FvH4_5g05110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013665
Physical Location & Seq
Forward (+)
2988518 .. 2990859
2342 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g05110.t1

Sequence Viewer

Length: 792 bp
ATGCCGGGTCCCGGTCCTCACCTGATGTACGCCATGGGTTCGGGTCTAGCTCTCACCACTCTCACCAACGGTAGGTTCAGCCCCCACCACACCCTCATCTACACCATCAACTCCTTCTTCGGCCCCGACATCGGATCCTTCACCGAATGGCTCGCCTCCCTCGTCGGTGGCTTCGGCTCTGACTTCGGCTCCGAGCTCGCTGACGCCATCCACCACCCTTTCTACTACGTCATCATTCTCGGCCTCCCTCTCTCTATTCTCTACTCTTGGATCTCCACATTCTTCCTCCTCAATCGCCTCCTCGATTCCTTTCCTCCGGTGCCCTTATCGAAGTTGCAGTGCATCTTGTTGGTGTCAGCTGGTTCTTTCTCGCACTTTTTCCTAGATCACTTGTTCGAGGAAAATGGGCATTCTGGTACATATAAATGGATTTTGAGCACTGGTTGGTGGGAGGGCCGTGCACCTATTAATCCAGATGCTGTAGTTGTTATTGGCATTTTATGCACGGCCTTAATTGGTGGTTTTATATACATCAACAGAGTTAAGCCTCCCAAGTCTGGTAATAAACAATCATCAATTGAATCCTTGAAACTAATCATCATTATAGCGACCCTGTACTGCTTTTGGTGCGCAAGCCAAATATACTTGATTGATCCTCGTAGGCCAGCAGTTGGTGAAGAAGCTGATCTTGGGGTTCTCGTGTTTCTAGCCACTTATCTCTTTTTCCCTCATTTTTTGTGTATATTGTCCATGCACACAAGAGGTTATGATGGATTGCAGCTTCCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

264

Amino Acids

29.14

Weight (kDa)

6.34

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013665)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g05110 FvH4_5g05110
malus_domestica MD06G1177600.v1.1
prunus_persica Prupe.5G176300_v2.0.a1 Prupe.5G176300_v2.0.a1 Prupe.5G176300_v2.0.a1
pyrus_communis pycom06g15760
rosa_chinensis RchiOBHm_Chr7g0193891
rosa_laevigata RLG00000004236
rosa_multiflora Rmu_sc0002389.1_g000014
rosa_roxburghii Rroxscaffold_3G00261730
rosa_rugosa Rorug07G0012500 Rorug07G0012500
rosa_samantha Rh7AG139400 Rh7BG139900 Rh7CG143600 Rh7DG140800
rosa_wichuraiana Rw7G011890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 631
AccB1I GGYRCC 1 cut(s) 319
AccB7I CCANNNNNTGG 1 cut(s) 671
AclWI GGATC 4 cut(s) 129, 142, 278, 647
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 3 cut(s) 29, 418, 617
AfiI CCNNNNNNNGG 5 cut(s) 11, 72, 131, 557, 671
AgsI TTSAA 2 cut(s) 581, 589
AjuI GAANNNNNNNTTGG 4 cut(s) 59, 91, 672, 704
AluBI AGCT 5 cut(s) 50, 196, 359, 683, 781
AluI AGCT 5 cut(s) 50, 196, 359, 683, 781
Alw21I GWGCWC 3 cut(s) 198, 440, 463
Alw44I GTGCAC 1 cut(s) 459
AlwI GGATC 4 cut(s) 129, 142, 278, 647
AlwNI CAGNNNCTG 1 cut(s) 479
AoxI GGCC 5 cut(s) 121, 241, 454, 507, 662
ApaLI GTGCAC 1 cut(s) 459
ApeKI GCWGC 1 cut(s) 778
AseI ATTAAT 1 cut(s) 468
AspLEI GCGC 1 cut(s) 632
AspS9I GGNCC 4 cut(s) 8, 14, 122, 454
AsuC2I CCSGG 2 cut(s) 6, 12
AsuHPI GGTGA 5 cut(s) 11, 46, 55, 133, 686
AvaII GGWCC 2 cut(s) 8, 14
BaeGI GKGCMC 2 cut(s) 324, 463
BamHI GGATCC 1 cut(s) 134
BanI GGYRCC 1 cut(s) 319
BanII GRGCYC 1 cut(s) 198
BauI CACGAG 1 cut(s) 698
Bbv12I GWGCWC 3 cut(s) 198, 440, 463
BccI CCATC 3 cut(s) 113, 215, 764
BceAI ACGGC 2 cut(s) 441, 522
BcnI CCSGG 2 cut(s) 6, 12
BfaI CTAG 3 cut(s) 47, 383, 707
BfmI CTRYAG 1 cut(s) 480
BisI GCNGC 1 cut(s) 779
BlsI GCNGC 1 cut(s) 780
Bme1390I CCNGG 2 cut(s) 6, 12
Bme18I GGWCC 2 cut(s) 8, 14
BmgT120I GGNCC 4 cut(s) 8, 14, 122, 454
BmiI GGNNCC 6 cut(s) 9, 10, 124, 136, 190, 321
BmrFI CCNGG 2 cut(s) 6, 12
BmsI GCATC 2 cut(s) 351, 466
BpuMI CCSGG 2 cut(s) 6, 12
BsaHI GRCGYC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 33
BsaWI WCCGGW 1 cut(s) 316
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 5 cut(s) 11, 72, 131, 557, 671
Bse1I ACTGG 1 cut(s) 445
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 1 cut(s) 207
BseLI CCNNNNNNNGG 5 cut(s) 11, 72, 131, 557, 671
BseNI ACTGG 1 cut(s) 445
BseRI GAGGAG 2 cut(s) 278, 290
BseSI GKGCMC 2 cut(s) 324, 463
BshFI GGCC 5 cut(s) 123, 243, 456, 509, 664
BshNI GGYRCC 1 cut(s) 319
BsiHKAI GWGCWC 3 cut(s) 198, 440, 463
BsiSI CCGG 3 cut(s) 5, 12, 317
BslI CCNNNNNNNGG 5 cut(s) 11, 72, 131, 557, 671
BsmI GAATGC 1 cut(s) 409
BsnI GGCC 5 cut(s) 123, 243, 456, 509, 664
Bsp1286I GDGCHC 4 cut(s) 198, 324, 440, 463
Bsp143I GATC 5 cut(s) 134, 270, 385, 652, 685
Bsp19I CCATGG 1 cut(s) 33
BspANI GGCC 5 cut(s) 123, 243, 456, 509, 664
BspLI GGNNCC 6 cut(s) 9, 10, 124, 136, 190, 321
BspPI GGATC 4 cut(s) 129, 142, 278, 647
BspT107I GGYRCC 1 cut(s) 319
BsrI ACTGG 1 cut(s) 445
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 5 cut(s) 134, 270, 385, 652, 685
BssNI GRCGYC 1 cut(s) 204
BssSI CACGAG 1 cut(s) 698
BssT1I CCWWGG 1 cut(s) 33
Bst2BI CACGAG 1 cut(s) 698
Bst4CI ACNGT 1 cut(s) 71
BstACI GRCGYC 1 cut(s) 204
BstAPI GCANNNNNTGC 1 cut(s) 501
BstC8I GCNNGC 4 cut(s) 153, 198, 634, 666
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 207
BstHHI GCGC 1 cut(s) 632
BstKTI GATC 5 cut(s) 137, 273, 388, 655, 688
BstMBI GATC 5 cut(s) 134, 270, 385, 652, 685
BstMWI GCNNNNNNNGC 2 cut(s) 501, 627
BstSCI CCNGG 2 cut(s) 4, 10
BstSFI CTRYAG 1 cut(s) 480
BstSLI GKGCMC 2 cut(s) 324, 463
BstX2I RGATCY 2 cut(s) 134, 270
BstYI RGATCY 2 cut(s) 134, 270
BsuRI GGCC 5 cut(s) 123, 243, 456, 509, 664
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 1 cut(s) 207
BtsI GCAGTG 1 cut(s) 344
BtsIMutI CAGTG 2 cut(s) 344, 438
Cac8I GCNNGC 4 cut(s) 153, 198, 634, 666
CaiI CAGNNNCTG 1 cut(s) 479
CfoI GCGC 1 cut(s) 632
Cfr13I GGNCC 4 cut(s) 8, 14, 122, 454
CseI GACGC 1 cut(s) 212
Csp6I GTAC 3 cut(s) 28, 417, 616
CviAII CATG 2 cut(s) 34, 751
CviQI GTAC 3 cut(s) 28, 417, 616
DpnI GATC 5 cut(s) 136, 272, 387, 654, 687
DpnII GATC 5 cut(s) 134, 270, 385, 652, 685
Ecl136II GAGCTC 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 198
Eco47I GGWCC 2 cut(s) 8, 14
Eco53kI GAGCTC 1 cut(s) 196
EcoICRI GAGCTC 1 cut(s) 196
EcoO109I RGGNCCY 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 33
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 2 cut(s) 37, 754
FalI AAGNNNNNCTT 2 cut(s) 672, 704
FatI CATG 2 cut(s) 33, 750
Fnu4HI GCNGC 1 cut(s) 779
FokI GGATG 1 cut(s) 194
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 779
FspBI CTAG 3 cut(s) 47, 383, 707
FspI TGCGCA 1 cut(s) 631
GlaI GCGC 1 cut(s) 631
GluI GCNGC 1 cut(s) 779
HaeIII GGCC 5 cut(s) 123, 243, 456, 509, 664
HapII CCGG 3 cut(s) 5, 12, 317
HgaI GACGC 1 cut(s) 212
HhaI GCGC 1 cut(s) 632
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 2 cut(s) 37, 754
Hin6I GCGC 1 cut(s) 630
HinP1I GCGC 1 cut(s) 630
HinfI GANTC 2 cut(s) 305, 581
HpaII CCGG 3 cut(s) 5, 12, 317
HphI GGTGA 5 cut(s) 11, 46, 55, 133, 686
Hpy166II GTNNAC 1 cut(s) 461
Hpy188I TCNGA 3 cut(s) 134, 181, 193
Hpy188III TCNNGA 1 cut(s) 473
Hpy8I GTNNAC 1 cut(s) 461
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 2 cut(s) 124, 148
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 6 cut(s) 337, 342, 461, 504, 754, 778
HpyF10VI GCNNNNNNNGC 2 cut(s) 501, 627
HpySE526I ACGT 1 cut(s) 228
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 2 cut(s) 37, 754
HspAI GCGC 1 cut(s) 630
KflI GGGWCCC 1 cut(s) 8
Kzo9I GATC 5 cut(s) 134, 270, 385, 652, 685
LmnI GCTCC 1 cut(s) 194
LweI GCATC 2 cut(s) 351, 466
MaeI CTAG 3 cut(s) 47, 383, 707
MaeII ACGT 1 cut(s) 228
MalI GATC 5 cut(s) 136, 272, 387, 654, 687
MboI GATC 5 cut(s) 134, 270, 385, 652, 685
MboII GAAGA 3 cut(s) 109, 274, 689
MfeI CAATTG 1 cut(s) 576
MflI RGATCY 2 cut(s) 134, 270
MhlI GDGCHC 4 cut(s) 198, 324, 440, 463
MluCI AATT 2 cut(s) 513, 576
MseI TTAA 3 cut(s) 468, 512, 543
MslI CAYNNNNRTG 1 cut(s) 424
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 3 cut(s) 5, 12, 317
MspR9I CCNGG 2 cut(s) 6, 12
MunI CAATTG 1 cut(s) 576
Mva1269I GAATGC 1 cut(s) 409
MwoI GCNNNNNNNGC 2 cut(s) 501, 627
NciI CCSGG 2 cut(s) 6, 12
NcoI CCATGG 1 cut(s) 33
NdeII GATC 5 cut(s) 134, 270, 385, 652, 685
NlaIII CATG 2 cut(s) 37, 754
NlaIV GGNNCC 6 cut(s) 9, 10, 124, 136, 190, 321
NmeAIII GCCGAG 1 cut(s) 219
NsbI TGCGCA 1 cut(s) 631
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PctI GAATGC 1 cut(s) 409
PfeI GAWTC 2 cut(s) 305, 581
PflMI CCANNNNNTGG 1 cut(s) 671
PkrI GCNGC 1 cut(s) 780
PpuMI RGGWCCY 1 cut(s) 8
PshBI ATTAAT 1 cut(s) 468
Psp124BI GAGCTC 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 8
PspN4I GGNNCC 6 cut(s) 9, 10, 124, 136, 190, 321
PspPI GGNCC 4 cut(s) 8, 14, 122, 454
PspPPI RGGWCCY 1 cut(s) 8
PstNI CAGNNNCTG 1 cut(s) 479
PsuI RGATCY 2 cut(s) 134, 270
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 3 cut(s) 29, 418, 617
RsaNI GTAC 3 cut(s) 28, 417, 616
RseI CAYNNNNRTG 1 cut(s) 424
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 3 cut(s) 468, 512, 543
SatI GCNGC 1 cut(s) 779
Sau3AI GATC 5 cut(s) 134, 270, 385, 652, 685
Sau96I GGNCC 4 cut(s) 8, 14, 122, 454
ScrFI CCNGG 2 cut(s) 6, 12
SduI GDGCHC 4 cut(s) 198, 324, 440, 463
SfaNI GCATC 2 cut(s) 351, 466
SfcI CTRYAG 1 cut(s) 480
SinI GGWCC 2 cut(s) 8, 14
SmiMI CAYNNNNRTG 1 cut(s) 424
Sse9I AATT 2 cut(s) 513, 576
SspMI CTAG 3 cut(s) 47, 383, 707
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 2 cut(s) 4, 10
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 71
TaiI ACGT 1 cut(s) 231
TaqI TCGA 3 cut(s) 303, 329, 396
TasI AATT 2 cut(s) 513, 576
TatI WGTACW 1 cut(s) 615
TfiI GAWTC 2 cut(s) 305, 581
Tru1I TTAA 3 cut(s) 468, 512, 543
Tru9I TTAA 3 cut(s) 468, 512, 543
TscAI CASTG 2 cut(s) 344, 445
TseI GCWGC 1 cut(s) 778
TspRI CASTG 2 cut(s) 344, 445
Van91I CCANNNNNTGG 1 cut(s) 671
VneI GTGCAC 1 cut(s) 459
VpaK11BI GGWCC 2 cut(s) 8, 14
VspI ATTAAT 1 cut(s) 468
XspI CTAG 3 cut(s) 47, 383, 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.