Rmu_sc0004584.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004584.1
OG0017661
Physical Location & Seq
Forward (+)
25010 .. 26259
1250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004584.1_g000008.1.cds

Sequence Viewer

Length: 819 bp
atgtcatggattcgagtcaccatggggttacgccattgtggagaaactactgatatagttttggttaaatgttcaactcatgattttatacttgatcaatatggtgtttggtcagcagacaacaagatcccggtaaccgatgccgaaccgtttaaggctaccaccaacactctacgtttaccgagcgagagacccgggtccgaatccggacccgttgtggaattggaggagaccgaggccttccccgtcgccgaggaggagaagaagcttccggaagccgagttcaccaccatcgaatcgaacgaggagaacaccgccgatgcgtcgaaatccgaggccgttccgttgaccgtcatcagcttccgccccgtcggccgccacttcccccgccgtccgttcccgttgtctatccgtccgggtcaccgctgcggccacggtcgccgccagcccaggcggtggaccccgcgcttccacggcagcgagcgcgagaaggacattccctacggcgacgacatgatcttgtcctccggcgacgagatgaagttcgatcgtccgttccgcggcggagcgcgccagatcccggccaggtggttcaacttccgccacggcggacctagattcccttacaaacacgacgatgacatggaatccgagaggcctcaccgccaccatcgccgccaccaccaccacgatcacgacttggaccaagaaaatgaggtagagaagaaccacagggagcataaacatgaacacgagcacgagcacgagcacaggggtggtttgttcaggggcttccgcaagttcttgaaccgcttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

31.93

Weight (kDa)

6.64

Isoelectric Point (pI)

54.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017661)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g04430
prunus_persica Prupe.5G117500_v2.0.a1
pyrus_communis pycom06g09950
rosa_laevigata RLG00000004147 RLG00000008498
rosa_multiflora Rmu_sc0000884.1_g000001 Rmu_sc0004584.1_g000008
rosa_roxburghii Rroxscaffold_3G00260800
rosa_rugosa Rorug07G0020600
rosa_samantha Rh7BG148600 Rh7CG152200
rosa_wichuraiana Rw7G012630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 456
AccII CGCG 4 cut(s) 466, 486, 561, 571
AccIII TCCGGA 2 cut(s) 206, 271
AclWI GGATC 2 cut(s) 121, 571
AcoI YGGCCR 3 cut(s) 373, 430, 582
AfiI CCNNNNNNNGG 3 cut(s) 456, 560, 580
AgsI TTSAA 3 cut(s) 75, 595, 808
AjnI CCWGG 2 cut(s) 449, 584
AleI CACNNNNGTG 1 cut(s) 774
AloI GAACNNNNNNTCC 2 cut(s) 266, 298
AluBI AGCT 2 cut(s) 268, 360
AluI AGCT 2 cut(s) 268, 360
Alw21I GWGCWC 3 cut(s) 759, 765, 771
Alw26I GTCTC 2 cut(s) 184, 224
AlwI GGATC 2 cut(s) 121, 571
Ama87I CYCGRG 1 cut(s) 194
Aor13HI TCCGGA 2 cut(s) 206, 271
AoxI GGCC 6 cut(s) 237, 336, 373, 430, 582, 656
ApeKI GCWGC 2 cut(s) 426, 477
AspLEI GCGC 4 cut(s) 468, 486, 571, 573
AspS9I GGNCC 5 cut(s) 198, 209, 459, 611, 703
AsuC2I CCSGG 5 cut(s) 131, 195, 196, 417, 581
AsuHPI GGTGA 4 cut(s) 10, 277, 413, 653
AvaI CYCGRG 1 cut(s) 194
AvaII GGWCC 5 cut(s) 198, 209, 459, 611, 703
BauI CACGAG 3 cut(s) 752, 758, 764
Bbv12I GWGCWC 3 cut(s) 759, 765, 771
BbvI GCAGC 2 cut(s) 413, 489
BccI CCATC 2 cut(s) 299, 678
BceAI ACGGC 5 cut(s) 323, 375, 490, 520, 622
BciT130I CCWGG 2 cut(s) 451, 586
BclI TGATCA 1 cut(s) 94
BcnI CCSGG 5 cut(s) 131, 195, 196, 417, 581
BcoDI GTCTC 2 cut(s) 184, 224
BfaI CTAG 1 cut(s) 615
BglI GCCNNNNNGGC 1 cut(s) 372
BisI GCNGC 7 cut(s) 376, 427, 430, 442, 478, 562, 676
BlsI GCNGC 7 cut(s) 377, 428, 431, 443, 479, 563, 677
Bme1390I CCNGG 7 cut(s) 131, 195, 196, 417, 451, 581, 586
Bme18I GGWCC 5 cut(s) 198, 209, 459, 611, 703
BmeT110I CYCGRG 1 cut(s) 194
BmgT120I GGNCC 5 cut(s) 198, 209, 459, 611, 703
BmiI GGNNCC 3 cut(s) 199, 211, 461
BmrFI CCNGG 7 cut(s) 131, 195, 196, 417, 451, 581, 586
BmsI GCATC 2 cut(s) 130, 310
BoxI GACNNNNGTC 1 cut(s) 196
BpuMI CCSGG 5 cut(s) 131, 195, 196, 417, 581
BsaI GGTCTC 2 cut(s) 184, 224
BsaWI WCCGGW 2 cut(s) 206, 271
Bsc4I CCNNNNNNNGG 3 cut(s) 456, 560, 580
BseAI TCCGGA 2 cut(s) 206, 271
BseBI CCWGG 2 cut(s) 451, 586
BseLI CCNNNNNNNGG 3 cut(s) 456, 560, 580
BsePI GCGCGC 1 cut(s) 569
BseRI GAGGAG 4 cut(s) 242, 269, 272, 320
BseX3I CGGCCG 1 cut(s) 373
BseXI GCAGC 2 cut(s) 413, 489
Bsh1236I CGCG 4 cut(s) 466, 486, 561, 571
Bsh1285I CGRYCG 3 cut(s) 376, 439, 550
BshFI GGCC 6 cut(s) 239, 338, 375, 432, 584, 658
BsiEI CGRYCG 3 cut(s) 376, 439, 550
BsiHKAI GWGCWC 3 cut(s) 759, 765, 771
BsiHKCI CYCGRG 1 cut(s) 194
BsiSI CCGG 7 cut(s) 131, 195, 207, 272, 416, 528, 581
BslI CCNNNNNNNGG 3 cut(s) 456, 560, 580
BsmAI GTCTC 2 cut(s) 184, 224
BsnI GGCC 6 cut(s) 239, 338, 375, 432, 584, 658
Bso31I GGTCTC 2 cut(s) 184, 224
BsoBI CYCGRG 1 cut(s) 194
Bsp1286I GDGCHC 3 cut(s) 759, 765, 771
Bsp13I TCCGGA 2 cut(s) 206, 271
Bsp143I GATC 6 cut(s) 94, 126, 516, 547, 576, 691
Bsp19I CCATGG 1 cut(s) 21
BspANI GGCC 6 cut(s) 239, 338, 375, 432, 584, 658
BspEI TCCGGA 2 cut(s) 206, 271
BspFNI CGCG 4 cut(s) 466, 486, 561, 571
BspHI TCATGA 1 cut(s) 79
BspLI GGNNCC 3 cut(s) 199, 211, 461
BspPI GGATC 2 cut(s) 121, 571
BspTNI GGTCTC 2 cut(s) 184, 224
BssHII GCGCGC 1 cut(s) 569
BssMI GATC 6 cut(s) 94, 126, 516, 547, 576, 691
BssSI CACGAG 3 cut(s) 752, 758, 764
BssT1I CCWWGG 1 cut(s) 21
Bst2BI CACGAG 3 cut(s) 752, 758, 764
Bst2UI CCWGG 2 cut(s) 451, 586
Bst4CI ACNGT 3 cut(s) 150, 352, 437
BstC8I GCNNGC 3 cut(s) 446, 482, 571
BstDSI CCRYGG 5 cut(s) 21, 433, 472, 559, 604
BstEII GGTNACC 2 cut(s) 133, 419
BstFNI CGCG 4 cut(s) 466, 486, 561, 571
BstHHI GCGC 4 cut(s) 468, 486, 571, 573
BstKTI GATC 6 cut(s) 97, 129, 519, 550, 579, 694
BstMAI GTCTC 2 cut(s) 184, 224
BstMBI GATC 6 cut(s) 94, 126, 516, 547, 576, 691
BstMCI CGRYCG 3 cut(s) 376, 439, 550
BstMWI GCNNNNNNNGC 6 cut(s) 372, 438, 474, 483, 570, 672
BstNI CCWGG 2 cut(s) 451, 586
BstPAI GACNNNNGTC 1 cut(s) 196
BstPI GGTNACC 2 cut(s) 133, 419
BstSCI CCNGG 7 cut(s) 129, 193, 194, 415, 449, 579, 584
BstUI CGCG 4 cut(s) 466, 486, 561, 571
BstV1I GCAGC 2 cut(s) 413, 489
BstX2I RGATCY 2 cut(s) 126, 576
BstYI RGATCY 2 cut(s) 126, 576
BstZI CGGCCG 1 cut(s) 373
BsuRI GGCC 6 cut(s) 239, 338, 375, 432, 584, 658
BtgI CCRYGG 5 cut(s) 21, 433, 472, 559, 604
BtgZI GCGATG 1 cut(s) 656
Cac8I GCNNGC 3 cut(s) 446, 482, 571
CciI TCATGA 1 cut(s) 79
CfoI GCGC 4 cut(s) 468, 486, 571, 573
Cfr13I GGNCC 5 cut(s) 198, 209, 459, 611, 703
Cfr42I CCGCGG 1 cut(s) 562
Cfr9I CCCGGG 1 cut(s) 194
CseI GACGC 1 cut(s) 312
CviAII CATG 6 cut(s) 6, 22, 80, 514, 643, 746
DpnI GATC 6 cut(s) 96, 128, 518, 549, 578, 693
DpnII GATC 6 cut(s) 94, 126, 516, 547, 576, 691
EaeI YGGCCR 3 cut(s) 373, 430, 582
EagI CGGCCG 1 cut(s) 373
EciI GGCGGA 4 cut(s) 353, 579, 590, 624
EclXI CGGCCG 1 cut(s) 373
Eco130I CCWWGG 1 cut(s) 21
Eco147I AGGCCT 2 cut(s) 239, 658
Eco31I GGTCTC 2 cut(s) 184, 224
Eco47I GGWCC 5 cut(s) 198, 209, 459, 611, 703
Eco52I CGGCCG 1 cut(s) 373
Eco88I CYCGRG 1 cut(s) 194
Eco91I GGTNACC 2 cut(s) 133, 419
EcoO65I GGTNACC 2 cut(s) 133, 419
EcoRII CCWGG 2 cut(s) 449, 584
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 6 cut(s) 9, 25, 83, 517, 646, 749
FatI CATG 6 cut(s) 5, 21, 79, 513, 642, 745
FauI CCCGC 2 cut(s) 395, 471
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 7 cut(s) 376, 427, 430, 442, 478, 562, 676
Fsp4HI GCNGC 7 cut(s) 376, 427, 430, 442, 478, 562, 676
FspBI CTAG 1 cut(s) 615
GlaI GCGC 4 cut(s) 467, 485, 570, 572
GluI GCNGC 7 cut(s) 376, 427, 430, 442, 478, 562, 676
HaeIII GGCC 6 cut(s) 239, 338, 375, 432, 584, 658
HapII CCGG 7 cut(s) 131, 195, 207, 272, 416, 528, 581
HgaI GACGC 1 cut(s) 312
HhaI GCGC 4 cut(s) 468, 486, 571, 573
Hin1II CATG 6 cut(s) 9, 25, 83, 517, 646, 749
Hin6I GCGC 4 cut(s) 466, 484, 569, 571
HinP1I GCGC 4 cut(s) 466, 484, 569, 571
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 6 cut(s) 10, 15, 203, 296, 618, 647
HpaII CCGG 7 cut(s) 131, 195, 207, 272, 416, 528, 581
HphI GGTGA 4 cut(s) 10, 277, 413, 653
Hpy166II GTNNAC 4 cut(s) 179, 285, 348, 459
Hpy188I TCNGA 3 cut(s) 202, 334, 652
Hpy188III TCNNGA 5 cut(s) 80, 207, 272, 695, 805
Hpy8I GTNNAC 4 cut(s) 179, 285, 348, 459
Hpy99I CGWCG 6 cut(s) 251, 328, 374, 512, 536, 638
HpyAV CCTTC 2 cut(s) 250, 484
HpyCH4III ACNGT 3 cut(s) 150, 352, 437
HpyCH4IV ACGT 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 6 cut(s) 372, 438, 474, 483, 570, 672
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 6 cut(s) 9, 25, 83, 517, 646, 749
HspAI GCGC 4 cut(s) 466, 484, 569, 571
Kpn2I TCCGGA 2 cut(s) 206, 271
Ksp22I TGATCA 1 cut(s) 94
KspI CCGCGG 1 cut(s) 562
Kzo9I GATC 6 cut(s) 94, 126, 516, 547, 576, 691
LmnI GCTCC 2 cut(s) 566, 736
Lsp1109I GCAGC 2 cut(s) 413, 489
LweI GCATC 2 cut(s) 130, 310
MaeI CTAG 1 cut(s) 615
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 4 cut(s) 16, 27, 133, 419
MalI GATC 6 cut(s) 96, 128, 518, 549, 578, 693
MboI GATC 6 cut(s) 94, 126, 516, 547, 576, 691
MboII GAAGA 2 cut(s) 274, 736
MflI RGATCY 2 cut(s) 126, 576
MhlI GDGCHC 3 cut(s) 759, 765, 771
MluCI AATT 1 cut(s) 221
MlyI GAGTC 1 cut(s) 24
MroI TCCGGA 2 cut(s) 206, 271
MseI TTAA 2 cut(s) 66, 153
MslI CAYNNNNRTG 3 cut(s) 636, 744, 774
MspA1I CMGCKG 2 cut(s) 426, 561
MspI CCGG 7 cut(s) 131, 195, 207, 272, 416, 528, 581
MspR9I CCNGG 7 cut(s) 131, 195, 196, 417, 451, 581, 586
MvaI CCWGG 2 cut(s) 451, 586
MvnI CGCG 4 cut(s) 466, 486, 561, 571
MwoI GCNNNNNNNGC 6 cut(s) 372, 438, 474, 483, 570, 672
NciI CCSGG 5 cut(s) 131, 195, 196, 417, 581
NcoI CCATGG 1 cut(s) 21
NdeII GATC 6 cut(s) 94, 126, 516, 547, 576, 691
NlaIII CATG 6 cut(s) 9, 25, 83, 517, 646, 749
NlaIV GGNNCC 3 cut(s) 199, 211, 461
NmeAIII GCCGAG 2 cut(s) 277, 304
NmuCI GTSAC 2 cut(s) 16, 419
OliI CACNNNNGTG 1 cut(s) 774
PagI TCATGA 1 cut(s) 79
PauI GCGCGC 1 cut(s) 569
PceI AGGCCT 2 cut(s) 239, 658
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PfeI GAWTC 5 cut(s) 10, 203, 296, 618, 647
PflMI CCANNNNNTGG 1 cut(s) 456
PkrI GCNGC 7 cut(s) 377, 428, 431, 443, 479, 563, 677
Ple19I CGATCG 1 cut(s) 550
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
PshAI GACNNNNGTC 1 cut(s) 196
Psp6I CCWGG 2 cut(s) 449, 584
PspEI GGTNACC 2 cut(s) 133, 419
PspGI CCWGG 2 cut(s) 449, 584
PspN4I GGNNCC 3 cut(s) 199, 211, 461
PspPI GGNCC 5 cut(s) 198, 209, 459, 611, 703
PsuI RGATCY 2 cut(s) 126, 576
PteI GCGCGC 1 cut(s) 569
PvuI CGATCG 1 cut(s) 550
RseI CAYNNNNRTG 3 cut(s) 636, 744, 774
SacII CCGCGG 1 cut(s) 562
SaqAI TTAA 2 cut(s) 66, 153
SatI GCNGC 7 cut(s) 376, 427, 430, 442, 478, 562, 676
Sau3AI GATC 6 cut(s) 94, 126, 516, 547, 576, 691
Sau96I GGNCC 5 cut(s) 198, 209, 459, 611, 703
SchI GAGTC 1 cut(s) 24
ScrFI CCNGG 7 cut(s) 131, 195, 196, 417, 451, 581, 586
SduI GDGCHC 3 cut(s) 759, 765, 771
SetI ASST 6 cut(s) 178, 270, 362, 590, 616, 720
SfaNI GCATC 2 cut(s) 130, 310
Sfr303I CCGCGG 1 cut(s) 562
SgrBI CCGCGG 1 cut(s) 562
SinI GGWCC 5 cut(s) 198, 209, 459, 611, 703
SmaI CCCGGG 1 cut(s) 196
SmiMI CAYNNNNRTG 3 cut(s) 636, 744, 774
Sse9I AATT 1 cut(s) 221
SseBI AGGCCT 2 cut(s) 239, 658
SspMI CTAG 1 cut(s) 615
StuI AGGCCT 2 cut(s) 239, 658
StyD4I CCNGG 7 cut(s) 129, 193, 194, 415, 449, 579, 584
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 3 cut(s) 150, 352, 437
TaiI ACGT 1 cut(s) 178
TaqI TCGA 5 cut(s) 13, 294, 299, 326, 546
TaqII GACCGA 1 cut(s) 248
TasI AATT 1 cut(s) 221
TauI GCSGC 5 cut(s) 378, 432, 444, 564, 678
TfiI GAWTC 5 cut(s) 10, 203, 296, 618, 647
Tru1I TTAA 2 cut(s) 66, 153
Tru9I TTAA 2 cut(s) 66, 153
TseFI GTSAC 2 cut(s) 16, 419
TseI GCWGC 2 cut(s) 426, 477
Tsp45I GTSAC 2 cut(s) 16, 419
TspDTI ATGAA 2 cut(s) 554, 762
TspGWI ACGGA 4 cut(s) 333, 384, 401, 543
TspMI CCCGGG 1 cut(s) 194
Van91I CCANNNNNTGG 1 cut(s) 456
VpaK11BI GGWCC 5 cut(s) 198, 209, 459, 611, 703
XmaI CCCGGG 1 cut(s) 194
XspI CTAG 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.