Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007616

Physical Location & Seq

Genomic Coordinates Reverse (-)

3858952 .. 3862445

Gene Structure 3494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g06570.t8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGAGATGGAGCGCGTGGTGGAGTTTCCTCACACTCACATGGATCGTCGTCCCCGAAAGCGAGCGCGTCTGGGCTGGGACGTTCCTCAGGCCCCAAAGGCTCAGGTAGGAATGTATTGTGGACAAGAGGTTGGGAATATGACAAGCTTTACTCCTTTGATGGCACCCTCACTCTACACTAGTTCTCTATTCGATAAGGAAGTAGCTCGAAATGGTTCACCCCCATGGAGAGAAGATGACAAGGATGGGCATTACATGTTTTCAGTTGGCGAAAATTTAACAGCTCGCTATAAAATCCAAAGCAAAATGGGAGAAGGTACATTTGGTCAGGTTTTGGAGTGCTGGGACAGAGAAAAAAAGGAAATGGTTGCCATAAAAATAGTCCGCGGGATCAAGAAATATCGTGAAGCAGCTATGATTGAAATTGAGATGCTGCAACAACTTGGTAAACACGATAAAGGTGGCAGCCGTTGTGTGCAATTACGGAACTGGTTTGACTATCGTAACCATATCTGTATTGTGTTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTCAAGAAAAACAATTACCGCTCATTTCCCATTGATCTCGTCCGTGAGATTGGCAGACAACTGTTGGAATGTGTAGCATTCATGCATGATCTCTCTCTTATTCATACCGACTTGAAGCCAGAGAACATACTTCTTGTTTCTCCTGATTACATTAGAGTCCCTGACTATAATAAGAGCTCATCTCGATCACCCAAAGATAGCTCTTACTATAAAAGAGTACCAAAGTCAAGTGCTATTAAGGTTATTGATTTTGGTAGCACAACTTATGAGCGTCAAGATCAGAACTATATTGTGTCAACCCGTCATTACCGTGCACCTGAGGTTATTCTTGGAATGGGCTGGAGCTACCCTTGCGATGTATGGAGCATTGGTTGTATCTTAGTGGAGTTGTGCACGGGTGAGGCTTTGTTCCAGACACATGAAAACTTGGAGCACCTTGCCATGATGGAGCGGGTACTTGGTCCCCTTCCCCAGCATATGTTGAAGAGAGCAGACCGACATGCTGAGAAGTATGTCAGGAGAGGTCGATTGGATTGGCCTGAAGGTGCTGCGTCGAGGGAGAGTATAAAGGCTGTTCAAAAACTTGCTCGTCTTCAGAATCTTATAATGCAGCACGTAGACCATTCAGCTGGTGACCTTATCCACCTCTTGCAGGGGCTACTGAAGTATGACCCCTCAGATAGACTTACAGCTCGTGAAGCTCTTAGGCATTCATTTTTCACACGGGACAATCTGAGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046483 GO:0046777 GO:0071704 GO:0090304 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

433

Amino Acids

50.17

Weight (kDa)

9.06

Isoelectric Point (pI)

50.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 323	6.3e-49	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	1 - 233	3.1e-20	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24740 AT4G24740 AT4G24740 AT4G24740 AT4G24740 AT4G24740 AT4G24740 AT4G24740
fragaria_vesca	FvH4_5g06570 FvH4_5g06570 FvH4_5g06570 FvH4_5g06570
malus_domestica	MD06G1164200.v1.1 MD14G1169100.v1.1
prunus_persica	Prupe.5G163600_v2.0.a1 Prupe.5G163600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0192261
rosa_laevigata	RLG00000004381
rosa_multiflora	Rmu_co8508131.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263140
rosa_rugosa	Rorug07G0000300
rosa_samantha	Rh7AG124400 Rh7CG128300
rosa_wichuraiana	Rw7G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1160
AccB1I	GGYRCC	1 cut(s)	163
AccBSI	CCGCTC	2 cut(s)	576, 1006
AccI	GTMKAC	1 cut(s)	1173
AccII	CGCG	3 cut(s)	15, 67, 387
AciI	CCGC	4 cut(s)	385, 387, 574, 1006
AclWI	GGATC	2 cut(s)	51, 398
AcsI	RAATTY	1 cut(s)	274
AcuI	CTGAAG	3 cut(s)	1116, 1133, 1238
AfaI	GTAC	3 cut(s)	319, 774, 1011
AfiI	CCNNNNNNNGG	1 cut(s)	1207
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	4 cut(s)	422, 670, 1039, 1133
AhlI	ACTAGT	1 cut(s)	179
AjuI	GAANNNNNNNTTGG	2 cut(s)	306, 338
Alw21I	GWGCWC	4 cut(s)	734, 871, 950, 990
Alw44I	GTGCAC	2 cut(s)	867, 946
AlwI	GGATC	2 cut(s)	51, 398
AoxI	GGCC	2 cut(s)	90, 1091
ApaLI	GTGCAC	2 cut(s)	867, 946
ApeKI	GCWGC	5 cut(s)	410, 433, 465, 1103, 1165
ApoI	RAATTY	1 cut(s)	274
Asp700I	GAANNNNTTC	1 cut(s)	214
AspLEI	GCGC	2 cut(s)	15, 67
AspS9I	GGNCC	3 cut(s)	91, 536, 1016
AsuHPI	GGTGA	4 cut(s)	210, 735, 965, 1199
AvaII	GGWCC	2 cut(s)	536, 1016
AxyI	CCTNAGG	2 cut(s)	87, 873
BaeGI	GKGCMC	2 cut(s)	871, 950
BanI	GGYRCC	1 cut(s)	163
BanII	GRGCYC	1 cut(s)	734
BauI	CACGAG	1 cut(s)	1248
BbsI	GAAGAC	1 cut(s)	1139
Bbv12I	GWGCWC	4 cut(s)	734, 871, 950, 990
BbvI	GCAGC	5 cut(s)	420, 422, 477, 1090, 1177
BccI	CCATC	3 cut(s)	154, 239, 994
BceAI	ACGGC	1 cut(s)	453
BcuI	ACTAGT	1 cut(s)	179
BfaI	CTAG	1 cut(s)	180
BglI	GCCNNNNNGGC	1 cut(s)	98
BisI	GCNGC	5 cut(s)	411, 434, 466, 1104, 1166
BlsI	GCNGC	5 cut(s)	412, 435, 467, 1105, 1167
Bme18I	GGWCC	2 cut(s)	536, 1016
BmgT120I	GGNCC	3 cut(s)	91, 536, 1016
BmiI	GGNNCC	3 cut(s)	93, 165, 1018
BmsI	GCATC	1 cut(s)	420
BpiI	GAAGAC	1 cut(s)	1139
BplI	GAGNNNNNCTC	2 cut(s)	721, 753
BpmI	CTGGAG	1 cut(s)	916
Bpu10I	CCTNAGC	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	542
BsaAI	YACGTR	1 cut(s)	1171
BsaJI	CCNNGG	2 cut(s)	224, 385
BsaXI	ACNNNNNCTCC	2 cut(s)	910, 940
Bsc4I	CCNNNNNNNGG	1 cut(s)	1207
Bse1I	ACTGG	1 cut(s)	494
Bse21I	CCTNAGG	2 cut(s)	87, 873
BseDI	CCNNGG	2 cut(s)	224, 385
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	1207
BseMII	CTCAG	6 cut(s)	101, 116, 864, 1050, 1245, 1280
BseNI	ACTGG	1 cut(s)	494
BseSI	GKGCMC	2 cut(s)	871, 950
BseXI	GCAGC	5 cut(s)	420, 422, 477, 1090, 1177
BseYI	CCCAGC	3 cut(s)	75, 342, 1026
Bsh1236I	CGCG	3 cut(s)	15, 67, 387
BshFI	GGCC	2 cut(s)	92, 1093
BshNI	GGYRCC	1 cut(s)	163
BsiHKAI	GWGCWC	4 cut(s)	734, 871, 950, 990
BslFI	GGGAC	6 cut(s)	36, 92, 359, 698, 1002, 1295
BslI	CCNNNNNNNGG	1 cut(s)	1207
BsmFI	GGGAC	6 cut(s)	36, 92, 359, 698, 1002, 1295
BsmI	GAATGC	2 cut(s)	632, 1264
BsnI	GGCC	2 cut(s)	92, 1093
Bsp1286I	GDGCHC	4 cut(s)	734, 871, 950, 990
Bsp143I	GATC	6 cut(s)	43, 390, 589, 643, 740, 832
Bsp19I	CCATGG	1 cut(s)	224
BspACI	CCGC	4 cut(s)	385, 387, 574, 1006
BspANI	GGCC	2 cut(s)	92, 1093
BspCNI	CTCAG	6 cut(s)	100, 115, 865, 1051, 1244, 1281
BspFNI	CGCG	3 cut(s)	15, 67, 387
BspLI	GGNNCC	3 cut(s)	93, 165, 1018
BspPI	GGATC	2 cut(s)	51, 398
BspT107I	GGYRCC	1 cut(s)	163
BsrBI	CCGCTC	2 cut(s)	576, 1006
BsrI	ACTGG	1 cut(s)	494
BssECI	CCNNGG	2 cut(s)	224, 385
BssMI	GATC	6 cut(s)	43, 390, 589, 643, 740, 832
BssSI	CACGAG	1 cut(s)	1248
BssT1I	CCWWGG	1 cut(s)	224
Bst2BI	CACGAG	1 cut(s)	1248
Bst4CI	ACNGT	2 cut(s)	618, 866
Bst6I	CTCTTC	1 cut(s)	1034
BstBAI	YACGTR	1 cut(s)	1171
BstC8I	GCNNGC	2 cut(s)	63, 286
BstDEI	CTNAG	8 cut(s)	87, 102, 873, 934, 1059, 1231, 1259, 1289
BstDSI	CCRYGG	2 cut(s)	224, 385
BstEII	GGTNACC	1 cut(s)	1187
BstENI	CCTNNNNNAGG	1 cut(s)	1205
BstF5I	GGATG	1 cut(s)	250
BstFNI	CGCG	3 cut(s)	15, 67, 387
BstHHI	GCGC	2 cut(s)	15, 67
BstKTI	GATC	6 cut(s)	46, 393, 592, 646, 743, 835
BstMBI	GATC	6 cut(s)	43, 390, 589, 643, 740, 832
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 906, 1253
BstNSI	RCATGY	2 cut(s)	259, 1058
BstPI	GGTNACC	1 cut(s)	1187
BstSLI	GKGCMC	2 cut(s)	871, 950
BstUI	CGCG	3 cut(s)	15, 67, 387
BstV1I	GCAGC	5 cut(s)	420, 422, 477, 1090, 1177
BstV2I	GAAGAC	1 cut(s)	1139
BstXI	CCANNNNNNTGG	1 cut(s)	1184
Bsu36I	CCTNAGG	2 cut(s)	87, 873
BsuRI	GGCC	2 cut(s)	92, 1093
BtgI	CCRYGG	2 cut(s)	224, 385
BtgZI	GCGATG	1 cut(s)	924
BtsCI	GGATG	1 cut(s)	250
Cac8I	GCNNGC	2 cut(s)	63, 286
CfoI	GCGC	2 cut(s)	15, 67
Cfr13I	GGNCC	3 cut(s)	91, 536, 1016
Cfr42I	CCGCGG	1 cut(s)	388
CseI	GACGC	3 cut(s)	56, 815, 1095
Csp6I	GTAC	3 cut(s)	318, 773, 1010
CviAII	CATG	8 cut(s)	40, 225, 256, 637, 641, 974, 997, 1055
CviQI	GTAC	3 cut(s)	318, 773, 1010
DdeI	CTNAG	8 cut(s)	87, 102, 873, 934, 1059, 1231, 1259, 1289
DpnI	GATC	6 cut(s)	45, 392, 591, 645, 742, 834
DpnII	GATC	6 cut(s)	43, 390, 589, 643, 740, 832
Eam1104I	CTCTTC	1 cut(s)	1034
EarI	CTCTTC	1 cut(s)	1034
Ecl136II	GAGCTC	1 cut(s)	732
Eco130I	CCWWGG	1 cut(s)	224
Eco24I	GRGCYC	1 cut(s)	734
Eco47I	GGWCC	2 cut(s)	536, 1016
Eco53kI	GAGCTC	1 cut(s)	732
Eco57I	CTGAAG	3 cut(s)	1116, 1133, 1238
Eco81I	CCTNAGG	2 cut(s)	87, 873
Eco91I	GGTNACC	1 cut(s)	1187
EcoICRI	GAGCTC	1 cut(s)	732
EcoNI	CCTNNNNNAGG	1 cut(s)	1205
EcoO109I	RGGNCCY	1 cut(s)	91
EcoO65I	GGTNACC	1 cut(s)	1187
EcoT14I	CCWWGG	1 cut(s)	224
EcoT22I	ATGCAT	1 cut(s)	642
EcoT38I	GRGCYC	1 cut(s)	734
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	8 cut(s)	43, 228, 259, 640, 644, 977, 1000, 1058
FaqI	GGGAC	6 cut(s)	36, 92, 359, 698, 1002, 1295
FatI	CATG	8 cut(s)	39, 224, 255, 636, 640, 973, 996, 1054
FauI	CCCGC	2 cut(s)	380, 999
FauNDI	CATATG	1 cut(s)	1032
FblI	GTMKAC	1 cut(s)	1173
Fnu4HI	GCNGC	5 cut(s)	411, 434, 466, 1104, 1166
FokI	GGATG	1 cut(s)	257
FriOI	GRGCYC	1 cut(s)	734
Fsp4HI	GCNGC	5 cut(s)	411, 434, 466, 1104, 1166
FspBI	CTAG	1 cut(s)	180
GlaI	GCGC	2 cut(s)	14, 66
GluI	GCNGC	5 cut(s)	411, 434, 466, 1104, 1166
GsaI	CCCAGC	3 cut(s)	79, 346, 1030
GsuI	CTGGAG	1 cut(s)	916
HaeIII	GGCC	2 cut(s)	92, 1093
HgaI	GACGC	3 cut(s)	56, 815, 1095
HhaI	GCGC	2 cut(s)	15, 67
Hin1II	CATG	8 cut(s)	43, 228, 259, 640, 644, 977, 1000, 1058
Hin6I	GCGC	2 cut(s)	13, 65
HinP1I	GCGC	2 cut(s)	13, 65
HincII	GTYRAC	1 cut(s)	852
HindII	GTYRAC	1 cut(s)	852
HindIII	AAGCTT	3 cut(s)	145, 530, 541
HinfI	GANTC	2 cut(s)	711, 1153
HphI	GGTGA	4 cut(s)	210, 735, 965, 1199
Hpy166II	GTNNAC	7 cut(s)	122, 218, 449, 852, 869, 948, 1174
Hpy188I	TCNGA	4 cut(s)	837, 1152, 1234, 1290
Hpy188III	TCNNGA	9 cut(s)	394, 404, 559, 698, 738, 830, 967, 1072, 1250
Hpy8I	GTNNAC	7 cut(s)	122, 218, 449, 852, 869, 948, 1174
Hpy99I	CGWCG	2 cut(s)	51, 1111
HpyAV	CCTTC	3 cut(s)	308, 1031, 1091
HpyCH4III	ACNGT	2 cut(s)	618, 866
HpyCH4IV	ACGT	2 cut(s)	81, 1170
HpyCH4V	TGCA	7 cut(s)	436, 478, 640, 869, 948, 1165, 1207
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 906, 1253
HpyF3I	CTNAG	8 cut(s)	87, 102, 873, 934, 1059, 1231, 1259, 1289
HpySE526I	ACGT	2 cut(s)	81, 1170
Hsp92II	CATG	8 cut(s)	43, 228, 259, 640, 644, 977, 1000, 1058
HspAI	GCGC	2 cut(s)	13, 65
KspI	CCGCGG	1 cut(s)	388
Kzo9I	GATC	6 cut(s)	43, 390, 589, 643, 740, 832
LmnI	GCTCC	5 cut(s)	10, 897, 918, 985, 1003
Lsp1109I	GCAGC	5 cut(s)	420, 422, 477, 1090, 1177
LweI	GCATC	1 cut(s)	420
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	2 cut(s)	81, 1170
MaeIII	GTNAC	2 cut(s)	503, 1187
MalI	GATC	6 cut(s)	45, 392, 591, 645, 742, 834
MbiI	CCGCTC	2 cut(s)	576, 1006
MboI	GATC	6 cut(s)	43, 390, 589, 643, 740, 832
MboII	GAAGA	3 cut(s)	245, 1051, 1139
MhlI	GDGCHC	4 cut(s)	734, 871, 950, 990
MluCI	AATT	4 cut(s)	274, 423, 479, 568
MlyI	GAGTC	1 cut(s)	720
MmeI	TCCRAC	1 cut(s)	600
Mph1103I	ATGCAT	1 cut(s)	642
MroXI	GAANNNNTTC	1 cut(s)	214
MseI	TTAA	2 cut(s)	278, 792
MslI	CAYNNNNRTG	3 cut(s)	38, 223, 864
MspA1I	CMGCKG	2 cut(s)	387, 1184
Mva1269I	GAATGC	2 cut(s)	632, 1264
MvnI	CGCG	3 cut(s)	15, 67, 387
MwoI	GCNNNNNNNGC	3 cut(s)	98, 906, 1253
NcoI	CCATGG	1 cut(s)	224
NdeI	CATATG	1 cut(s)	1032
NdeII	GATC	6 cut(s)	43, 390, 589, 643, 740, 832
NlaIII	CATG	8 cut(s)	43, 228, 259, 640, 644, 977, 1000, 1058
NlaIV	GGNNCC	3 cut(s)	93, 165, 1018
NmuCI	GTSAC	1 cut(s)	1187
NsiI	ATGCAT	1 cut(s)	642
NspI	RCATGY	2 cut(s)	259, 1058
PciI	ACATGT	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	1 cut(s)	52
PctI	GAATGC	2 cut(s)	632, 1264
PdmI	GAANNNNTTC	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	1153
PkrI	GCNGC	5 cut(s)	412, 435, 467, 1105, 1167
PleI	GAGTC	1 cut(s)	719
PpsI	GAGTC	1 cut(s)	719
Ppu21I	YACGTR	1 cut(s)	1171
PscI	ACATGT	1 cut(s)	255
PsiI	TTATAA	1 cut(s)	1160
Psp124BI	GAGCTC	1 cut(s)	734
PspEI	GGTNACC	1 cut(s)	1187
PspFI	CCCAGC	3 cut(s)	75, 342, 1026
PspN4I	GGNNCC	3 cut(s)	93, 165, 1018
PspPI	GGNCC	3 cut(s)	91, 536, 1016
PvuII	CAGCTG	1 cut(s)	1184
RsaI	GTAC	3 cut(s)	319, 774, 1011
RsaNI	GTAC	3 cut(s)	318, 773, 1010
RseI	CAYNNNNRTG	3 cut(s)	38, 223, 864
SacI	GAGCTC	1 cut(s)	734
SacII	CCGCGG	1 cut(s)	388
SaqAI	TTAA	2 cut(s)	278, 792
SatI	GCNGC	5 cut(s)	411, 434, 466, 1104, 1166
Sau3AI	GATC	6 cut(s)	43, 390, 589, 643, 740, 832
Sau96I	GGNCC	3 cut(s)	91, 536, 1016
SchI	GAGTC	1 cut(s)	720
SduI	GDGCHC	4 cut(s)	734, 871, 950, 990
SfaNI	GCATC	1 cut(s)	420
Sfr303I	CCGCGG	1 cut(s)	388
SgrBI	CCGCGG	1 cut(s)	388
SinI	GGWCC	2 cut(s)	536, 1016
SmiMI	CAYNNNNRTG	3 cut(s)	38, 223, 864
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
SpeI	ACTAGT	1 cut(s)	179
Sse9I	AATT	4 cut(s)	274, 423, 479, 568
SsiI	CCGC	4 cut(s)	385, 387, 574, 1006
SspMI	CTAG	1 cut(s)	180
SstI	GAGCTC	1 cut(s)	734
StyI	CCWWGG	1 cut(s)	224
TaaI	ACNGT	2 cut(s)	618, 866
TaiI	ACGT	2 cut(s)	84, 1173
TaqI	TCGA	5 cut(s)	192, 208, 739, 1081, 1109
TaqII	GACCGA	1 cut(s)	1065
TasI	AATT	4 cut(s)	274, 423, 479, 568
TfiI	GAWTC	1 cut(s)	1153
Tru1I	TTAA	2 cut(s)	278, 792
Tru9I	TTAA	2 cut(s)	278, 792
TseFI	GTSAC	1 cut(s)	1187
TseI	GCWGC	5 cut(s)	410, 433, 465, 1103, 1165
Tsp45I	GTSAC	1 cut(s)	1187
TspDTI	ATGAA	4 cut(s)	625, 647, 990, 1257
TspGWI	ACGGA	2 cut(s)	499, 587
VneI	GTGCAC	2 cut(s)	867, 946
VpaK11BI	GGWCC	2 cut(s)	536, 1016
XagI	CCTNNNNNAGG	1 cut(s)	1205
XapI	RAATTY	1 cut(s)	274
XceI	RCATGY	2 cut(s)	259, 1058
XmiI	GTMKAC	1 cut(s)	1173
XmnI	GAANNNNTTC	1 cut(s)	214
XspI	CTAG	1 cut(s)	180
Zsp2I	ATGCAT	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.