cut(s) 400
Bse3DI GCAATG 1 cut(s) 300
BseBI CCWGG 2 cut(s) 253, 341
BseDI CCNNGG 1 cut(s) 630
BseGI GGATG 3 cut(s) 181, 193, 625
BseMI GCAATG 1 cut(s) 300
BseNI ACTGG 1 cut(s) 400
Bsh1236I CGCG 1 cut(s) 361
BshFI GGCC 1 cut(s) 615
BslFI GGGAC 1 cut(s) 156
BsmAI GTCTC 3 cut(s) 36, 61, 80
BsmFI GGGAC 1 cut(s) 156
BsnI GGCC 1 cut(s) 615
Bsp119I TTCGAA 1 cut(s) 274
Bsp143I GATC 5 cut(s) 165, 229, 506, 634, 646
BspACI CCGC 1 cut(s) 446
BspANI GGCC 1 cut(s) 615
BspFNI CGCG 1 cut(s) 361
BspLI GGNNCC 1 cut(s) 123
BspPI GGATC 3 cut(s) 237, 641, 642
BspT104I TTCGAA 1 cut(s) 274
BsrBI CCGCTC 1 cut(s) 448
BsrDI GCAATG 1 cut(s) 300
BsrI ACTGG 1 cut(s) 400
BssECI CCNNGG 1 cut(s) 630
BssMI GATC 5 cut(s) 165, 229, 506, 634, 646
BssT1I CCWWGG 1 cut(s) 630
Bst2UI CCWGG 2 cut(s) 253, 341
Bst4CI ACNGT 2 cut(s) 373, 610
Bst6I CTCTTC 1 cut(s) 6
BstBI TTCGAA 1 cut(s) 274
BstF5I GGATG 3 cut(s) 181, 193, 625
BstFNI CGCG 1 cut(s) 361
BstKTI GATC 5 cut(s) 168, 232, 509, 637, 649
BstMAI GTCTC 3 cut(s) 36, 61, 80
BstMBI GATC 5 cut(s) 165, 229, 506, 634, 646
BstMWI GCNNNNNNNGC 1 cut(s) 600
BstNI CCWGG 2 cut(s) 253, 341
BstPAI GACNNNNGTC 1 cut(s) 48
BstSCI CCNGG 2 cut(s) 251, 339
BstSFI CTRYAG 1 cut(s) 53
BstUI CGCG 1 cut(s) 361
BstV2I GAAGAC 1 cut(s) 288
BstX2I RGATCY 2 cut(s) 229, 634
BstYI RGATCY 2 cut(s) 229, 634
BsuI GTATCC 1 cut(s) 295
BsuRI GGCC 1 cut(s) 615
BtsCI GGATG 3 cut(s) 181, 193, 625
BtsI GCAGTG 1 cut(s) 589
BtsIMutI CAGTG 5 cut(s) 210, 324, 369, 495, 589
Csp6I GTAC 2 cut(s) 357, 526
CviAII CATG 2 cut(s) 71, 422
CviJI RGCY 7 cut(s) 30, 124, 200, 249, 380, 563, 615
CviKI_1 RGCY 7 cut(s) 30, 124, 200, 249, 380, 563, 615
CviQI GTAC 2 cut(s) 357, 526
DpnI GATC 5 cut(s) 167, 231, 508, 636, 648
DpnII GATC 5 cut(s) 165, 229, 506, 634, 646
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 630
Eco57I CTGAAG 1 cut(s) 186
EcoRII CCWGG 2 cut(s) 251, 339
EcoT14I CCWWGG 1 cut(s) 630
ErhI CCWWGG 1 cut(s) 630
FaeI CATG 2 cut(s) 74, 425
FaqI GGGAC 1 cut(s) 156
FatI CATG 2 cut(s) 70, 421
FauNDI CATATG 1 cut(s) 268
FblI GTMKAC 1 cut(s) 52
FokI GGATG 3 cut(s) 188, 200, 612
FspBI CTAG 2 cut(s) 233, 333
GsuI CTGGAG 1 cut(s) 417
HaeIII GGCC 1 cut(s) 615
Hin1II CATG 2 cut(s) 74, 425
HinfI GANTC 1 cut(s) 6
Hpy166II GTNNAC 2 cut(s) 53, 589
Hpy188I TCNGA 3 cut(s) 223, 639, 683
Hpy8I GTNNAC 2 cut(s) 53, 589
HpyAV CCTTC 2 cut(s) 41, 660
HpyCH4III ACNGT 2 cut(s) 373, 610
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 4 cut(s) 83, 98, 132, 322
HpyF10VI GCNNNNNNNGC 1 cut(s) 600
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 2 cut(s) 74, 425
Kzo9I GATC 5 cut(s) 165, 229, 506, 634, 646
LmnI GCTCC 2 cut(s) 121, 254
LpnPI CCDG 9 cut(s) 41, 90, 238, 265, 326, 353, 381, 390, 393
LweI GCATC 1 cut(s) 70
MaeI CTAG 2 cut(s) 233, 333
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 2 cut(s) 106, 328
MalI GATC 5 cut(s) 167, 231, 508, 636, 648
MbiI CCGCTC 1 cut(s) 448
MboI GATC 5 cut(s) 165, 229, 506, 634, 646
MboII GAAGA 3 cut(s) 23, 293, 590
MflI RGATCY 2 cut(s) 229, 634
MluCI AATT 4 cut(s) 115, 425, 457, 485
MnlI CCTC 5 cut(s) 7, 291, 360, 392, 553
MroXI GAANNNNTTC 1 cut(s) 677
MseI TTAA 5 cut(s) 18, 138, 456, 567, 618
MslI CAYNNNNRTG 2 cut(s) 310, 420
MspR9I CCNGG 2 cut(s) 253, 341
MvaI CCWGG 2 cut(s) 253, 341
MvnI CGCG 1 cut(s) 361
MwoI GCNNNNNNNGC 1 cut(s) 600
NdeI CATATG 1 cut(s) 268
NdeII GATC 5 cut(s) 165, 229, 506, 634, 646
NlaIII CATG 2 cut(s) 74, 425
NlaIV GGNNCC 1 cut(s) 123
NmuCI GTSAC 1 cut(s) 106
NspV TTCGAA 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 677
PfeI GAWTC 1 cut(s) 6
PfoI TCCNGGA 2 cut(s) 251, 339
PshAI GACNNNNGTC 1 cut(s) 48
PshBI ATTAAT 1 cut(s) 456
Psp1406I AACGTT 1 cut(s) 135
Psp6I CCWGG 2 cut(s) 251, 339
PspGI CCWGG 2 cut(s) 251, 339
PspN4I GGNNCC 1 cut(s) 123
PsuI RGATCY 2 cut(s) 229, 634
RsaI GTAC 2 cut(s) 358, 527
RsaNI GTAC 2 cut(s) 357, 526
RseI CAYNNNNRTG 2 cut(s) 310, 420
SaqAI TTAA 5 cut(s) 18, 138, 456, 567, 618
Sau3AI GATC 5 cut(s) 165, 229, 506, 634, 646
ScrFI CCNGG 2 cut(s) 253, 341
SetI ASST 3 cut(s) 18, 138, 251
SfaNI GCATC 1 cut(s) 70
SfcI CTRYAG 1 cut(s) 53
SfuI TTCGAA 1 cut(s) 274
SmiMI CAYNNNNRTG 2 cut(s) 310, 420
SpeI ACTAGT 1 cut(s) 332
Sse9I AATT 4 cut(s) 115, 425, 457, 485
SsiI CCGC 1 cut(s) 446
SspI AATATT 1 cut(s) 94
SspMI CTAG 2 cut(s) 233, 333
StyD4I CCNGG 2 cut(s) 251, 339
StyI CCWWGG 1 cut(s) 630
TaaI ACNGT 2 cut(s) 373, 610
TaiI ACGT 1 cut(s) 138
TaqI TCGA 2 cut(s) 9, 274
TasI AATT 4 cut(s) 115, 425, 457, 485
TatI WGTACW 1 cut(s) 525
TfiI GAWTC 1 cut(s) 6
Tru1I TTAA 5 cut(s) 18, 138, 456, 567, 618
Tru9I TTAA 5 cut(s) 18, 138, 456, 567, 618
TscAI CASTG 5 cut(s) 210, 324, 376, 502, 596
TseFI GTSAC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 5 cut(s) 87, 207, 438, 591, 686
TspGWI ACGGA 2 cut(s) 160, 489
TspRI CASTG 5 cut(s) 210, 324, 376, 502, 596
VspI ATTAAT 1 cut(s) 456
XapI RAATTY 2 cut(s) 115, 425
XmiI GTMKAC 1 cut(s) 52
XmnI GAANNNNTTC 1 cut(s) 677
XspI CTAG 2 cut(s) 233, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.