Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0007616

Physical Location & Seq

Genomic Coordinates Forward (+)

9948865 .. 9951923

Gene Structure 3059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G010660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGAGATGGAGCGCGTGGTGGAGTTTCCTCACACTCACATGGATCGTCGTCCCCGAAAGAGAGCGCGTCTGGGCTGGGACGTTCCTCAGGCCCCAAAGGCTCAGGTAGGAATGTTTTGTGGACAAGAGGTTGGGAATATGACAAGCTTTGCTCCTTTGATGGCACCCTCACTCTACACTACTAGTTCCCTATTTGATAAGGAAGTAGCTCGAAATGGTTCACCCCCATGGAGAGAAGATGACAAAGATGGGCATTACATGTTTTCGCTGGGAGAAAATTTAACAGCTCGCTACAAAATCCAAAGCAAAATGGGTGAAGGTACATTTGGTCAGGTTTTGGAGTGCTGGGACAGAGAAAAGAAGGAAATGGTTGCCATAAAAATTGTTCGTGGGATCAAGAAATATCGTGAAGCGGCTATGATTGAAATTGAAATGCTGCAACAACTTGGTAAACATGATAAAGGTGGCAGCCGTTGTGTGCAATTACGGAACTGGTTTGACTATCGTAACCATATCTGTATTGTGTTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTCAAGAAAAACAATTACCGCTCATTTCCCATTGATCTCGTCCGTGAGATTGGCAGACAACTGTTGGAATGTGTAGCATTCATGCATGATCTCTCTCTTATTCATACCGACTTGAAGCCAGAGAACATTCTTCTTGTTTCTCAGGATTACGTTAGAGTCCCGGATTATAATAAGAGCTCATCTCGATCACCCAAAGATAGCTCTTACTATAAAAGAGTTCCAAAGTCGAGTGCTATTAAGGTGATTGATTTTGGTAGCACAACTTATGAGCGTCAAGATCAGAACTATATTGTATCAACCCGTCATTACCGTGCACCAGAGGTTATTCTTGGAATGGGCTGGAGCTACCCTTGCGATGTATGGAGCATTGGTTGTATCTTAGTGGAGTTGTGCACGGGTGAGGCTTTGTTTCAGACTCATGAGAACTTGGAACACCTTGCCATGATGGAGCGGGTACTTGGTCCCCTGCCCCAGCATATATTAAAGAGAGCAGACCGACATGCTGACAAGTACGTCAGGAGAGGTAGATTGGATTGGCCAGAAGGTGCTGCCTCAAGAGAGAGTATCAAGGCTGTTCAGAAGCTTGCTCACCATTCAGCTGGTGACCTTATCCACCTGTTGCAGGGGCTACTGAAGTATGATCCTTCAGATAGACTTACAGCTCGTGAAGCCCTTAGGCATTCGTTTTTTACACGGGACAATCTGAGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046483 GO:0046777 GO:0071704 GO:0090304 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

423

Amino Acids

49.01

Weight (kDa)

9.07

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	98 - 416	1.3e-50	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	99 - 336	2.9e-21	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24740 AT4G24740 AT4G24740 AT4G24740 AT4G24740 AT4G24740 AT4G24740 AT4G24740
fragaria_vesca	FvH4_5g06570 FvH4_5g06570 FvH4_5g06570 FvH4_5g06570
malus_domestica	MD06G1164200.v1.1 MD14G1169100.v1.1
prunus_persica	Prupe.5G163600_v2.0.a1 Prupe.5G163600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0192261
rosa_laevigata	RLG00000004381
rosa_multiflora	Rmu_co8508131.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263140
rosa_rugosa	Rorug07G0000300
rosa_samantha	Rh7AG124400 Rh7CG128300
rosa_wichuraiana	Rw7G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	726
AasI	GACNNNNNNGTC	1 cut(s)	1070
AccB1I	GGYRCC	1 cut(s)	163
AccBSI	CCGCTC	2 cut(s)	579, 1009
AccII	CGCG	2 cut(s)	15, 67
AciI	CCGC	3 cut(s)	413, 577, 1009
AclWI	GGATC	3 cut(s)	51, 401, 1193
AcoI	YGGCCR	1 cut(s)	1094
AcsI	RAATTY	1 cut(s)	277
AcuI	CTGAAG	2 cut(s)	1188, 1211
AfaI	GTAC	3 cut(s)	322, 1014, 1070
AfiI	CCNNNNNNNGG	1 cut(s)	1180
AflIII	ACRYGT	1 cut(s)	258
AgsI	TTSAA	3 cut(s)	425, 431, 673
AhlI	ACTAGT	1 cut(s)	182
AjuI	GAANNNNNNNTTGG	2 cut(s)	309, 341
Alw21I	GWGCWC	3 cut(s)	737, 874, 953
Alw44I	GTGCAC	2 cut(s)	870, 949
AlwI	GGATC	3 cut(s)	51, 401, 1193
AoxI	GGCC	2 cut(s)	90, 1094
ApaLI	GTGCAC	2 cut(s)	870, 949
ApeKI	GCWGC	3 cut(s)	436, 468, 1106
ApoI	RAATTY	1 cut(s)	277
Asp700I	GAANNNNTTC	1 cut(s)	217
AspLEI	GCGC	2 cut(s)	15, 67
AspS9I	GGNCC	3 cut(s)	91, 539, 1019
AsuC2I	CCSGG	1 cut(s)	719
AsuHPI	GGTGA	7 cut(s)	213, 326, 738, 811, 968, 1139, 1172
AvaII	GGWCC	2 cut(s)	539, 1019
AxyI	CCTNAGG	2 cut(s)	87, 1232
BaeGI	GKGCMC	2 cut(s)	874, 953
BalI	TGGCCA	1 cut(s)	1096
BanI	GGYRCC	1 cut(s)	163
BanII	GRGCYC	1 cut(s)	737
BauI	CACGAG	1 cut(s)	1221
Bbv12I	GWGCWC	3 cut(s)	737, 874, 953
BbvI	GCAGC	3 cut(s)	423, 480, 1093
BccI	CCATC	3 cut(s)	154, 242, 997
BceAI	ACGGC	1 cut(s)	456
BcnI	CCSGG	1 cut(s)	719
BcuI	ACTAGT	1 cut(s)	182
BfaI	CTAG	1 cut(s)	183
BglI	GCCNNNNNGGC	1 cut(s)	98
BisI	GCNGC	4 cut(s)	414, 437, 469, 1107
BlsI	GCNGC	4 cut(s)	415, 438, 470, 1108
Bme1390I	CCNGG	1 cut(s)	719
Bme18I	GGWCC	2 cut(s)	539, 1019
BmgT120I	GGNCC	3 cut(s)	91, 539, 1019
BmiI	GGNNCC	3 cut(s)	93, 165, 1021
BmrFI	CCNGG	1 cut(s)	719
BplI	GAGNNNNNCTC	2 cut(s)	724, 756
BpmI	CTGGAG	1 cut(s)	919
Bpu10I	CCTNAGC	1 cut(s)	102
BpuEI	CTTGAG	2 cut(s)	545, 1096
BpuMI	CCSGG	1 cut(s)	719
BsaJI	CCNNGG	1 cut(s)	227
BsaXI	ACNNNNNCTCC	2 cut(s)	913, 943
Bsc4I	CCNNNNNNNGG	1 cut(s)	1180
Bse1I	ACTGG	1 cut(s)	497
Bse21I	CCTNAGG	2 cut(s)	87, 1232
BseDI	CCNNGG	1 cut(s)	227
BseLI	CCNNNNNNNGG	1 cut(s)	1180
BseMII	CTCAG	4 cut(s)	101, 116, 713, 1253
BseNI	ACTGG	1 cut(s)	497
BseSI	GKGCMC	2 cut(s)	874, 953
BseXI	GCAGC	3 cut(s)	423, 480, 1093
BseYI	CCCAGC	4 cut(s)	75, 268, 345, 1029
Bsh1236I	CGCG	2 cut(s)	15, 67
BshFI	GGCC	2 cut(s)	92, 1096
BshNI	GGYRCC	1 cut(s)	163
BsiHKAI	GWGCWC	3 cut(s)	737, 874, 953
BsiSI	CCGG	1 cut(s)	719
BslFI	GGGAC	6 cut(s)	36, 92, 362, 701, 1005, 1268
BslI	CCNNNNNNNGG	1 cut(s)	1180
BsmFI	GGGAC	6 cut(s)	36, 92, 362, 701, 1005, 1268
BsmI	GAATGC	2 cut(s)	635, 1237
BsnI	GGCC	2 cut(s)	92, 1096
Bsp1286I	GDGCHC	3 cut(s)	737, 874, 953
Bsp143I	GATC	7 cut(s)	43, 393, 592, 646, 743, 835, 1198
Bsp19I	CCATGG	1 cut(s)	227
BspACI	CCGC	3 cut(s)	413, 577, 1009
BspANI	GGCC	2 cut(s)	92, 1096
BspCNI	CTCAG	4 cut(s)	100, 115, 712, 1254
BspFNI	CGCG	2 cut(s)	15, 67
BspHI	TCATGA	1 cut(s)	976
BspLI	GGNNCC	3 cut(s)	93, 165, 1021
BspPI	GGATC	3 cut(s)	51, 401, 1193
BspT107I	GGYRCC	1 cut(s)	163
BsrBI	CCGCTC	2 cut(s)	579, 1009
BsrI	ACTGG	1 cut(s)	497
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	7 cut(s)	43, 393, 592, 646, 743, 835, 1198
BssSI	CACGAG	1 cut(s)	1221
BssT1I	CCWWGG	1 cut(s)	227
Bst2BI	CACGAG	1 cut(s)	1221
Bst4CI	ACNGT	2 cut(s)	621, 869
BstC8I	GCNNGC	2 cut(s)	289, 1143
BstDEI	CTNAG	6 cut(s)	87, 102, 699, 937, 1232, 1262
BstDSI	CCRYGG	1 cut(s)	227
BstEII	GGTNACC	1 cut(s)	1160
BstENI	CCTNNNNNAGG	1 cut(s)	1178
BstFNI	CGCG	2 cut(s)	15, 67
BstHHI	GCGC	2 cut(s)	15, 67
BstKTI	GATC	7 cut(s)	46, 396, 595, 649, 746, 838, 1201
BstMBI	GATC	7 cut(s)	43, 393, 592, 646, 743, 835, 1198
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 909, 1226
BstNSI	RCATGY	2 cut(s)	262, 1061
BstPI	GGTNACC	1 cut(s)	1160
BstSCI	CCNGG	1 cut(s)	717
BstSLI	GKGCMC	2 cut(s)	874, 953
BstUI	CGCG	2 cut(s)	15, 67
BstV1I	GCAGC	3 cut(s)	423, 480, 1093
BstXI	CCANNNNNNTGG	1 cut(s)	1157
Bsu36I	CCTNAGG	2 cut(s)	87, 1232
BsuRI	GGCC	2 cut(s)	92, 1096
BtgI	CCRYGG	1 cut(s)	227
BtgZI	GCGATG	1 cut(s)	927
Cac8I	GCNNGC	2 cut(s)	289, 1143
CciI	TCATGA	1 cut(s)	976
CfoI	GCGC	2 cut(s)	15, 67
Cfr13I	GGNCC	3 cut(s)	91, 539, 1019
CseI	GACGC	2 cut(s)	56, 818
Csp6I	GTAC	3 cut(s)	321, 1013, 1069
CviAII	CATG	9 cut(s)	40, 228, 259, 455, 640, 644, 977, 1000, 1058
CviQI	GTAC	3 cut(s)	321, 1013, 1069
DdeI	CTNAG	6 cut(s)	87, 102, 699, 937, 1232, 1262
DpnI	GATC	7 cut(s)	45, 395, 594, 648, 745, 837, 1200
DpnII	GATC	7 cut(s)	43, 393, 592, 646, 743, 835, 1198
DrdI	GACNNNNNNGTC	1 cut(s)	1070
DseDI	GACNNNNNNGTC	1 cut(s)	1070
EaeI	YGGCCR	1 cut(s)	1094
Ecl136II	GAGCTC	1 cut(s)	735
Eco130I	CCWWGG	1 cut(s)	227
Eco24I	GRGCYC	1 cut(s)	737
Eco47I	GGWCC	2 cut(s)	539, 1019
Eco53kI	GAGCTC	1 cut(s)	735
Eco57I	CTGAAG	2 cut(s)	1188, 1211
Eco81I	CCTNAGG	2 cut(s)	87, 1232
Eco91I	GGTNACC	1 cut(s)	1160
EcoICRI	GAGCTC	1 cut(s)	735
EcoNI	CCTNNNNNAGG	1 cut(s)	1178
EcoO109I	RGGNCCY	1 cut(s)	91
EcoO65I	GGTNACC	1 cut(s)	1160
EcoT14I	CCWWGG	1 cut(s)	227
EcoT22I	ATGCAT	1 cut(s)	645
EcoT38I	GRGCYC	1 cut(s)	737
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	9 cut(s)	43, 231, 262, 458, 643, 647, 980, 1003, 1061
FaqI	GGGAC	6 cut(s)	36, 92, 362, 701, 1005, 1268
FatI	CATG	9 cut(s)	39, 227, 258, 454, 639, 643, 976, 999, 1057
FauI	CCCGC	1 cut(s)	1002
Fnu4HI	GCNGC	4 cut(s)	414, 437, 469, 1107
FriOI	GRGCYC	1 cut(s)	737
Fsp4HI	GCNGC	4 cut(s)	414, 437, 469, 1107
FspBI	CTAG	1 cut(s)	183
GlaI	GCGC	2 cut(s)	14, 66
GluI	GCNGC	4 cut(s)	414, 437, 469, 1107
GsaI	CCCAGC	4 cut(s)	79, 272, 349, 1033
GsuI	CTGGAG	1 cut(s)	919
HaeIII	GGCC	2 cut(s)	92, 1096
HapII	CCGG	1 cut(s)	719
HgaI	GACGC	2 cut(s)	56, 818
HhaI	GCGC	2 cut(s)	15, 67
Hin1II	CATG	9 cut(s)	43, 231, 262, 458, 643, 647, 980, 1003, 1061
Hin6I	GCGC	2 cut(s)	13, 65
HinP1I	GCGC	2 cut(s)	13, 65
HindIII	AAGCTT	4 cut(s)	145, 533, 544, 1139
HinfI	GANTC	2 cut(s)	714, 973
HpaII	CCGG	1 cut(s)	719
HphI	GGTGA	7 cut(s)	213, 326, 738, 811, 968, 1139, 1172
Hpy166II	GTNNAC	5 cut(s)	122, 221, 452, 872, 951
Hpy188I	TCNGA	5 cut(s)	840, 972, 1137, 1207, 1263
Hpy8I	GTNNAC	5 cut(s)	122, 221, 452, 872, 951
Hpy99I	CGWCG	1 cut(s)	51
HpyAV	CCTTC	4 cut(s)	311, 355, 1094, 1212
HpyCH4III	ACNGT	2 cut(s)	621, 869
HpyCH4IV	ACGT	3 cut(s)	81, 708, 1071
HpyCH4V	TGCA	6 cut(s)	439, 481, 643, 872, 951, 1180
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 909, 1226
HpyF3I	CTNAG	6 cut(s)	87, 102, 699, 937, 1232, 1262
HpySE526I	ACGT	3 cut(s)	81, 708, 1071
Hsp92II	CATG	9 cut(s)	43, 231, 262, 458, 643, 647, 980, 1003, 1061
HspAI	GCGC	2 cut(s)	13, 65
Kzo9I	GATC	7 cut(s)	43, 393, 592, 646, 743, 835, 1198
LmnI	GCTCC	5 cut(s)	10, 157, 900, 921, 1006
Lsp1109I	GCAGC	3 cut(s)	423, 480, 1093
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	3 cut(s)	81, 708, 1071
MaeIII	GTNAC	2 cut(s)	506, 1160
MalI	GATC	7 cut(s)	45, 395, 594, 648, 745, 837, 1200
MbiI	CCGCTC	2 cut(s)	579, 1009
MboI	GATC	7 cut(s)	43, 393, 592, 646, 743, 835, 1198
MboII	GAAGA	2 cut(s)	248, 680
MhlI	GDGCHC	3 cut(s)	737, 874, 953
MlsI	TGGCCA	1 cut(s)	1096
MluCI	AATT	5 cut(s)	277, 381, 426, 482, 571
MluNI	TGGCCA	1 cut(s)	1096
MlyI	GAGTC	2 cut(s)	723, 967
MmeI	TCCRAC	1 cut(s)	603
MnlI	CCTC	9 cut(s)	39, 96, 121, 178, 871, 952, 1073, 1120, 1257
Mox20I	TGGCCA	1 cut(s)	1096
Mph1103I	ATGCAT	1 cut(s)	645
MroXI	GAANNNNTTC	1 cut(s)	217
MscI	TGGCCA	1 cut(s)	1096
MseI	TTAA	3 cut(s)	281, 795, 1040
MslI	CAYNNNNRTG	3 cut(s)	38, 226, 867
Msp20I	TGGCCA	1 cut(s)	1096
MspA1I	CMGCKG	1 cut(s)	1157
MspI	CCGG	1 cut(s)	719
MspR9I	CCNGG	1 cut(s)	719
Mva1269I	GAATGC	2 cut(s)	635, 1237
MvnI	CGCG	2 cut(s)	15, 67
MwoI	GCNNNNNNNGC	3 cut(s)	98, 909, 1226
NciI	CCSGG	1 cut(s)	719
NcoI	CCATGG	1 cut(s)	227
NdeII	GATC	7 cut(s)	43, 393, 592, 646, 743, 835, 1198
NlaIII	CATG	9 cut(s)	43, 231, 262, 458, 643, 647, 980, 1003, 1061
NlaIV	GGNNCC	3 cut(s)	93, 165, 1021
NmuCI	GTSAC	1 cut(s)	1160
NsiI	ATGCAT	1 cut(s)	645
NspI	RCATGY	2 cut(s)	262, 1061
PagI	TCATGA	1 cut(s)	976
PciI	ACATGT	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	1 cut(s)	52
PctI	GAATGC	2 cut(s)	635, 1237
PdmI	GAANNNNTTC	1 cut(s)	217
PfoI	TCCNGGA	1 cut(s)	717
PkrI	GCNGC	4 cut(s)	415, 438, 470, 1108
PleI	GAGTC	2 cut(s)	722, 967
PpsI	GAGTC	2 cut(s)	722, 967
PscI	ACATGT	1 cut(s)	258
PsiI	TTATAA	1 cut(s)	726
Psp124BI	GAGCTC	1 cut(s)	737
PspEI	GGTNACC	1 cut(s)	1160
PspFI	CCCAGC	4 cut(s)	75, 268, 345, 1029
PspN4I	GGNNCC	3 cut(s)	93, 165, 1021
PspPI	GGNCC	3 cut(s)	91, 539, 1019
PvuII	CAGCTG	1 cut(s)	1157
RsaI	GTAC	3 cut(s)	322, 1014, 1070
RsaNI	GTAC	3 cut(s)	321, 1013, 1069
RseI	CAYNNNNRTG	3 cut(s)	38, 226, 867
SacI	GAGCTC	1 cut(s)	737
SaqAI	TTAA	3 cut(s)	281, 795, 1040
SatI	GCNGC	4 cut(s)	414, 437, 469, 1107
Sau3AI	GATC	7 cut(s)	43, 393, 592, 646, 743, 835, 1198
Sau96I	GGNCC	3 cut(s)	91, 539, 1019
SchI	GAGTC	2 cut(s)	723, 967
ScrFI	CCNGG	1 cut(s)	719
SduI	GDGCHC	3 cut(s)	737, 874, 953
SinI	GGWCC	2 cut(s)	539, 1019
SmiMI	CAYNNNNRTG	3 cut(s)	38, 226, 867
SmlI	CTYRAG	2 cut(s)	560, 1111
SmoI	CTYRAG	2 cut(s)	560, 1111
SpeI	ACTAGT	1 cut(s)	182
Sse9I	AATT	5 cut(s)	277, 381, 426, 482, 571
SsiI	CCGC	3 cut(s)	413, 577, 1009
SspMI	CTAG	1 cut(s)	183
SstI	GAGCTC	1 cut(s)	737
StyD4I	CCNGG	1 cut(s)	717
StyI	CCWWGG	1 cut(s)	227
TaaI	ACNGT	2 cut(s)	621, 869
TaiI	ACGT	3 cut(s)	84, 711, 1074
TaqI	TCGA	3 cut(s)	211, 742, 785
TaqII	GACCGA	1 cut(s)	1068
TasI	AATT	5 cut(s)	277, 381, 426, 482, 571
TauI	GCSGC	1 cut(s)	416
Tru1I	TTAA	3 cut(s)	281, 795, 1040
Tru9I	TTAA	3 cut(s)	281, 795, 1040
TseFI	GTSAC	1 cut(s)	1160
TseI	GCWGC	3 cut(s)	436, 468, 1106
Tsp45I	GTSAC	1 cut(s)	1160
TspDTI	ATGAA	2 cut(s)	628, 650
TspGWI	ACGGA	2 cut(s)	502, 590
VneI	GTGCAC	2 cut(s)	870, 949
VpaK11BI	GGWCC	2 cut(s)	539, 1019
XagI	CCTNNNNNAGG	1 cut(s)	1178
XapI	RAATTY	1 cut(s)	277
XceI	RCATGY	2 cut(s)	262, 1061
XmnI	GAANNNNTTC	1 cut(s)	217
XspI	CTAG	1 cut(s)	183
Zsp2I	ATGCAT	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.