Rh7AG139400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0013665
Physical Location & Seq
Reverse (-)
11242003 .. 11244760
2758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG139400.1

Sequence Viewer

Length: 558 bp
ATGCCGGGCCCCGGTCCGCACCTGATGTACGCCATGGGTTCGGGTCTGGCTCTGACCACTCTCACCAACGGCAGGTTCAGCCCCCACCACACCCTGATCTATACCGTCAACGCCTTCTTCGGCCCCGACATCGGATCCTTCACCGAATGGCTGGCCTCCCTCGTCGGCGGCTTCGGCTTCGACTTCGGCTCCGAGCTCGCTGACGCCATCCACCACCCCTTCTACTACGTCATCATTCTTGGCCTCCCTCTTTGTATTCTCTACTCCTGGCTCTCCAGAATCTTCCTCCTCAATAGGGTCCTCGACTCCTTCCCTCCGGTTCCCCTAACAAAGTTGCAGTGCATCTTGTTGGTGTCAGCCGGTTCTTTGTCACATTTTTTCCTCGATCACTTGTTCGAGGTAATGTGGAGGCGTCAATTGATAAGCGAATGTTGTTTAGATGTTCGGATGTTTGGTATTTGTTATATGCTAGCTGGATATGATTTAGAATTAACAAAAGTAAGAATGATCATTTACCTTAAAATATTATTCTCTATAAGGAGAGCATCAATGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.92

Weight (kDa)

7.04

Isoelectric Point (pI)

45.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013665)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g05110 FvH4_5g05110
malus_domestica MD06G1177600.v1.1
prunus_persica Prupe.5G176300_v2.0.a1 Prupe.5G176300_v2.0.a1 Prupe.5G176300_v2.0.a1
pyrus_communis pycom06g15760
rosa_chinensis RchiOBHm_Chr7g0193891
rosa_laevigata RLG00000004236
rosa_multiflora Rmu_sc0002389.1_g000014
rosa_roxburghii Rroxscaffold_3G00261730
rosa_rugosa Rorug07G0012500 Rorug07G0012500
rosa_samantha Rh7AG139400 Rh7BG139900 Rh7CG143600 Rh7DG140800
rosa_wichuraiana Rw7G011890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 63
AciI CCGC 2 cut(s) 17, 168
AclWI GGATC 2 cut(s) 129, 142
AcyI GRCGYC 2 cut(s) 204, 412
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 4 cut(s) 11, 72, 131, 295
AjnI CCWGG 1 cut(s) 266
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 2 cut(s) 196, 473
AluI AGCT 2 cut(s) 196, 473
Alw21I GWGCWC 1 cut(s) 198
AlwI GGATC 2 cut(s) 129, 142
AoxI GGCC 4 cut(s) 7, 121, 153, 241
ApaI GGGCCC 1 cut(s) 11
AspS9I GGNCC 5 cut(s) 7, 8, 14, 122, 298
AsuC2I CCSGG 2 cut(s) 6, 12
AsuHPI GGTGA 2 cut(s) 55, 133
AsuNHI GCTAGC 1 cut(s) 469
AvaII GGWCC 2 cut(s) 14, 298
BaeGI GKGCMC 1 cut(s) 11
BamHI GGATCC 1 cut(s) 134
BanII GRGCYC 2 cut(s) 11, 198
Bbv12I GWGCWC 1 cut(s) 198
BccI CCATC 1 cut(s) 215
BceAI ACGGC 1 cut(s) 85
BciT130I CCWGG 1 cut(s) 268
BclI TGATCA 1 cut(s) 507
BcnI CCSGG 2 cut(s) 6, 12
BfaI CTAG 1 cut(s) 470
BfuAI ACCTGC 1 cut(s) 63
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
Bme1390I CCNGG 3 cut(s) 6, 12, 268
Bme18I GGWCC 2 cut(s) 14, 298
BmgT120I GGNCC 5 cut(s) 7, 8, 14, 122, 298
BmiI GGNNCC 7 cut(s) 9, 10, 124, 136, 190, 299, 321
BmrFI CCNGG 3 cut(s) 6, 12, 268
BmsI GCATC 2 cut(s) 351, 554
BmtI GCTAGC 1 cut(s) 473
BpmI CTGGAG 1 cut(s) 259
BpuMI CCSGG 2 cut(s) 6, 12
BsaHI GRCGYC 2 cut(s) 204, 412
BsaJI CCNNGG 2 cut(s) 10, 33
BsaWI WCCGGW 1 cut(s) 316
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 4 cut(s) 11, 72, 131, 295
Bse118I RCCGGY 1 cut(s) 359
BseBI CCWGG 1 cut(s) 268
BseDI CCNNGG 2 cut(s) 10, 33
BseGI GGATG 2 cut(s) 207, 453
BseLI CCNNNNNNNGG 4 cut(s) 11, 72, 131, 295
BseRI GAGGAG 1 cut(s) 278
BseSI GKGCMC 1 cut(s) 11
BshFI GGCC 4 cut(s) 9, 123, 155, 243
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 4 cut(s) 5, 12, 317, 360
BslI CCNNNNNNNGG 4 cut(s) 11, 72, 131, 295
BsnI GGCC 4 cut(s) 9, 123, 155, 243
Bsp120I GGGCCC 1 cut(s) 7
Bsp1286I GDGCHC 2 cut(s) 11, 198
Bsp143I GATC 4 cut(s) 96, 134, 385, 507
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 2 cut(s) 17, 168
BspANI GGCC 4 cut(s) 9, 123, 155, 243
BspLI GGNNCC 7 cut(s) 9, 10, 124, 136, 190, 299, 321
BspMI ACCTGC 1 cut(s) 63
BspOI GCTAGC 1 cut(s) 473
BspPI GGATC 2 cut(s) 129, 142
BsrFI RCCGGY 1 cut(s) 359
BssAI RCCGGY 1 cut(s) 359
BssECI CCNNGG 2 cut(s) 10, 33
BssMI GATC 4 cut(s) 96, 134, 385, 507
BssNI GRCGYC 2 cut(s) 204, 412
BssT1I CCWWGG 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 268
Bst4CI ACNGT 1 cut(s) 106
BstACI GRCGYC 2 cut(s) 204, 412
BstC8I GCNNGC 3 cut(s) 153, 198, 471
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 207, 453
BstKTI GATC 4 cut(s) 99, 137, 388, 510
BstMBI GATC 4 cut(s) 96, 134, 385, 507
BstMWI GCNNNNNNNGC 2 cut(s) 78, 174
BstNI CCWGG 1 cut(s) 268
BstSCI CCNGG 3 cut(s) 4, 10, 266
BstSLI GKGCMC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BsuRI GGCC 4 cut(s) 9, 123, 155, 243
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 2 cut(s) 207, 453
BtsI GCAGTG 1 cut(s) 344
BtsIMutI CAGTG 1 cut(s) 344
BveI ACCTGC 1 cut(s) 63
Cac8I GCNNGC 3 cut(s) 153, 198, 471
Cfr10I RCCGGY 1 cut(s) 359
Cfr13I GGNCC 5 cut(s) 7, 8, 14, 122, 298
CpoI CGGWCCG 1 cut(s) 14
CseI GACGC 2 cut(s) 212, 401
Csp6I GTAC 1 cut(s) 28
CspI CGGWCCG 1 cut(s) 14
CviAII CATG 1 cut(s) 34
CviQI GTAC 1 cut(s) 28
DpnI GATC 4 cut(s) 98, 136, 387, 509
DpnII GATC 4 cut(s) 96, 134, 385, 507
Ecl136II GAGCTC 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 33
Eco24I GRGCYC 2 cut(s) 11, 198
Eco47I GGWCC 2 cut(s) 14, 298
Eco53kI GAGCTC 1 cut(s) 196
EcoICRI GAGCTC 1 cut(s) 196
EcoO109I RGGNCCY 2 cut(s) 8, 298
EcoRII CCWGG 1 cut(s) 266
EcoT14I CCWWGG 1 cut(s) 33
EcoT38I GRGCYC 2 cut(s) 11, 198
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 1 cut(s) 37
FaiI YATR 6 cut(s) 35, 102, 465, 467, 480, 536
FatI CATG 1 cut(s) 33
FbaI TGATCA 1 cut(s) 507
Fnu4HI GCNGC 1 cut(s) 169
FokI GGATG 2 cut(s) 194, 460
FriOI GRGCYC 2 cut(s) 11, 198
Fsp4HI GCNGC 1 cut(s) 169
FspBI CTAG 1 cut(s) 470
GluI GCNGC 1 cut(s) 169
GsuI CTGGAG 1 cut(s) 259
HaeIII GGCC 4 cut(s) 9, 123, 155, 243
HapII CCGG 4 cut(s) 5, 12, 317, 360
HgaI GACGC 2 cut(s) 212, 401
Hin1I GRCGYC 2 cut(s) 204, 412
Hin1II CATG 1 cut(s) 37
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 2 cut(s) 279, 305
HpaII CCGG 4 cut(s) 5, 12, 317, 360
HphI GGTGA 2 cut(s) 55, 133
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 4 cut(s) 54, 134, 193, 447
Hpy188III TCNNGA 1 cut(s) 276
Hpy8I GTNNAC 1 cut(s) 109
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 4 cut(s) 124, 148, 229, 319
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 2 cut(s) 337, 342
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 174
HpySE526I ACGT 1 cut(s) 228
Hsp92I GRCGYC 2 cut(s) 204, 412
Hsp92II CATG 1 cut(s) 37
Ksp22I TGATCA 1 cut(s) 507
Kzo9I GATC 4 cut(s) 96, 134, 385, 507
LmnI GCTCC 1 cut(s) 194
LweI GCATC 2 cut(s) 351, 554
MaeI CTAG 1 cut(s) 470
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 1 cut(s) 369
MalI GATC 4 cut(s) 98, 136, 387, 509
MboI GATC 4 cut(s) 96, 134, 385, 507
MboII GAAGA 2 cut(s) 109, 274
MfeI CAATTG 1 cut(s) 416
MflI RGATCY 1 cut(s) 134
MhlI GDGCHC 2 cut(s) 11, 198
MluCI AATT 2 cut(s) 416, 488
MlyI GAGTC 1 cut(s) 299
MseI TTAA 2 cut(s) 491, 519
MspI CCGG 4 cut(s) 5, 12, 317, 360
MspR9I CCNGG 3 cut(s) 6, 12, 268
MunI CAATTG 1 cut(s) 416
MvaI CCWGG 1 cut(s) 268
MwoI GCNNNNNNNGC 2 cut(s) 78, 174
NciI CCSGG 2 cut(s) 6, 12
NcoI CCATGG 1 cut(s) 33
NdeII GATC 4 cut(s) 96, 134, 385, 507
NheI GCTAGC 1 cut(s) 469
NlaIII CATG 1 cut(s) 37
NlaIV GGNNCC 7 cut(s) 9, 10, 124, 136, 190, 299, 321
NmuCI GTSAC 1 cut(s) 369
PfeI GAWTC 1 cut(s) 279
PkrI GCNGC 1 cut(s) 170
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
PpuMI RGGWCCY 1 cut(s) 298
Psp124BI GAGCTC 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
PspN4I GGNNCC 7 cut(s) 9, 10, 124, 136, 190, 299, 321
PspOMI GGGCCC 1 cut(s) 7
PspPI GGNCC 5 cut(s) 7, 8, 14, 122, 298
PspPPI RGGWCCY 1 cut(s) 298
PsuI RGATCY 1 cut(s) 134
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
Rsr2I CGGWCCG 1 cut(s) 14
RsrII CGGWCCG 1 cut(s) 14
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 2 cut(s) 491, 519
SatI GCNGC 1 cut(s) 169
Sau3AI GATC 4 cut(s) 96, 134, 385, 507
Sau96I GGNCC 5 cut(s) 7, 8, 14, 122, 298
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 3 cut(s) 6, 12, 268
SduI GDGCHC 2 cut(s) 11, 198
SetI ASST 7 cut(s) 24, 77, 198, 231, 402, 475, 519
SfaNI GCATC 2 cut(s) 351, 554
SinI GGWCC 2 cut(s) 14, 298
Sse9I AATT 2 cut(s) 416, 488
SsiI CCGC 2 cut(s) 17, 168
SspI AATATT 1 cut(s) 525
SspMI CTAG 1 cut(s) 470
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 3 cut(s) 4, 10, 266
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 1 cut(s) 231
TaqI TCGA 4 cut(s) 180, 303, 384, 396
TasI AATT 2 cut(s) 416, 488
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 1 cut(s) 279
Tru1I TTAA 2 cut(s) 491, 519
Tru9I TTAA 2 cut(s) 491, 519
TscAI CASTG 1 cut(s) 344
TseFI GTSAC 1 cut(s) 369
Tsp45I GTSAC 1 cut(s) 369
TspRI CASTG 1 cut(s) 344
VpaK11BI GGWCC 2 cut(s) 14, 298
XspI CTAG 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.