pycom06g09950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0017661
Physical Location & Seq
Forward (+)
15277165 .. 15277947
783 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g09950.1

Sequence Viewer

Length: 783 bp
ATGGCCAAGCTCCTCCTCACCGTCGCCGCTCTCTTCTTTCTCTTCGCCCTCTCCCACGCCCGCACGTCGTCCGACCTACCCGCCAACGAAATCAGCGGCGGCGATCCAGCCGGCGCCAAGTTACCCGAATCCAGGCCCAAGCCCAGACAGCCCGCCACCACCATCCTCTTGCCTAGCGAGAAACCCGTCGACGATCCTGCAACCGTTCCCGAATGGCGCGAGATCGCCACCTCGAAGCTTCCGGAATCTGACGGCGCCACCATCTTAGCCAACGAAGAGTCGACCGAGTTCCAGCACAGCGAAACCGTCCCGTTGACCGTCATAAGTTTCCGCCCCGTCAACCACCACTTCCCCAGGCGCCCCTTCCCGTTGTCTTTCCGTCACGGGCACCGCTGCCGCCACGCCCACCGCCCCCTGCCCCCTCGTTTTCACGGAGGCGAGCGCGAACATCGCGAGGGCGAGGCCGTTTCGTACGGCGACGATATGCTCGTGGCGTCCAGCGACAACATGGGGTTCGATCCAGCGTTTCGAGGCGGAGCGCGCCAGATCCCCGCTAGGTGGGTCAATATCCGCCACGGTGGGCCGAGGTTCCCGTTCAGGCATGATGAAGACATGGAATTGGAGAGGCCTCATCACCATCACCACCGCCGCCACCACCATGAACACGACCACCGCGAAGAATTTGAAGGAACAGAGAAGCAGCCGACAGAGCACAAGCATGATCATGAGCATCATGGGGGCGGTTTGATGAGGAGGGTCCGCAAGTTTTTGAACCACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

29.8

Weight (kDa)

7.0

Isoelectric Point (pI)

58.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017661)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g04430
prunus_persica Prupe.5G117500_v2.0.a1
pyrus_communis pycom06g09950
rosa_laevigata RLG00000004147 RLG00000008498
rosa_multiflora Rmu_sc0000884.1_g000001 Rmu_sc0004584.1_g000008
rosa_roxburghii Rroxscaffold_3G00260800
rosa_rugosa Rorug07G0020600
rosa_samantha Rh7BG148600 Rh7CG152200
rosa_wichuraiana Rw7G012630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 113, 254, 357, 387
AccBSI CCGCTC 1 cut(s) 29
AccI GTMKAC 2 cut(s) 189, 281
AccII CGCG 5 cut(s) 219, 444, 453, 541, 675
AccIII TCCGGA 1 cut(s) 241
AclWI GGATC 4 cut(s) 98, 188, 512, 541
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 680
AcyI GRCGYC 4 cut(s) 114, 255, 358, 494
AfaI GTAC 1 cut(s) 473
AfiI CCNNNNNNNGG 2 cut(s) 132, 558
AgsI TTSAA 2 cut(s) 686, 772
AjiI CACGTC 1 cut(s) 66
AjnI CCWGG 2 cut(s) 131, 353
AluBI AGCT 2 cut(s) 10, 238
AluI AGCT 2 cut(s) 10, 238
Alw21I GWGCWC 1 cut(s) 714
AlwI GGATC 4 cut(s) 98, 188, 512, 541
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 5 cut(s) 3, 134, 462, 581, 626
ApeKI GCWGC 2 cut(s) 393, 700
ApoI RAATTY 1 cut(s) 680
AspLEI GCGC 7 cut(s) 116, 219, 257, 360, 444, 541, 543
AspS9I GGNCC 3 cut(s) 135, 581, 757
AsuHPI GGTGA 3 cut(s) 10, 626, 632
AvaII GGWCC 1 cut(s) 757
BaeGI GKGCMC 1 cut(s) 390
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 4 cut(s) 113, 254, 357, 387
BauI CACGAG 1 cut(s) 488
BbsI GAAGAC 1 cut(s) 615
Bbv12I GWGCWC 1 cut(s) 714
BbvI GCAGC 2 cut(s) 380, 712
BccI CCATC 3 cut(s) 170, 269, 645
BceAI ACGGC 3 cut(s) 268, 449, 490
BcgI CGANNNNNNTGC 2 cut(s) 179, 213
BciT130I CCWGG 2 cut(s) 133, 355
BclI TGATCA 1 cut(s) 721
BfaI CTAG 2 cut(s) 174, 555
BfoI RGCGCY 3 cut(s) 117, 258, 361
BisI GCNGC 7 cut(s) 27, 97, 100, 394, 397, 649, 701
BlsI GCNGC 7 cut(s) 28, 98, 101, 395, 398, 650, 702
Bme1390I CCNGG 2 cut(s) 133, 355
Bme18I GGWCC 1 cut(s) 757
BmgBI CACGTC 1 cut(s) 66
BmgT120I GGNCC 3 cut(s) 135, 581, 757
BmiI GGNNCC 6 cut(s) 115, 256, 359, 389, 590, 758
BmrFI CCNGG 2 cut(s) 133, 355
BmsI GCATC 1 cut(s) 739
BpiI GAAGAC 1 cut(s) 615
BsaHI GRCGYC 4 cut(s) 114, 255, 358, 494
BsaJI CCNNGG 3 cut(s) 353, 574, 584
BsaWI WCCGGW 1 cut(s) 241
Bsc4I CCNNNNNNNGG 2 cut(s) 132, 558
Bse118I RCCGGY 1 cut(s) 110
BseAI TCCGGA 1 cut(s) 241
BseBI CCWGG 2 cut(s) 133, 355
BseDI CCNNGG 3 cut(s) 353, 574, 584
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 132, 558
BsePI GCGCGC 1 cut(s) 539
BseRI GAGGAG 2 cut(s) 5, 766
BseSI GKGCMC 1 cut(s) 390
BseXI GCAGC 2 cut(s) 380, 712
Bsh1236I CGCG 5 cut(s) 219, 444, 453, 541, 675
Bsh1285I CGRYCG 1 cut(s) 285
BshFI GGCC 5 cut(s) 5, 136, 464, 583, 628
BshNI GGYRCC 4 cut(s) 113, 254, 357, 387
BsiEI CGRYCG 1 cut(s) 285
BsiHKAI GWGCWC 1 cut(s) 714
BsiSI CCGG 2 cut(s) 111, 242
BsiWI CGTACG 1 cut(s) 471
BslFI GGGAC 1 cut(s) 293
BslI CCNNNNNNNGG 2 cut(s) 132, 558
BsmFI GGGAC 1 cut(s) 293
BsnI GGCC 5 cut(s) 5, 136, 464, 583, 628
Bsp1286I GDGCHC 2 cut(s) 390, 714
Bsp13I TCCGGA 1 cut(s) 241
Bsp143I GATC 6 cut(s) 103, 193, 222, 517, 546, 721
Bsp68I TCGCGA 1 cut(s) 453
BspANI GGCC 5 cut(s) 5, 136, 464, 583, 628
BspEI TCCGGA 1 cut(s) 241
BspFNI CGCG 5 cut(s) 219, 444, 453, 541, 675
BspHI TCATGA 1 cut(s) 724
BspLI GGNNCC 6 cut(s) 115, 256, 359, 389, 590, 758
BspPI GGATC 4 cut(s) 98, 188, 512, 541
BspT107I GGYRCC 4 cut(s) 113, 254, 357, 387
BsrBI CCGCTC 1 cut(s) 29
BsrFI RCCGGY 1 cut(s) 110
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 3 cut(s) 353, 574, 584
BssHII GCGCGC 1 cut(s) 539
BssMI GATC 6 cut(s) 103, 193, 222, 517, 546, 721
BssNI GRCGYC 4 cut(s) 114, 255, 358, 494
BssSI CACGAG 1 cut(s) 488
Bst2BI CACGAG 1 cut(s) 488
Bst2UI CCWGG 2 cut(s) 133, 355
Bst4CI ACNGT 5 cut(s) 22, 205, 307, 319, 578
Bst6I CTCTTC 3 cut(s) 38, 47, 270
BstACI GRCGYC 4 cut(s) 114, 255, 358, 494
BstC8I GCNNGC 5 cut(s) 61, 112, 153, 440, 541
BstDEI CTNAG 1 cut(s) 265
BstDSI CCRYGG 1 cut(s) 574
BstF5I GGATG 1 cut(s) 162
BstFNI CGCG 5 cut(s) 219, 444, 453, 541, 675
BstH2I RGCGCY 3 cut(s) 117, 258, 361
BstHHI GCGC 7 cut(s) 116, 219, 257, 360, 444, 541, 543
BstKTI GATC 6 cut(s) 106, 196, 225, 520, 549, 724
BstMBI GATC 6 cut(s) 103, 193, 222, 517, 546, 721
BstMCI CGRYCG 1 cut(s) 285
BstMWI GCNNNNNNNGC 4 cut(s) 148, 450, 540, 709
BstNI CCWGG 2 cut(s) 133, 355
BstSCI CCNGG 2 cut(s) 131, 353
BstSLI GKGCMC 1 cut(s) 390
BstUI CGCG 5 cut(s) 219, 444, 453, 541, 675
BstV1I GCAGC 2 cut(s) 380, 712
BstV2I GAAGAC 1 cut(s) 615
BstX2I RGATCY 1 cut(s) 546
BstYI RGATCY 1 cut(s) 546
BsuRI GGCC 5 cut(s) 5, 136, 464, 583, 628
BtgI CCRYGG 1 cut(s) 574
BtgZI GCGATG 1 cut(s) 434
BtrI CACGTC 1 cut(s) 66
BtsCI GGATG 1 cut(s) 162
BtuMI TCGCGA 1 cut(s) 453
Cac8I GCNNGC 5 cut(s) 61, 112, 153, 440, 541
CciI TCATGA 1 cut(s) 724
CfoI GCGC 7 cut(s) 116, 219, 257, 360, 444, 541, 543
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 3 cut(s) 135, 581, 757
CseI GACGC 1 cut(s) 483
Csp6I GTAC 1 cut(s) 472
CviAII CATG 7 cut(s) 508, 602, 613, 659, 719, 725, 734
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 1 cut(s) 265
DinI GGCGCC 3 cut(s) 115, 256, 359
DpnI GATC 6 cut(s) 105, 195, 224, 519, 548, 723
DpnII GATC 6 cut(s) 103, 193, 222, 517, 546, 721
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 38, 47, 270
EarI CTCTTC 3 cut(s) 38, 47, 270
EciI GGCGGA 3 cut(s) 320, 549, 560
Eco147I AGGCCT 1 cut(s) 628
Eco47I GGWCC 1 cut(s) 757
EcoRII CCWGG 2 cut(s) 131, 353
EgeI GGCGCC 3 cut(s) 115, 256, 359
EheI GGCGCC 3 cut(s) 115, 256, 359
FaeI CATG 7 cut(s) 511, 605, 616, 662, 722, 728, 737
FaiI YATR 9 cut(s) 323, 485, 509, 603, 614, 660, 720, 726, 735
FaqI GGGAC 1 cut(s) 293
FatI CATG 7 cut(s) 507, 601, 612, 658, 718, 724, 733
FauI CCCGC 4 cut(s) 68, 88, 160, 559
FbaI TGATCA 1 cut(s) 721
FblI GTMKAC 2 cut(s) 189, 281
Fnu4HI GCNGC 7 cut(s) 27, 97, 100, 394, 397, 649, 701
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 7 cut(s) 27, 97, 100, 394, 397, 649, 701
FspBI CTAG 2 cut(s) 174, 555
GlaI GCGC 7 cut(s) 115, 218, 256, 359, 443, 540, 542
GluI GCNGC 7 cut(s) 27, 97, 100, 394, 397, 649, 701
HaeII RGCGCY 3 cut(s) 117, 258, 361
HaeIII GGCC 5 cut(s) 5, 136, 464, 583, 628
HapII CCGG 2 cut(s) 111, 242
HgaI GACGC 1 cut(s) 483
HhaI GCGC 7 cut(s) 116, 219, 257, 360, 444, 541, 543
Hin1I GRCGYC 4 cut(s) 114, 255, 358, 494
Hin1II CATG 7 cut(s) 511, 605, 616, 662, 722, 728, 737
Hin6I GCGC 7 cut(s) 114, 217, 255, 358, 442, 539, 541
HinP1I GCGC 7 cut(s) 114, 217, 255, 358, 442, 539, 541
HincII GTYRAC 4 cut(s) 190, 282, 315, 340
HindII GTYRAC 4 cut(s) 190, 282, 315, 340
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 3 cut(s) 128, 245, 278
HpaII CCGG 2 cut(s) 111, 242
HphI GGTGA 3 cut(s) 10, 626, 632
Hpy166II GTNNAC 4 cut(s) 190, 282, 315, 340
Hpy188I TCNGA 2 cut(s) 73, 250
Hpy188III TCNNGA 4 cut(s) 209, 242, 452, 725
Hpy8I GTNNAC 4 cut(s) 190, 282, 315, 340
Hpy99I CGWCG 5 cut(s) 26, 70, 191, 194, 482
HpyAV CCTTC 2 cut(s) 373, 680
HpyCH4III ACNGT 5 cut(s) 22, 205, 307, 319, 578
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 1 cut(s) 200
HpyF10VI GCNNNNNNNGC 4 cut(s) 148, 450, 540, 709
HpyF3I CTNAG 1 cut(s) 265
HpySE526I ACGT 1 cut(s) 65
Hsp92I GRCGYC 4 cut(s) 114, 255, 358, 494
Hsp92II CATG 7 cut(s) 511, 605, 616, 662, 722, 728, 737
HspAI GCGC 7 cut(s) 114, 217, 255, 358, 442, 539, 541
KasI GGCGCC 3 cut(s) 113, 254, 357
Kpn2I TCCGGA 1 cut(s) 241
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 721
Kzo9I GATC 6 cut(s) 103, 193, 222, 517, 546, 721
LmnI GCTCC 2 cut(s) 15, 536
Lsp1109I GCAGC 2 cut(s) 380, 712
LweI GCATC 1 cut(s) 739
MaeI CTAG 2 cut(s) 174, 555
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 2 cut(s) 120, 380
MalI GATC 6 cut(s) 105, 195, 224, 519, 548, 723
MbiI CCGCTC 1 cut(s) 29
MboI GATC 6 cut(s) 103, 193, 222, 517, 546, 721
MboII GAAGA 5 cut(s) 25, 34, 287, 620, 689
MflI RGATCY 1 cut(s) 546
MhlI GDGCHC 2 cut(s) 390, 714
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 617, 680
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 3 cut(s) 114, 255, 358
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 1 cut(s) 96
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 241
MroNI GCCGGC 1 cut(s) 110
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 3 cut(s) 657, 717, 723
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 96, 393
MspI CCGG 2 cut(s) 111, 242
MspR9I CCNGG 2 cut(s) 133, 355
MvaI CCWGG 2 cut(s) 133, 355
MvnI CGCG 5 cut(s) 219, 444, 453, 541, 675
MwoI GCNNNNNNNGC 4 cut(s) 148, 450, 540, 709
NaeI GCCGGC 1 cut(s) 112
NarI GGCGCC 3 cut(s) 114, 255, 358
NdeII GATC 6 cut(s) 103, 193, 222, 517, 546, 721
NgoMIV GCCGGC 1 cut(s) 110
NlaIII CATG 7 cut(s) 511, 605, 616, 662, 722, 728, 737
NlaIV GGNNCC 6 cut(s) 115, 256, 359, 389, 590, 758
NmeAIII GCCGAG 1 cut(s) 609
NmuCI GTSAC 1 cut(s) 380
NruI TCGCGA 1 cut(s) 453
PagI TCATGA 1 cut(s) 724
PauI GCGCGC 1 cut(s) 539
PceI AGGCCT 1 cut(s) 628
PcsI WCGNNNNNNNCGW 2 cut(s) 486, 672
PdiI GCCGGC 1 cut(s) 112
PfeI GAWTC 2 cut(s) 128, 245
Pfl23II CGTACG 1 cut(s) 471
PkrI GCNGC 7 cut(s) 28, 98, 101, 395, 398, 650, 702
PleI GAGTC 1 cut(s) 286
PluTI GGCGCC 3 cut(s) 117, 258, 361
PpsI GAGTC 1 cut(s) 286
Psp6I CCWGG 2 cut(s) 131, 353
PspGI CCWGG 2 cut(s) 131, 353
PspLI CGTACG 1 cut(s) 471
PspN4I GGNNCC 6 cut(s) 115, 256, 359, 389, 590, 758
PspPI GGNCC 3 cut(s) 135, 581, 757
PsuI RGATCY 1 cut(s) 546
PteI GCGCGC 1 cut(s) 539
RruI TCGCGA 1 cut(s) 453
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
RseI CAYNNNNRTG 3 cut(s) 657, 717, 723
SalI GTCGAC 2 cut(s) 188, 280
SatI GCNGC 7 cut(s) 27, 97, 100, 394, 397, 649, 701
Sau3AI GATC 6 cut(s) 103, 193, 222, 517, 546, 721
Sau96I GGNCC 3 cut(s) 135, 581, 757
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 2 cut(s) 133, 355
SduI GDGCHC 2 cut(s) 390, 714
SetI ASST 7 cut(s) 12, 68, 78, 233, 240, 560, 590
SfaNI GCATC 1 cut(s) 739
SfoI GGCGCC 3 cut(s) 115, 256, 359
SgrDI CGTCGACG 1 cut(s) 188
SinI GGWCC 1 cut(s) 757
SmiMI CAYNNNNRTG 3 cut(s) 657, 717, 723
Sse9I AATT 2 cut(s) 617, 680
SseBI AGGCCT 1 cut(s) 628
SspDI GGCGCC 3 cut(s) 113, 254, 357
SspMI CTAG 2 cut(s) 174, 555
StuI AGGCCT 1 cut(s) 628
StyD4I CCNGG 2 cut(s) 131, 353
TaaI ACNGT 5 cut(s) 22, 205, 307, 319, 578
TaiI ACGT 1 cut(s) 68
TaqI TCGA 5 cut(s) 189, 233, 281, 516, 529
TaqII GACCGA 1 cut(s) 299
TasI AATT 2 cut(s) 617, 680
TauI GCSGC 5 cut(s) 29, 99, 102, 399, 651
TfiI GAWTC 2 cut(s) 128, 245
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 2 cut(s) 393, 700
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 2 cut(s) 621, 675
TspGWI ACGGA 2 cut(s) 368, 447
VpaK11BI GGWCC 1 cut(s) 757
XapI RAATTY 1 cut(s) 680
XcmI CCANNNNNNNNNTGG 1 cut(s) 505
XmiI GTMKAC 2 cut(s) 189, 281
XspI CTAG 2 cut(s) 174, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.