RLG00000004236

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013665
Physical Location & Seq
Forward (+)
57490538 .. 57492633
2096 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004236

Sequence Viewer

Length: 852 bp
ATGCCGGGCCCCGGTCCGCACCTGATGTACGCCATGGGTTCGGGTCTGGCTCTGACCACTCTCACCAACGGCAGGTTCAGCCCCCACCACACCCTGATCTATACCGTCAACGCCTTCTTCGGCCCCGACATCGGATCCTTCACCGAATGGCTGGCCTCCCTCGTCGGTGGCTTCGGCTTCGACTTCGGCTCCGAGCTCGCTGACGCCATCCACCACCCCTTCTACTACGTCATCATTCTTGGCCTCCCTCTTTGTATTCTCTACTCCTGGCTCTCCAGAATCTTCCTCCTCAATAGGGTCCTCGACTCCTTCCCTCCGGTTCCCCTGACAAAGTTGCAGTGCATCTTGTTGGTGTCAGCCGGTTCTTTGTCACATTTTTTCCTCGATCACTTGTTCGAGGAAAATGGGCATTCTGGTACGTATACATGGATTTTGAGCACTGGTTGGTGGGAGGGCCGCGCACCTATTAATCCAGATGCTGTTGTTGTTGTCGGCCTTTTATGCATTGGCTTAATTGGTGGCTTTATTTACATCAACAGAGTTAAGCCTCCCAAGTCTGTTAACAAATATTCATCAAATGAATCATTCCAACTAATCATCATCATAGCAAGCCTGTACTGCTTATGGTGCACAAGCCAAGTATACTTGGTTAATCCTCGTCGGCCAGCAGTTGGTGAAGAAGCTGACCTTGGGCTTGTTACCATGATTTTTCAGGATTTTGTGGCAACAGGAGTTTGTGGTTCTCACATGAAGAGGCACCAACACTGCAAGGGAGTGTTTGTGCCAAAGAGTGATTTACGGTGCAAAGAGTATGCAAAGACAGAGATTTGGGATTCTAGGTTTGGGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

284

Amino Acids

31.44

Weight (kDa)

6.82

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013665)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g05110 FvH4_5g05110
malus_domestica MD06G1177600.v1.1
prunus_persica Prupe.5G176300_v2.0.a1 Prupe.5G176300_v2.0.a1 Prupe.5G176300_v2.0.a1
pyrus_communis pycom06g15760
rosa_chinensis RchiOBHm_Chr7g0193891
rosa_laevigata RLG00000004236
rosa_multiflora Rmu_sc0002389.1_g000014
rosa_roxburghii Rroxscaffold_3G00261730
rosa_rugosa Rorug07G0012500 Rorug07G0012500
rosa_samantha Rh7AG139400 Rh7BG139900 Rh7CG143600 Rh7DG140800
rosa_wichuraiana Rw7G011890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 63
AccB1I GGYRCC 1 cut(s) 756
AccB7I CCANNNNNTGG 1 cut(s) 671
AccI GTMKAC 2 cut(s) 422, 642
AccII CGCG 1 cut(s) 459
AciI CCGC 2 cut(s) 17, 457
AclWI GGATC 2 cut(s) 129, 142
AcoI YGGCCR 1 cut(s) 662
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 3 cut(s) 29, 418, 617
AfiI CCNNNNNNNGG 5 cut(s) 11, 72, 131, 295, 671
AjnI CCWGG 1 cut(s) 266
AjuI GAANNNNNNNTTGG 4 cut(s) 59, 91, 672, 704
AluBI AGCT 2 cut(s) 196, 683
AluI AGCT 2 cut(s) 196, 683
Alw21I GWGCWC 3 cut(s) 198, 440, 632
Alw44I GTGCAC 1 cut(s) 628
AlwI GGATC 2 cut(s) 129, 142
AlwNI CAGNNNCTG 1 cut(s) 479
AoxI GGCC 7 cut(s) 7, 121, 153, 241, 454, 493, 662
ApaI GGGCCC 1 cut(s) 11
ApaLI GTGCAC 1 cut(s) 628
AseI ATTAAT 1 cut(s) 468
AspLEI GCGC 1 cut(s) 461
AspS9I GGNCC 6 cut(s) 7, 8, 14, 122, 298, 454
AsuC2I CCSGG 2 cut(s) 6, 12
AsuHPI GGTGA 3 cut(s) 55, 133, 686
AvaII GGWCC 2 cut(s) 14, 298
BaeGI GKGCMC 2 cut(s) 11, 632
BamHI GGATCC 1 cut(s) 134
BanI GGYRCC 1 cut(s) 756
BanII GRGCYC 2 cut(s) 11, 198
Bbv12I GWGCWC 3 cut(s) 198, 440, 632
BccI CCATC 1 cut(s) 215
BceAI ACGGC 1 cut(s) 85
BciT130I CCWGG 1 cut(s) 268
BcnI CCSGG 2 cut(s) 6, 12
BfaI CTAG 1 cut(s) 837
BfuAI ACCTGC 1 cut(s) 63
BisI GCNGC 1 cut(s) 457
BlsI GCNGC 1 cut(s) 458
Bme1390I CCNGG 3 cut(s) 6, 12, 268
Bme18I GGWCC 2 cut(s) 14, 298
BmgT120I GGNCC 6 cut(s) 7, 8, 14, 122, 298, 454
BmiI GGNNCC 8 cut(s) 9, 10, 124, 136, 190, 299, 321, 758
BmrFI CCNGG 3 cut(s) 6, 12, 268
BmsI GCATC 2 cut(s) 351, 466
BpmI CTGGAG 1 cut(s) 259
BpuMI CCSGG 2 cut(s) 6, 12
BsaAI YACGTR 1 cut(s) 420
BsaHI GRCGYC 1 cut(s) 204
BsaJI CCNNGG 3 cut(s) 10, 33, 688
BsaWI WCCGGW 1 cut(s) 316
BsaXI ACNNNNNCTCC 4 cut(s) 173, 203, 765, 795
Bsc4I CCNNNNNNNGG 5 cut(s) 11, 72, 131, 295, 671
Bse118I RCCGGY 1 cut(s) 359
Bse1I ACTGG 1 cut(s) 445
BseBI CCWGG 1 cut(s) 268
BseDI CCNNGG 3 cut(s) 10, 33, 688
BseGI GGATG 1 cut(s) 207
BseLI CCNNNNNNNGG 5 cut(s) 11, 72, 131, 295, 671
BseNI ACTGG 1 cut(s) 445
BseRI GAGGAG 1 cut(s) 278
BseSI GKGCMC 2 cut(s) 11, 632
Bsh1236I CGCG 1 cut(s) 459
BshFI GGCC 7 cut(s) 9, 123, 155, 243, 456, 495, 664
BshNI GGYRCC 1 cut(s) 756
BsiHKAI GWGCWC 3 cut(s) 198, 440, 632
BsiSI CCGG 4 cut(s) 5, 12, 317, 360
BslI CCNNNNNNNGG 5 cut(s) 11, 72, 131, 295, 671
BsmI GAATGC 1 cut(s) 409
BsnI GGCC 7 cut(s) 9, 123, 155, 243, 456, 495, 664
Bsp120I GGGCCC 1 cut(s) 7
Bsp1286I GDGCHC 4 cut(s) 11, 198, 440, 632
Bsp143I GATC 3 cut(s) 96, 134, 385
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 2 cut(s) 17, 457
BspANI GGCC 7 cut(s) 9, 123, 155, 243, 456, 495, 664
BspFNI CGCG 1 cut(s) 459
BspLI GGNNCC 8 cut(s) 9, 10, 124, 136, 190, 299, 321, 758
BspMI ACCTGC 1 cut(s) 63
BspPI GGATC 2 cut(s) 129, 142
BspT107I GGYRCC 1 cut(s) 756
BsrFI RCCGGY 1 cut(s) 359
BsrI ACTGG 1 cut(s) 445
BssAI RCCGGY 1 cut(s) 359
BssECI CCNNGG 3 cut(s) 10, 33, 688
BssMI GATC 3 cut(s) 96, 134, 385
BssNAI GTATAC 2 cut(s) 423, 643
BssNI GRCGYC 1 cut(s) 204
BssT1I CCWWGG 2 cut(s) 33, 688
Bst1107I GTATAC 2 cut(s) 423, 643
Bst2UI CCWGG 1 cut(s) 268
Bst4CI ACNGT 2 cut(s) 106, 801
Bst6I CTCTTC 1 cut(s) 746
BstACI GRCGYC 1 cut(s) 204
BstBAI YACGTR 1 cut(s) 420
BstC8I GCNNGC 4 cut(s) 153, 198, 610, 666
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 207
BstFNI CGCG 1 cut(s) 459
BstHHI GCGC 1 cut(s) 461
BstKTI GATC 3 cut(s) 99, 137, 388
BstMBI GATC 3 cut(s) 96, 134, 385
BstMWI GCNNNNNNNGC 4 cut(s) 78, 501, 618, 627
BstNI CCWGG 1 cut(s) 268
BstSCI CCNGG 3 cut(s) 4, 10, 266
BstSLI GKGCMC 2 cut(s) 11, 632
BstSNI TACGTA 1 cut(s) 420
BstUI CGCG 1 cut(s) 459
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BstZ17I GTATAC 2 cut(s) 423, 643
BsuRI GGCC 7 cut(s) 9, 123, 155, 243, 456, 495, 664
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 1 cut(s) 207
BtsI GCAGTG 2 cut(s) 344, 763
BtsIMutI CAGTG 3 cut(s) 344, 438, 763
BveI ACCTGC 1 cut(s) 63
Cac8I GCNNGC 4 cut(s) 153, 198, 610, 666
CaiI CAGNNNCTG 1 cut(s) 479
CfoI GCGC 1 cut(s) 461
Cfr10I RCCGGY 1 cut(s) 359
Cfr13I GGNCC 6 cut(s) 7, 8, 14, 122, 298, 454
CpoI CGGWCCG 1 cut(s) 14
CseI GACGC 1 cut(s) 212
Csp6I GTAC 3 cut(s) 28, 417, 616
CspI CGGWCCG 1 cut(s) 14
CviAII CATG 4 cut(s) 34, 426, 703, 748
CviQI GTAC 3 cut(s) 28, 417, 616
DpnI GATC 3 cut(s) 98, 136, 387
DpnII GATC 3 cut(s) 96, 134, 385
EaeI YGGCCR 1 cut(s) 662
Eam1104I CTCTTC 1 cut(s) 746
EarI CTCTTC 1 cut(s) 746
Ecl136II GAGCTC 1 cut(s) 196
Eco105I TACGTA 1 cut(s) 420
Eco130I CCWWGG 2 cut(s) 33, 688
Eco24I GRGCYC 2 cut(s) 11, 198
Eco47I GGWCC 2 cut(s) 14, 298
Eco53kI GAGCTC 1 cut(s) 196
EcoICRI GAGCTC 1 cut(s) 196
EcoO109I RGGNCCY 2 cut(s) 8, 298
EcoRII CCWGG 1 cut(s) 266
EcoT14I CCWWGG 2 cut(s) 33, 688
EcoT22I ATGCAT 1 cut(s) 506
EcoT38I GRGCYC 2 cut(s) 11, 198
ErhI CCWWGG 2 cut(s) 33, 688
FaeI CATG 4 cut(s) 37, 429, 706, 751
FalI AAGNNNNNCTT 2 cut(s) 672, 704
FatI CATG 4 cut(s) 33, 425, 702, 747
FblI GTMKAC 2 cut(s) 422, 642
Fnu4HI GCNGC 1 cut(s) 457
FokI GGATG 1 cut(s) 194
FriOI GRGCYC 2 cut(s) 11, 198
Fsp4HI GCNGC 1 cut(s) 457
FspBI CTAG 1 cut(s) 837
GlaI GCGC 1 cut(s) 460
GluI GCNGC 1 cut(s) 457
GsuI CTGGAG 1 cut(s) 259
HaeIII GGCC 7 cut(s) 9, 123, 155, 243, 456, 495, 664
HapII CCGG 4 cut(s) 5, 12, 317, 360
HgaI GACGC 1 cut(s) 212
HhaI GCGC 1 cut(s) 461
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 4 cut(s) 37, 429, 706, 751
Hin6I GCGC 1 cut(s) 459
HinP1I GCGC 1 cut(s) 459
HincII GTYRAC 2 cut(s) 109, 562
HindII GTYRAC 2 cut(s) 109, 562
HinfI GANTC 4 cut(s) 279, 305, 581, 833
HpaI GTTAAC 1 cut(s) 562
HpaII CCGG 4 cut(s) 5, 12, 317, 360
HphI GGTGA 3 cut(s) 55, 133, 686
Hpy166II GTNNAC 5 cut(s) 109, 423, 562, 630, 643
Hpy188I TCNGA 3 cut(s) 54, 134, 193
Hpy188III TCNNGA 3 cut(s) 276, 473, 713
Hpy8I GTNNAC 5 cut(s) 109, 423, 562, 630, 643
Hpy99I CGWCG 2 cut(s) 167, 663
HpyAV CCTTC 4 cut(s) 124, 148, 229, 319
HpyCH4III ACNGT 2 cut(s) 106, 801
HpyCH4IV ACGT 2 cut(s) 228, 419
HpyCH4V TGCA 7 cut(s) 337, 342, 504, 630, 768, 804, 815
HpyF10VI GCNNNNNNNGC 4 cut(s) 78, 501, 618, 627
HpySE526I ACGT 2 cut(s) 228, 419
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 4 cut(s) 37, 429, 706, 751
HspAI GCGC 1 cut(s) 459
KspAI GTTAAC 1 cut(s) 562
Kzo9I GATC 3 cut(s) 96, 134, 385
LmnI GCTCC 1 cut(s) 194
LweI GCATC 2 cut(s) 351, 466
MaeI CTAG 1 cut(s) 837
MaeII ACGT 2 cut(s) 228, 419
MaeIII GTNAC 2 cut(s) 369, 697
MalI GATC 3 cut(s) 98, 136, 387
MboI GATC 3 cut(s) 96, 134, 385
MboII GAAGA 4 cut(s) 109, 274, 689, 763
MflI RGATCY 1 cut(s) 134
MhlI GDGCHC 4 cut(s) 11, 198, 440, 632
MluCI AATT 1 cut(s) 513
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 613
Mph1103I ATGCAT 1 cut(s) 506
MseI TTAA 5 cut(s) 468, 512, 543, 561, 651
MspI CCGG 4 cut(s) 5, 12, 317, 360
MspR9I CCNGG 3 cut(s) 6, 12, 268
Mva1269I GAATGC 1 cut(s) 409
MvaI CCWGG 1 cut(s) 268
MvnI CGCG 1 cut(s) 459
MwoI GCNNNNNNNGC 4 cut(s) 78, 501, 618, 627
NciI CCSGG 2 cut(s) 6, 12
NcoI CCATGG 1 cut(s) 33
NdeII GATC 3 cut(s) 96, 134, 385
NlaIII CATG 4 cut(s) 37, 429, 706, 751
NlaIV GGNNCC 8 cut(s) 9, 10, 124, 136, 190, 299, 321, 758
NmuCI GTSAC 1 cut(s) 369
NsiI ATGCAT 1 cut(s) 506
PctI GAATGC 1 cut(s) 409
PfeI GAWTC 3 cut(s) 279, 581, 833
PflMI CCANNNNNTGG 1 cut(s) 671
PkrI GCNGC 1 cut(s) 458
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
Ppu21I YACGTR 1 cut(s) 420
PpuMI RGGWCCY 1 cut(s) 298
PshBI ATTAAT 1 cut(s) 468
Psp124BI GAGCTC 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
PspN4I GGNNCC 8 cut(s) 9, 10, 124, 136, 190, 299, 321, 758
PspOMI GGGCCC 1 cut(s) 7
PspPI GGNCC 6 cut(s) 7, 8, 14, 122, 298, 454
PspPPI RGGWCCY 1 cut(s) 298
PstNI CAGNNNCTG 1 cut(s) 479
PsuI RGATCY 1 cut(s) 134
RsaI GTAC 3 cut(s) 29, 418, 617
RsaNI GTAC 3 cut(s) 28, 417, 616
Rsr2I CGGWCCG 1 cut(s) 14
RsrII CGGWCCG 1 cut(s) 14
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 5 cut(s) 468, 512, 543, 561, 651
SatI GCNGC 1 cut(s) 457
Sau3AI GATC 3 cut(s) 96, 134, 385
Sau96I GGNCC 6 cut(s) 7, 8, 14, 122, 298, 454
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 3 cut(s) 6, 12, 268
SduI GDGCHC 4 cut(s) 11, 198, 440, 632
SetI ASST 9 cut(s) 24, 77, 198, 231, 422, 466, 685, 690, 842
SfaNI GCATC 2 cut(s) 351, 466
SinI GGWCC 2 cut(s) 14, 298
SnaBI TACGTA 1 cut(s) 420
Sse9I AATT 1 cut(s) 513
SsiI CCGC 2 cut(s) 17, 457
SspI AATATT 1 cut(s) 569
SspMI CTAG 1 cut(s) 837
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 3 cut(s) 4, 10, 266
StyI CCWWGG 2 cut(s) 33, 688
TaaI ACNGT 2 cut(s) 106, 801
TaiI ACGT 2 cut(s) 231, 422
TaqI TCGA 4 cut(s) 180, 303, 384, 396
TasI AATT 1 cut(s) 513
TatI WGTACW 1 cut(s) 615
TauI GCSGC 1 cut(s) 459
TfiI GAWTC 3 cut(s) 279, 581, 833
Tru1I TTAA 5 cut(s) 468, 512, 543, 561, 651
Tru9I TTAA 5 cut(s) 468, 512, 543, 561, 651
TscAI CASTG 3 cut(s) 344, 445, 770
TseFI GTSAC 1 cut(s) 369
Tsp45I GTSAC 1 cut(s) 369
TspDTI ATGAA 3 cut(s) 561, 594, 764
TspRI CASTG 3 cut(s) 344, 445, 770
Van91I CCANNNNNTGG 1 cut(s) 671
VneI GTGCAC 1 cut(s) 628
VpaK11BI GGWCC 2 cut(s) 14, 298
VspI ATTAAT 1 cut(s) 468
XmiI GTMKAC 2 cut(s) 422, 642
XspI CTAG 1 cut(s) 837
Zsp2I ATGCAT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.