Rh7CG143600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0013665
Physical Location & Seq
Reverse (-)
11709017 .. 11711488
2472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG143600.1

Sequence Viewer

Length: 711 bp
ATGCCGGGCCCCGGTCCGCACCTGATGTACGCCATGGGTTCGGGTCTGGCTCTGACCACTCTCACCAACGGCAGGTTCAGCCCCCACCACACCCTGATCTATACCGTCAACGCCTTCTTCGGCCCCGACATCGGATCCTTCACCGAATGGCTGGCCTCCCTCGTCGGCGGCTTCGGCTTCGACTTCGGCTCCGAGCTCGCTGACGCCATCCACCACCCCTTCTACTACGTCATCATTCTTGGCCTCCCTCTTTGTATTCTCTACTCCTGGCTCTCCAGAATCTTCCTCCTCAATAGGGTCCTCGACTCCTTCCCTCCGGAAAATGGGCATTCTGGTACGTATACATGGATTTTGAGCACTGGTTGGTGGGAGGGCCGCGCACCTATTAATCCAGATGCTGTTGTTGTCGTCGGCCTTTTATGCATTGGCTTAATTGGTGGCTTTATTTACATCAACAGAGTTAAGCCTCCCAAGTCTGTTAACAAATATTCATCAAATGAATCATTCCAACTAATCATCATCATAGCAAGCCTGTACTGCTTATGGTGCACAAGCCAAGTATACTTGGTTAATCCTCGTCGGCCAGCAGTTGGTGAAGAAGCTGACCTTGGAGTTCTCGTGTTTCTAGCCACTTATCTCTTTTTCCCTCATTTTTTGTGTATATTGTCCATGCACCCAAGAGGTCATGAGGGGTTGCTGCTTCCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

26.15

Weight (kDa)

6.48

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013665)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g05110 FvH4_5g05110
malus_domestica MD06G1177600.v1.1
prunus_persica Prupe.5G176300_v2.0.a1 Prupe.5G176300_v2.0.a1 Prupe.5G176300_v2.0.a1
pyrus_communis pycom06g15760
rosa_chinensis RchiOBHm_Chr7g0193891
rosa_laevigata RLG00000004236
rosa_multiflora Rmu_sc0002389.1_g000014
rosa_roxburghii Rroxscaffold_3G00261730
rosa_rugosa Rorug07G0012500 Rorug07G0012500
rosa_samantha Rh7AG139400 Rh7BG139900 Rh7CG143600 Rh7DG140800
rosa_wichuraiana Rw7G011890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 63
AccB7I CCANNNNNTGG 1 cut(s) 590
AccI GTMKAC 2 cut(s) 341, 561
AccII CGCG 1 cut(s) 378
AccIII TCCGGA 1 cut(s) 316
AciI CCGC 3 cut(s) 17, 168, 376
AclWI GGATC 2 cut(s) 129, 142
AcoI YGGCCR 1 cut(s) 581
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 3 cut(s) 29, 337, 536
AfiI CCNNNNNNNGG 6 cut(s) 11, 72, 131, 295, 323, 590
AjnI CCWGG 1 cut(s) 266
AjuI GAANNNNNNNTTGG 4 cut(s) 59, 91, 591, 623
AluBI AGCT 2 cut(s) 196, 602
AluI AGCT 2 cut(s) 196, 602
Alw21I GWGCWC 3 cut(s) 198, 359, 551
Alw44I GTGCAC 1 cut(s) 547
AlwI GGATC 2 cut(s) 129, 142
AlwNI CAGNNNCTG 1 cut(s) 398
Aor13HI TCCGGA 1 cut(s) 316
AoxI GGCC 7 cut(s) 7, 121, 153, 241, 373, 412, 581
ApaI GGGCCC 1 cut(s) 11
ApaLI GTGCAC 1 cut(s) 547
ApeKI GCWGC 1 cut(s) 697
AseI ATTAAT 1 cut(s) 387
AspLEI GCGC 1 cut(s) 380
AspS9I GGNCC 6 cut(s) 7, 8, 14, 122, 298, 373
AsuC2I CCSGG 2 cut(s) 6, 12
AsuHPI GGTGA 3 cut(s) 55, 133, 605
AvaII GGWCC 2 cut(s) 14, 298
BaeGI GKGCMC 2 cut(s) 11, 551
BamHI GGATCC 1 cut(s) 134
BanII GRGCYC 2 cut(s) 11, 198
BauI CACGAG 1 cut(s) 617
Bbv12I GWGCWC 3 cut(s) 198, 359, 551
BbvI GCAGC 1 cut(s) 684
BccI CCATC 1 cut(s) 215
BceAI ACGGC 1 cut(s) 85
BciT130I CCWGG 1 cut(s) 268
BcnI CCSGG 2 cut(s) 6, 12
BfaI CTAG 1 cut(s) 626
BfuAI ACCTGC 1 cut(s) 63
BisI GCNGC 3 cut(s) 169, 376, 698
BlsI GCNGC 3 cut(s) 170, 377, 699
Bme1390I CCNGG 3 cut(s) 6, 12, 268
Bme18I GGWCC 2 cut(s) 14, 298
BmgT120I GGNCC 6 cut(s) 7, 8, 14, 122, 298, 373
BmiI GGNNCC 6 cut(s) 9, 10, 124, 136, 190, 299
BmrFI CCNGG 3 cut(s) 6, 12, 268
BmsI GCATC 1 cut(s) 385
BpmI CTGGAG 1 cut(s) 259
BpuMI CCSGG 2 cut(s) 6, 12
BsaAI YACGTR 1 cut(s) 339
BsaHI GRCGYC 1 cut(s) 204
BsaJI CCNNGG 3 cut(s) 10, 33, 607
BsaWI WCCGGW 1 cut(s) 316
BsaXI ACNNNNNCTCC 4 cut(s) 173, 203, 603, 633
Bsc4I CCNNNNNNNGG 6 cut(s) 11, 72, 131, 295, 323, 590
Bse1I ACTGG 1 cut(s) 364
BseAI TCCGGA 1 cut(s) 316
BseBI CCWGG 1 cut(s) 268
BseDI CCNNGG 3 cut(s) 10, 33, 607
BseGI GGATG 1 cut(s) 207
BseLI CCNNNNNNNGG 6 cut(s) 11, 72, 131, 295, 323, 590
BseNI ACTGG 1 cut(s) 364
BseRI GAGGAG 1 cut(s) 278
BseSI GKGCMC 2 cut(s) 11, 551
BseXI GCAGC 1 cut(s) 684
Bsh1236I CGCG 1 cut(s) 378
BshFI GGCC 7 cut(s) 9, 123, 155, 243, 375, 414, 583
BsiHKAI GWGCWC 3 cut(s) 198, 359, 551
BsiSI CCGG 3 cut(s) 5, 12, 317
BslI CCNNNNNNNGG 6 cut(s) 11, 72, 131, 295, 323, 590
BsmI GAATGC 1 cut(s) 328
BsnI GGCC 7 cut(s) 9, 123, 155, 243, 375, 414, 583
Bsp120I GGGCCC 1 cut(s) 7
Bsp1286I GDGCHC 4 cut(s) 11, 198, 359, 551
Bsp13I TCCGGA 1 cut(s) 316
Bsp143I GATC 2 cut(s) 96, 134
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 3 cut(s) 17, 168, 376
BspANI GGCC 7 cut(s) 9, 123, 155, 243, 375, 414, 583
BspEI TCCGGA 1 cut(s) 316
BspFNI CGCG 1 cut(s) 378
BspHI TCATGA 1 cut(s) 685
BspLI GGNNCC 6 cut(s) 9, 10, 124, 136, 190, 299
BspMI ACCTGC 1 cut(s) 63
BspPI GGATC 2 cut(s) 129, 142
BsrI ACTGG 1 cut(s) 364
BssECI CCNNGG 3 cut(s) 10, 33, 607
BssMI GATC 2 cut(s) 96, 134
BssNAI GTATAC 2 cut(s) 342, 562
BssNI GRCGYC 1 cut(s) 204
BssSI CACGAG 1 cut(s) 617
BssT1I CCWWGG 2 cut(s) 33, 607
Bst1107I GTATAC 2 cut(s) 342, 562
Bst2BI CACGAG 1 cut(s) 617
Bst2UI CCWGG 1 cut(s) 268
Bst4CI ACNGT 1 cut(s) 106
BstACI GRCGYC 1 cut(s) 204
BstBAI YACGTR 1 cut(s) 339
BstC8I GCNNGC 4 cut(s) 153, 198, 529, 585
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 207
BstFNI CGCG 1 cut(s) 378
BstHHI GCGC 1 cut(s) 380
BstKTI GATC 2 cut(s) 99, 137
BstMBI GATC 2 cut(s) 96, 134
BstMWI GCNNNNNNNGC 5 cut(s) 78, 174, 420, 537, 546
BstNI CCWGG 1 cut(s) 268
BstSCI CCNGG 3 cut(s) 4, 10, 266
BstSLI GKGCMC 2 cut(s) 11, 551
BstSNI TACGTA 1 cut(s) 339
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 1 cut(s) 684
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BstZ17I GTATAC 2 cut(s) 342, 562
BsuRI GGCC 7 cut(s) 9, 123, 155, 243, 375, 414, 583
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 357
BveI ACCTGC 1 cut(s) 63
Cac8I GCNNGC 4 cut(s) 153, 198, 529, 585
CaiI CAGNNNCTG 1 cut(s) 398
CciI TCATGA 1 cut(s) 685
CfoI GCGC 1 cut(s) 380
Cfr13I GGNCC 6 cut(s) 7, 8, 14, 122, 298, 373
CpoI CGGWCCG 1 cut(s) 14
CseI GACGC 1 cut(s) 212
Csp6I GTAC 3 cut(s) 28, 336, 535
CspI CGGWCCG 1 cut(s) 14
CviAII CATG 4 cut(s) 34, 345, 670, 686
CviQI GTAC 3 cut(s) 28, 336, 535
DpnI GATC 2 cut(s) 98, 136
DpnII GATC 2 cut(s) 96, 134
EaeI YGGCCR 1 cut(s) 581
Ecl136II GAGCTC 1 cut(s) 196
Eco105I TACGTA 1 cut(s) 339
Eco130I CCWWGG 2 cut(s) 33, 607
Eco24I GRGCYC 2 cut(s) 11, 198
Eco47I GGWCC 2 cut(s) 14, 298
Eco53kI GAGCTC 1 cut(s) 196
EcoICRI GAGCTC 1 cut(s) 196
EcoO109I RGGNCCY 2 cut(s) 8, 298
EcoRII CCWGG 1 cut(s) 266
EcoT14I CCWWGG 2 cut(s) 33, 607
EcoT22I ATGCAT 1 cut(s) 425
EcoT38I GRGCYC 2 cut(s) 11, 198
ErhI CCWWGG 2 cut(s) 33, 607
FaeI CATG 4 cut(s) 37, 348, 673, 689
FalI AAGNNNNNCTT 2 cut(s) 591, 623
FatI CATG 4 cut(s) 33, 344, 669, 685
FblI GTMKAC 2 cut(s) 341, 561
Fnu4HI GCNGC 3 cut(s) 169, 376, 698
FokI GGATG 1 cut(s) 194
FriOI GRGCYC 2 cut(s) 11, 198
Fsp4HI GCNGC 3 cut(s) 169, 376, 698
FspBI CTAG 1 cut(s) 626
GlaI GCGC 1 cut(s) 379
GluI GCNGC 3 cut(s) 169, 376, 698
GsuI CTGGAG 1 cut(s) 259
HaeIII GGCC 7 cut(s) 9, 123, 155, 243, 375, 414, 583
HapII CCGG 3 cut(s) 5, 12, 317
HgaI GACGC 1 cut(s) 212
HhaI GCGC 1 cut(s) 380
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 4 cut(s) 37, 348, 673, 689
Hin6I GCGC 1 cut(s) 378
HinP1I GCGC 1 cut(s) 378
HincII GTYRAC 2 cut(s) 109, 481
HindII GTYRAC 2 cut(s) 109, 481
HinfI GANTC 3 cut(s) 279, 305, 500
HpaI GTTAAC 1 cut(s) 481
HpaII CCGG 3 cut(s) 5, 12, 317
HphI GGTGA 3 cut(s) 55, 133, 605
Hpy166II GTNNAC 5 cut(s) 109, 342, 481, 549, 562
Hpy188I TCNGA 3 cut(s) 54, 134, 193
Hpy188III TCNNGA 4 cut(s) 276, 317, 392, 686
Hpy8I GTNNAC 5 cut(s) 109, 342, 481, 549, 562
Hpy99I CGWCG 3 cut(s) 167, 413, 582
HpyAV CCTTC 4 cut(s) 124, 148, 229, 319
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 2 cut(s) 228, 338
HpyCH4V TGCA 3 cut(s) 423, 549, 673
HpyF10VI GCNNNNNNNGC 5 cut(s) 78, 174, 420, 537, 546
HpySE526I ACGT 2 cut(s) 228, 338
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 4 cut(s) 37, 348, 673, 689
HspAI GCGC 1 cut(s) 378
Kpn2I TCCGGA 1 cut(s) 316
KspAI GTTAAC 1 cut(s) 481
Kzo9I GATC 2 cut(s) 96, 134
LmnI GCTCC 1 cut(s) 194
Lsp1109I GCAGC 1 cut(s) 684
LweI GCATC 1 cut(s) 385
MaeI CTAG 1 cut(s) 626
MaeII ACGT 2 cut(s) 228, 338
MalI GATC 2 cut(s) 98, 136
MboI GATC 2 cut(s) 96, 134
MboII GAAGA 3 cut(s) 109, 274, 608
MflI RGATCY 1 cut(s) 134
MhlI GDGCHC 4 cut(s) 11, 198, 359, 551
MluCI AATT 1 cut(s) 432
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 532
Mph1103I ATGCAT 1 cut(s) 425
MroI TCCGGA 1 cut(s) 316
MseI TTAA 5 cut(s) 387, 431, 462, 480, 570
MspI CCGG 3 cut(s) 5, 12, 317
MspR9I CCNGG 3 cut(s) 6, 12, 268
Mva1269I GAATGC 1 cut(s) 328
MvaI CCWGG 1 cut(s) 268
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 5 cut(s) 78, 174, 420, 537, 546
NciI CCSGG 2 cut(s) 6, 12
NcoI CCATGG 1 cut(s) 33
NdeII GATC 2 cut(s) 96, 134
NlaIII CATG 4 cut(s) 37, 348, 673, 689
NlaIV GGNNCC 6 cut(s) 9, 10, 124, 136, 190, 299
NsiI ATGCAT 1 cut(s) 425
PagI TCATGA 1 cut(s) 685
PctI GAATGC 1 cut(s) 328
PfeI GAWTC 2 cut(s) 279, 500
PflMI CCANNNNNTGG 1 cut(s) 590
PkrI GCNGC 3 cut(s) 170, 377, 699
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
Ppu21I YACGTR 1 cut(s) 339
PpuMI RGGWCCY 1 cut(s) 298
PshBI ATTAAT 1 cut(s) 387
Psp124BI GAGCTC 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
PspN4I GGNNCC 6 cut(s) 9, 10, 124, 136, 190, 299
PspOMI GGGCCC 1 cut(s) 7
PspPI GGNCC 6 cut(s) 7, 8, 14, 122, 298, 373
PspPPI RGGWCCY 1 cut(s) 298
PstNI CAGNNNCTG 1 cut(s) 398
PsuI RGATCY 1 cut(s) 134
RsaI GTAC 3 cut(s) 29, 337, 536
RsaNI GTAC 3 cut(s) 28, 336, 535
Rsr2I CGGWCCG 1 cut(s) 14
RsrII CGGWCCG 1 cut(s) 14
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 5 cut(s) 387, 431, 462, 480, 570
SatI GCNGC 3 cut(s) 169, 376, 698
Sau3AI GATC 2 cut(s) 96, 134
Sau96I GGNCC 6 cut(s) 7, 8, 14, 122, 298, 373
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 3 cut(s) 6, 12, 268
SduI GDGCHC 4 cut(s) 11, 198, 359, 551
SetI ASST 9 cut(s) 24, 77, 198, 231, 341, 385, 604, 609, 685
SfaNI GCATC 1 cut(s) 385
SinI GGWCC 2 cut(s) 14, 298
SnaBI TACGTA 1 cut(s) 339
Sse9I AATT 1 cut(s) 432
SsiI CCGC 3 cut(s) 17, 168, 376
SspI AATATT 1 cut(s) 488
SspMI CTAG 1 cut(s) 626
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 3 cut(s) 4, 10, 266
StyI CCWWGG 2 cut(s) 33, 607
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 2 cut(s) 231, 341
TaqI TCGA 2 cut(s) 180, 303
TasI AATT 1 cut(s) 432
TatI WGTACW 1 cut(s) 534
TauI GCSGC 2 cut(s) 171, 378
TfiI GAWTC 2 cut(s) 279, 500
Tru1I TTAA 5 cut(s) 387, 431, 462, 480, 570
Tru9I TTAA 5 cut(s) 387, 431, 462, 480, 570
TscAI CASTG 1 cut(s) 364
TseI GCWGC 1 cut(s) 697
TspDTI ATGAA 2 cut(s) 480, 513
TspRI CASTG 1 cut(s) 364
Van91I CCANNNNNTGG 1 cut(s) 590
VneI GTGCAC 1 cut(s) 547
VpaK11BI GGWCC 2 cut(s) 14, 298
VspI ATTAAT 1 cut(s) 387
XmiI GTMKAC 2 cut(s) 341, 561
XspI CTAG 1 cut(s) 626
Zsp2I ATGCAT 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.