Rroxscaffold_3G00261730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0013665
Physical Location & Seq
Forward (+)
55902656 .. 55904991
2336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00261730.1

Sequence Viewer

Length: 435 bp
ATGCCGGGCCCCGGTCCGCACCTGATGTACGCCATGGGTTCGGGTCTGGCTCTGACCACTCTCACCAACGGCAGGTTCAGCCCCCACCACACCCTGATCTATACCGTCAACGCCTTCTTCGGCCCCGACATCGGATCCTTCACCGAATGGCTGGCCTCCCTCGTCGGCGGCTTCGGCTTCGACTTCGGCTCCGAGCTCGCTGACGCCATCCACCACCCCTTCTACTACGTCATCATTCTTGGCCTCCTCTTTGCATTCTCTACTCCTGGCTCTCCAGAATCTTCCTCCTCAATAGGGTCCTCGATTCCTTCCCCTCCGGAAAATGGGCATTCTGGTACGTATACATGGATTTTGAGCACTGGTTGGTGGGAGGGCCGCGCGCACCTATTAATCCAGATGCCGTTGTTGTCGTCGGCCTTTTATGCATTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.41

Weight (kDa)

5.44

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013665)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g05110 FvH4_5g05110
malus_domestica MD06G1177600.v1.1
prunus_persica Prupe.5G176300_v2.0.a1 Prupe.5G176300_v2.0.a1 Prupe.5G176300_v2.0.a1
pyrus_communis pycom06g15760
rosa_chinensis RchiOBHm_Chr7g0193891
rosa_laevigata RLG00000004236
rosa_multiflora Rmu_sc0002389.1_g000014
rosa_roxburghii Rroxscaffold_3G00261730
rosa_rugosa Rorug07G0012500 Rorug07G0012500
rosa_samantha Rh7AG139400 Rh7BG139900 Rh7CG143600 Rh7DG140800
rosa_wichuraiana Rw7G011890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 63
AccI GTMKAC 1 cut(s) 341
AccII CGCG 2 cut(s) 378, 380
AccIII TCCGGA 1 cut(s) 316
AciI CCGC 3 cut(s) 17, 168, 376
AclWI GGATC 2 cut(s) 129, 142
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 2 cut(s) 29, 337
AfiI CCNNNNNNNGG 5 cut(s) 11, 72, 131, 294, 323
AjnI CCWGG 1 cut(s) 265
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
Alw21I GWGCWC 2 cut(s) 198, 359
AlwI GGATC 2 cut(s) 129, 142
Aor13HI TCCGGA 1 cut(s) 316
AoxI GGCC 6 cut(s) 7, 121, 153, 241, 373, 414
ApaI GGGCCC 1 cut(s) 11
AseI ATTAAT 1 cut(s) 389
AspLEI GCGC 2 cut(s) 380, 382
AspS9I GGNCC 6 cut(s) 7, 8, 14, 122, 297, 373
AsuC2I CCSGG 2 cut(s) 6, 12
AsuHPI GGTGA 2 cut(s) 55, 133
AvaII GGWCC 2 cut(s) 14, 297
BaeGI GKGCMC 1 cut(s) 11
BamHI GGATCC 1 cut(s) 134
BanII GRGCYC 2 cut(s) 11, 198
Bbv12I GWGCWC 2 cut(s) 198, 359
BccI CCATC 1 cut(s) 215
BceAI ACGGC 2 cut(s) 85, 385
BciT130I CCWGG 1 cut(s) 267
BcnI CCSGG 2 cut(s) 6, 12
BfuAI ACCTGC 1 cut(s) 63
BisI GCNGC 2 cut(s) 169, 376
BlsI GCNGC 2 cut(s) 170, 377
Bme1390I CCNGG 3 cut(s) 6, 12, 267
Bme18I GGWCC 2 cut(s) 14, 297
BmgT120I GGNCC 6 cut(s) 7, 8, 14, 122, 297, 373
BmiI GGNNCC 6 cut(s) 9, 10, 124, 136, 190, 298
BmrFI CCNGG 3 cut(s) 6, 12, 267
BmsI GCATC 1 cut(s) 387
BpmI CTGGAG 1 cut(s) 258
BpuMI CCSGG 2 cut(s) 6, 12
BsaAI YACGTR 1 cut(s) 339
BsaHI GRCGYC 1 cut(s) 204
BsaJI CCNNGG 2 cut(s) 10, 33
BsaWI WCCGGW 1 cut(s) 316
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 5 cut(s) 11, 72, 131, 294, 323
Bse1I ACTGG 1 cut(s) 364
BseAI TCCGGA 1 cut(s) 316
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 2 cut(s) 10, 33
BseGI GGATG 1 cut(s) 207
BseLI CCNNNNNNNGG 5 cut(s) 11, 72, 131, 294, 323
BseNI ACTGG 1 cut(s) 364
BsePI GCGCGC 1 cut(s) 378
BseRI GAGGAG 2 cut(s) 236, 277
BseSI GKGCMC 1 cut(s) 11
Bsh1236I CGCG 2 cut(s) 378, 380
BshFI GGCC 6 cut(s) 9, 123, 155, 243, 375, 416
BsiHKAI GWGCWC 2 cut(s) 198, 359
BsiSI CCGG 3 cut(s) 5, 12, 317
BslI CCNNNNNNNGG 5 cut(s) 11, 72, 131, 294, 323
BsmI GAATGC 2 cut(s) 254, 328
BsnI GGCC 6 cut(s) 9, 123, 155, 243, 375, 416
Bsp120I GGGCCC 1 cut(s) 7
Bsp1286I GDGCHC 3 cut(s) 11, 198, 359
Bsp13I TCCGGA 1 cut(s) 316
Bsp143I GATC 2 cut(s) 96, 134
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 3 cut(s) 17, 168, 376
BspANI GGCC 6 cut(s) 9, 123, 155, 243, 375, 416
BspEI TCCGGA 1 cut(s) 316
BspFNI CGCG 2 cut(s) 378, 380
BspLI GGNNCC 6 cut(s) 9, 10, 124, 136, 190, 298
BspMI ACCTGC 1 cut(s) 63
BspPI GGATC 2 cut(s) 129, 142
BsrI ACTGG 1 cut(s) 364
BssECI CCNNGG 2 cut(s) 10, 33
BssHII GCGCGC 1 cut(s) 378
BssMI GATC 2 cut(s) 96, 134
BssNAI GTATAC 1 cut(s) 342
BssNI GRCGYC 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 33
Bst1107I GTATAC 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 1 cut(s) 106
BstACI GRCGYC 1 cut(s) 204
BstBAI YACGTR 1 cut(s) 339
BstC8I GCNNGC 3 cut(s) 153, 198, 380
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 207
BstFNI CGCG 2 cut(s) 378, 380
BstHHI GCGC 2 cut(s) 380, 382
BstKTI GATC 2 cut(s) 99, 137
BstMBI GATC 2 cut(s) 96, 134
BstMWI GCNNNNNNNGC 3 cut(s) 78, 174, 422
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 3 cut(s) 4, 10, 265
BstSLI GKGCMC 1 cut(s) 11
BstSNI TACGTA 1 cut(s) 339
BstUI CGCG 2 cut(s) 378, 380
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BstZ17I GTATAC 1 cut(s) 342
BsuRI GGCC 6 cut(s) 9, 123, 155, 243, 375, 416
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 357
BveI ACCTGC 1 cut(s) 63
Cac8I GCNNGC 3 cut(s) 153, 198, 380
CfoI GCGC 2 cut(s) 380, 382
Cfr13I GGNCC 6 cut(s) 7, 8, 14, 122, 297, 373
CpoI CGGWCCG 1 cut(s) 14
CseI GACGC 1 cut(s) 212
Csp6I GTAC 2 cut(s) 28, 336
CspI CGGWCCG 1 cut(s) 14
CviAII CATG 2 cut(s) 34, 345
CviQI GTAC 2 cut(s) 28, 336
DpnI GATC 2 cut(s) 98, 136
DpnII GATC 2 cut(s) 96, 134
Ecl136II GAGCTC 1 cut(s) 196
Eco105I TACGTA 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 33
Eco24I GRGCYC 2 cut(s) 11, 198
Eco47I GGWCC 2 cut(s) 14, 297
Eco53kI GAGCTC 1 cut(s) 196
EcoICRI GAGCTC 1 cut(s) 196
EcoO109I RGGNCCY 2 cut(s) 8, 297
EcoRII CCWGG 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 33
EcoT22I ATGCAT 1 cut(s) 427
EcoT38I GRGCYC 2 cut(s) 11, 198
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 2 cut(s) 37, 348
FaiI YATR 5 cut(s) 35, 102, 342, 346, 423
FatI CATG 2 cut(s) 33, 344
FblI GTMKAC 1 cut(s) 341
Fnu4HI GCNGC 2 cut(s) 169, 376
FokI GGATG 1 cut(s) 194
FriOI GRGCYC 2 cut(s) 11, 198
Fsp4HI GCNGC 2 cut(s) 169, 376
GlaI GCGC 2 cut(s) 379, 381
GluI GCNGC 2 cut(s) 169, 376
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 6 cut(s) 9, 123, 155, 243, 375, 416
HapII CCGG 3 cut(s) 5, 12, 317
HgaI GACGC 1 cut(s) 212
HhaI GCGC 2 cut(s) 380, 382
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 2 cut(s) 37, 348
Hin6I GCGC 2 cut(s) 378, 380
HinP1I GCGC 2 cut(s) 378, 380
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 2 cut(s) 278, 304
HpaII CCGG 3 cut(s) 5, 12, 317
HphI GGTGA 2 cut(s) 55, 133
Hpy166II GTNNAC 2 cut(s) 109, 342
Hpy188I TCNGA 3 cut(s) 54, 134, 193
Hpy188III TCNNGA 3 cut(s) 275, 317, 394
Hpy8I GTNNAC 2 cut(s) 109, 342
Hpy99I CGWCG 2 cut(s) 167, 415
HpyAV CCTTC 4 cut(s) 124, 148, 229, 318
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 2 cut(s) 228, 338
HpyCH4V TGCA 2 cut(s) 254, 425
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 174, 422
HpySE526I ACGT 2 cut(s) 228, 338
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 2 cut(s) 37, 348
HspAI GCGC 2 cut(s) 378, 380
Kpn2I TCCGGA 1 cut(s) 316
Kzo9I GATC 2 cut(s) 96, 134
LmnI GCTCC 1 cut(s) 194
LweI GCATC 1 cut(s) 387
MaeII ACGT 2 cut(s) 228, 338
MalI GATC 2 cut(s) 98, 136
MboI GATC 2 cut(s) 96, 134
MboII GAAGA 2 cut(s) 109, 273
MflI RGATCY 1 cut(s) 134
MhlI GDGCHC 3 cut(s) 11, 198, 359
MnlI CCTC 9 cut(s) 166, 170, 254, 257, 295, 298, 310, 324, 364
Mph1103I ATGCAT 1 cut(s) 427
MroI TCCGGA 1 cut(s) 316
MseI TTAA 2 cut(s) 389, 433
MspI CCGG 3 cut(s) 5, 12, 317
MspR9I CCNGG 3 cut(s) 6, 12, 267
Mva1269I GAATGC 2 cut(s) 254, 328
MvaI CCWGG 1 cut(s) 267
MvnI CGCG 2 cut(s) 378, 380
MwoI GCNNNNNNNGC 3 cut(s) 78, 174, 422
NciI CCSGG 2 cut(s) 6, 12
NcoI CCATGG 1 cut(s) 33
NdeII GATC 2 cut(s) 96, 134
NlaIII CATG 2 cut(s) 37, 348
NlaIV GGNNCC 6 cut(s) 9, 10, 124, 136, 190, 298
NsiI ATGCAT 1 cut(s) 427
PauI GCGCGC 1 cut(s) 378
PctI GAATGC 2 cut(s) 254, 328
PfeI GAWTC 2 cut(s) 278, 304
PkrI GCNGC 2 cut(s) 170, 377
Ppu21I YACGTR 1 cut(s) 339
PpuMI RGGWCCY 1 cut(s) 297
PshBI ATTAAT 1 cut(s) 389
Psp124BI GAGCTC 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 6 cut(s) 9, 10, 124, 136, 190, 298
PspOMI GGGCCC 1 cut(s) 7
PspPI GGNCC 6 cut(s) 7, 8, 14, 122, 297, 373
PspPPI RGGWCCY 1 cut(s) 297
PsuI RGATCY 1 cut(s) 134
PteI GCGCGC 1 cut(s) 378
RsaI GTAC 2 cut(s) 29, 337
RsaNI GTAC 2 cut(s) 28, 336
Rsr2I CGGWCCG 1 cut(s) 14
RsrII CGGWCCG 1 cut(s) 14
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 2 cut(s) 389, 433
SatI GCNGC 2 cut(s) 169, 376
Sau3AI GATC 2 cut(s) 96, 134
Sau96I GGNCC 6 cut(s) 7, 8, 14, 122, 297, 373
ScrFI CCNGG 3 cut(s) 6, 12, 267
SduI GDGCHC 3 cut(s) 11, 198, 359
SetI ASST 6 cut(s) 24, 77, 198, 231, 341, 387
SfaNI GCATC 1 cut(s) 387
SinI GGWCC 2 cut(s) 14, 297
SnaBI TACGTA 1 cut(s) 339
SsiI CCGC 3 cut(s) 17, 168, 376
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 3 cut(s) 4, 10, 265
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 2 cut(s) 231, 341
TaqI TCGA 2 cut(s) 180, 302
TauI GCSGC 2 cut(s) 171, 378
TfiI GAWTC 2 cut(s) 278, 304
Tru1I TTAA 2 cut(s) 389, 433
Tru9I TTAA 2 cut(s) 389, 433
TscAI CASTG 1 cut(s) 364
TspRI CASTG 1 cut(s) 364
VpaK11BI GGWCC 2 cut(s) 14, 297
VspI ATTAAT 1 cut(s) 389
XmiI GTMKAC 1 cut(s) 341
Zsp2I ATGCAT 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.