RLG00000008498

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0017661
Physical Location & Seq
Forward (+)
31334988 .. 31335739
752 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008498

Sequence Viewer

Length: 699 bp
ATGGCCAAGCTCATCTTCACCGCCGCCGCCCTCTTCCTCCTCTTCGCCTTCTCCCATGGTCGTGCGCCGTCCGATCTCCCCAACGGCCGTGATGATGCAGCAGACAACATGATCCCGGTAACCGATTCTGAACCGTTTAAGGCTACCACCAAGACTCTCCGTTTACCAAGCGAGAGACCAGGATCCGAATCCGGACCCGTTGTGGAATTGGAGGAGACCGAGACCGCCGAGGAGGAGAAGAAGCTTCCGGAAGCCGAGTTCGCCACCATCGAATCGAACGAGGAGAACACCGCCGATGCGTCGAAATCCGAGGCCGTTCCGTTGACCATCAGCTTCCGCCCCTCGCCGCCAGCCCAAGCGGTGGACCCCGCGCTTCCACGGCAGCGAGCGCGAGAAGCACACTCCCTACGGCGACGACATGATCTTGTCCTCCGGCACGAGATGAAGTTCGATCGTCCGTTCCGCGGCGGAGCGCGCCAGATCCCGGCCAGGTGGTTCAACTTCCACCACGGCGGACCTAGATTCCCTTACAAACACGACGATGACATGGAATCCGAGAGGCCTCACCACCACCACCACCACGATCACGACTTGGACCAAGAAAATGAGGTAGAGGAGAACCACAGGGAGCATAAACATGACCACGAGCACAGGGGTGGTTTGTTCAGGGGCTTCTGCAAGTTCTTGAACCGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

26.66

Weight (kDa)

6.01

Isoelectric Point (pI)

57.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017661)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g04430
prunus_persica Prupe.5G117500_v2.0.a1
pyrus_communis pycom06g09950
rosa_laevigata RLG00000004147 RLG00000008498
rosa_multiflora Rmu_sc0000884.1_g000001 Rmu_sc0004584.1_g000008
rosa_roxburghii Rroxscaffold_3G00260800
rosa_rugosa Rorug07G0020600
rosa_samantha Rh7BG148600 Rh7CG152200
rosa_wichuraiana Rw7G012630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 361
AccII CGCG 4 cut(s) 371, 391, 465, 475
AccIII TCCGGA 2 cut(s) 191, 247
AclWI GGATC 4 cut(s) 106, 177, 190, 475
AcoI YGGCCR 3 cut(s) 3, 85, 486
AfiI CCNNNNNNNGG 3 cut(s) 361, 464, 484
AgsI TTSAA 2 cut(s) 499, 688
AjnI CCWGG 2 cut(s) 178, 488
AjuI GAANNNNNNNTTGG 1 cut(s) 31
AleI CACNNNNGTG 1 cut(s) 654
AloI GAACNNNNNNTCC 2 cut(s) 242, 274
AluBI AGCT 3 cut(s) 10, 244, 333
AluI AGCT 3 cut(s) 10, 244, 333
Alw21I GWGCWC 1 cut(s) 651
Alw26I GTCTC 3 cut(s) 169, 209, 215
AlwI GGATC 4 cut(s) 106, 177, 190, 475
Aor13HI TCCGGA 2 cut(s) 191, 247
AoxI GGCC 5 cut(s) 3, 85, 312, 486, 560
ApeKI GCWGC 2 cut(s) 98, 382
AspLEI GCGC 5 cut(s) 67, 373, 391, 475, 477
AspS9I GGNCC 4 cut(s) 194, 364, 515, 595
AsuC2I CCSGG 2 cut(s) 116, 485
AsuHPI GGTGA 2 cut(s) 10, 557
AvaII GGWCC 4 cut(s) 194, 364, 515, 595
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 182
BauI CACGAG 2 cut(s) 437, 644
Bbv12I GWGCWC 1 cut(s) 651
BbvI GCAGC 2 cut(s) 110, 394
BccI CCATC 2 cut(s) 275, 335
BceAI ACGGC 7 cut(s) 52, 72, 100, 299, 395, 425, 526
BciT130I CCWGG 2 cut(s) 180, 490
BcnI CCSGG 2 cut(s) 116, 485
BcoDI GTCTC 3 cut(s) 169, 209, 215
BfaI CTAG 1 cut(s) 519
BisI GCNGC 6 cut(s) 24, 27, 99, 347, 383, 466
BlsI GCNGC 6 cut(s) 25, 28, 100, 348, 384, 467
Bme1390I CCNGG 4 cut(s) 116, 180, 485, 490
Bme18I GGWCC 4 cut(s) 194, 364, 515, 595
BmgT120I GGNCC 4 cut(s) 194, 364, 515, 595
BmiI GGNNCC 3 cut(s) 184, 196, 366
BmrFI CCNGG 4 cut(s) 116, 180, 485, 490
BmsI GCATC 2 cut(s) 85, 286
BpuMI CCSGG 2 cut(s) 116, 485
BsaBI GATNNNNATC 1 cut(s) 187
BsaI GGTCTC 3 cut(s) 169, 209, 215
BsaJI CCNNGG 6 cut(s) 55, 228, 309, 377, 463, 508
BsaWI WCCGGW 2 cut(s) 191, 247
Bsc4I CCNNNNNNNGG 3 cut(s) 361, 464, 484
Bse8I GATNNNNATC 1 cut(s) 187
BseAI TCCGGA 2 cut(s) 191, 247
BseBI CCWGG 2 cut(s) 180, 490
BseDI CCNNGG 6 cut(s) 55, 228, 309, 377, 463, 508
BseJI GATNNNNATC 1 cut(s) 187
BseLI CCNNNNNNNGG 3 cut(s) 361, 464, 484
BsePI GCGCGC 1 cut(s) 473
BseRI GAGGAG 6 cut(s) 29, 227, 245, 248, 296, 629
BseX3I CGGCCG 1 cut(s) 85
BseXI GCAGC 2 cut(s) 110, 394
Bsh1236I CGCG 4 cut(s) 371, 391, 465, 475
Bsh1285I CGRYCG 2 cut(s) 88, 454
BshFI GGCC 5 cut(s) 5, 87, 314, 488, 562
BsiEI CGRYCG 2 cut(s) 88, 454
BsiHKAI GWGCWC 1 cut(s) 651
BsiSI CCGG 5 cut(s) 116, 192, 248, 433, 485
BslI CCNNNNNNNGG 3 cut(s) 361, 464, 484
BsmAI GTCTC 3 cut(s) 169, 209, 215
BsnI GGCC 5 cut(s) 5, 87, 314, 488, 562
Bso31I GGTCTC 3 cut(s) 169, 209, 215
Bsp1286I GDGCHC 1 cut(s) 651
Bsp13I TCCGGA 2 cut(s) 191, 247
Bsp143I GATC 7 cut(s) 73, 111, 182, 421, 451, 480, 583
Bsp19I CCATGG 1 cut(s) 55
BspANI GGCC 5 cut(s) 5, 87, 314, 488, 562
BspEI TCCGGA 2 cut(s) 191, 247
BspFNI CGCG 4 cut(s) 371, 391, 465, 475
BspLI GGNNCC 3 cut(s) 184, 196, 366
BspPI GGATC 4 cut(s) 106, 177, 190, 475
BspTNI GGTCTC 3 cut(s) 169, 209, 215
BssECI CCNNGG 6 cut(s) 55, 228, 309, 377, 463, 508
BssHII GCGCGC 1 cut(s) 473
BssMI GATC 7 cut(s) 73, 111, 182, 421, 451, 480, 583
BssSI CACGAG 2 cut(s) 437, 644
BssT1I CCWWGG 1 cut(s) 55
Bst2BI CACGAG 2 cut(s) 437, 644
Bst2UI CCWGG 2 cut(s) 180, 490
Bst4CI ACNGT 1 cut(s) 135
Bst6I CTCTTC 2 cut(s) 38, 47
BstC8I GCNNGC 3 cut(s) 351, 387, 475
BstDSI CCRYGG 4 cut(s) 55, 377, 463, 508
BstEII GGTNACC 1 cut(s) 118
BstFNI CGCG 4 cut(s) 371, 391, 465, 475
BstHHI GCGC 5 cut(s) 67, 373, 391, 475, 477
BstKTI GATC 7 cut(s) 76, 114, 185, 424, 454, 483, 586
BstMAI GTCTC 3 cut(s) 169, 209, 215
BstMBI GATC 7 cut(s) 73, 111, 182, 421, 451, 480, 583
BstMCI CGRYCG 2 cut(s) 88, 454
BstMWI GCNNNNNNNGC 5 cut(s) 260, 379, 388, 395, 474
BstNI CCWGG 2 cut(s) 180, 490
BstPI GGTNACC 1 cut(s) 118
BstSCI CCNGG 4 cut(s) 114, 178, 483, 488
BstUI CGCG 4 cut(s) 371, 391, 465, 475
BstV1I GCAGC 2 cut(s) 110, 394
BstX2I RGATCY 2 cut(s) 182, 480
BstYI RGATCY 2 cut(s) 182, 480
BstZI CGGCCG 1 cut(s) 85
BsuRI GGCC 5 cut(s) 5, 87, 314, 488, 562
BtgI CCRYGG 4 cut(s) 55, 377, 463, 508
Cac8I GCNNGC 3 cut(s) 351, 387, 475
CfoI GCGC 5 cut(s) 67, 373, 391, 475, 477
Cfr13I GGNCC 4 cut(s) 194, 364, 515, 595
Cfr42I CCGCGG 1 cut(s) 466
CseI GACGC 1 cut(s) 288
CviAII CATG 5 cut(s) 56, 109, 419, 547, 638
DpnI GATC 7 cut(s) 75, 113, 184, 423, 453, 482, 585
DpnII GATC 7 cut(s) 73, 111, 182, 421, 451, 480, 583
EaeI YGGCCR 3 cut(s) 3, 85, 486
EagI CGGCCG 1 cut(s) 85
Eam1104I CTCTTC 2 cut(s) 38, 47
EarI CTCTTC 2 cut(s) 38, 47
EciI GGCGGA 3 cut(s) 326, 483, 528
EclXI CGGCCG 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 55
Eco147I AGGCCT 1 cut(s) 562
Eco31I GGTCTC 3 cut(s) 169, 209, 215
Eco47I GGWCC 4 cut(s) 194, 364, 515, 595
Eco52I CGGCCG 1 cut(s) 85
Eco91I GGTNACC 1 cut(s) 118
EcoO65I GGTNACC 1 cut(s) 118
EcoRII CCWGG 2 cut(s) 178, 488
EcoT14I CCWWGG 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 55
FaeI CATG 5 cut(s) 59, 112, 422, 550, 641
FaiI YATR 6 cut(s) 57, 110, 420, 548, 633, 639
FalI AAGNNNNNCTT 1 cut(s) 31
FatI CATG 5 cut(s) 55, 108, 418, 546, 637
FauI CCCGC 1 cut(s) 376
Fnu4HI GCNGC 6 cut(s) 24, 27, 99, 347, 383, 466
Fsp4HI GCNGC 6 cut(s) 24, 27, 99, 347, 383, 466
FspBI CTAG 1 cut(s) 519
GlaI GCGC 5 cut(s) 66, 372, 390, 474, 476
GluI GCNGC 6 cut(s) 24, 27, 99, 347, 383, 466
HaeIII GGCC 5 cut(s) 5, 87, 314, 488, 562
HapII CCGG 5 cut(s) 116, 192, 248, 433, 485
HgaI GACGC 1 cut(s) 288
HhaI GCGC 5 cut(s) 67, 373, 391, 475, 477
Hin1II CATG 5 cut(s) 59, 112, 422, 550, 641
Hin6I GCGC 5 cut(s) 65, 371, 389, 473, 475
HinP1I GCGC 5 cut(s) 65, 371, 389, 473, 475
HincII GTYRAC 1 cut(s) 324
HindII GTYRAC 1 cut(s) 324
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 6 cut(s) 125, 154, 188, 272, 522, 551
HpaII CCGG 5 cut(s) 116, 192, 248, 433, 485
HphI GGTGA 2 cut(s) 10, 557
Hpy166II GTNNAC 3 cut(s) 164, 324, 364
Hpy188I TCNGA 5 cut(s) 73, 130, 187, 310, 556
Hpy188III TCNNGA 4 cut(s) 192, 248, 587, 685
Hpy8I GTNNAC 3 cut(s) 164, 324, 364
Hpy99I CGWCG 3 cut(s) 304, 417, 542
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4V TGCA 2 cut(s) 98, 678
HpyF10VI GCNNNNNNNGC 5 cut(s) 260, 379, 388, 395, 474
Hsp92II CATG 5 cut(s) 59, 112, 422, 550, 641
HspAI GCGC 5 cut(s) 65, 371, 389, 473, 475
Kpn2I TCCGGA 2 cut(s) 191, 247
KspI CCGCGG 1 cut(s) 466
Kzo9I GATC 7 cut(s) 73, 111, 182, 421, 451, 480, 583
LmnI GCTCC 2 cut(s) 470, 628
Lsp1109I GCAGC 2 cut(s) 110, 394
LweI GCATC 2 cut(s) 85, 286
MaeI CTAG 1 cut(s) 519
MaeIII GTNAC 1 cut(s) 118
MalI GATC 7 cut(s) 75, 113, 184, 423, 453, 482, 585
MboI GATC 7 cut(s) 73, 111, 182, 421, 451, 480, 583
MboII GAAGA 4 cut(s) 7, 25, 34, 250
MflI RGATCY 2 cut(s) 182, 480
MhlI GDGCHC 1 cut(s) 651
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 206
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 148
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 2 cut(s) 191, 247
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 138
MslI CAYNNNNRTG 4 cut(s) 60, 540, 636, 654
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 465
MspI CCGG 5 cut(s) 116, 192, 248, 433, 485
MspR9I CCNGG 4 cut(s) 116, 180, 485, 490
MvaI CCWGG 2 cut(s) 180, 490
MvnI CGCG 4 cut(s) 371, 391, 465, 475
MwoI GCNNNNNNNGC 5 cut(s) 260, 379, 388, 395, 474
NciI CCSGG 2 cut(s) 116, 485
NcoI CCATGG 1 cut(s) 55
NdeII GATC 7 cut(s) 73, 111, 182, 421, 451, 480, 583
NlaIII CATG 5 cut(s) 59, 112, 422, 550, 641
NlaIV GGNNCC 3 cut(s) 184, 196, 366
NmeAIII GCCGAG 2 cut(s) 253, 280
OliI CACNNNNGTG 1 cut(s) 654
PauI GCGCGC 1 cut(s) 473
PceI AGGCCT 1 cut(s) 562
PcsI WCGNNNNNNNCGW 2 cut(s) 267, 276
PfeI GAWTC 5 cut(s) 125, 188, 272, 522, 551
PflMI CCANNNNNTGG 1 cut(s) 361
PkrI GCNGC 6 cut(s) 25, 28, 100, 348, 384, 467
Ple19I CGATCG 1 cut(s) 454
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
Psp6I CCWGG 2 cut(s) 178, 488
PspEI GGTNACC 1 cut(s) 118
PspGI CCWGG 2 cut(s) 178, 488
PspN4I GGNNCC 3 cut(s) 184, 196, 366
PspPI GGNCC 4 cut(s) 194, 364, 515, 595
PsuI RGATCY 2 cut(s) 182, 480
PteI GCGCGC 1 cut(s) 473
PvuI CGATCG 1 cut(s) 454
RseI CAYNNNNRTG 4 cut(s) 60, 540, 636, 654
SacII CCGCGG 1 cut(s) 466
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 6 cut(s) 24, 27, 99, 347, 383, 466
Sau3AI GATC 7 cut(s) 73, 111, 182, 421, 451, 480, 583
Sau96I GGNCC 4 cut(s) 194, 364, 515, 595
SchI GAGTC 1 cut(s) 148
ScrFI CCNGG 4 cut(s) 116, 180, 485, 490
SduI GDGCHC 1 cut(s) 651
SetI ASST 6 cut(s) 12, 246, 335, 494, 520, 612
SfaNI GCATC 2 cut(s) 85, 286
Sfr303I CCGCGG 1 cut(s) 466
SgrBI CCGCGG 1 cut(s) 466
SinI GGWCC 4 cut(s) 194, 364, 515, 595
SmiMI CAYNNNNRTG 4 cut(s) 60, 540, 636, 654
Sse9I AATT 1 cut(s) 206
SseBI AGGCCT 1 cut(s) 562
SspMI CTAG 1 cut(s) 519
StuI AGGCCT 1 cut(s) 562
StyD4I CCNGG 4 cut(s) 114, 178, 483, 488
StyI CCWWGG 1 cut(s) 55
TaaI ACNGT 1 cut(s) 135
TaqI TCGA 4 cut(s) 270, 275, 302, 450
TaqII GACCGA 1 cut(s) 233
TasI AATT 1 cut(s) 206
TauI GCSGC 4 cut(s) 26, 29, 349, 468
TfiI GAWTC 5 cut(s) 125, 188, 272, 522, 551
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TseI GCWGC 2 cut(s) 98, 382
TspDTI ATGAA 1 cut(s) 458
TspGWI ACGGA 3 cut(s) 149, 309, 447
Van91I CCANNNNNTGG 1 cut(s) 361
VpaK11BI GGWCC 4 cut(s) 194, 364, 515, 595
XspI CTAG 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.