Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007616

Physical Location & Seq

Genomic Coordinates Forward (+)

10103111 .. 10106520

Gene Structure 3410 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG128300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGGTGAAGGTACATTTGGTCAGGTTTTGGAGTGCTGGGACAGAGAAAAAAAGGAAATGGTTGCCATAAAAATTGTTCGTGGGATCAAGAAATATCGTGAAGCAGCTATGATTGAAATTGAAATGCTGCAACAACTTGGTAAACATGATAAAGGTGGCAGCCGTTGTGTGCAATTACGGAACTGGTTTGACTATCGTAACCATATCTGTATTGTGTTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTCAAGAAAAACAATTACCGCTCATTTCCCATTGATCTCGTCCGTGAGATTGGCAGACAACTGTTGGAATGTGTAGCATTCATGCATGATCTCTCTCTTATTCATACCGACTTGAAGCCAGAGAACATACTTCTTGTTTCTCAGGATTACGTTAGAGTCCCGGATTATAATAAGAGCTCATCTCGATCACCCAAAGATAGCTCTTACTATAAAAGAGTACCAAAGTCGAGTGCTATTAAGGTGATTGATTTTGGTAGCACAACTTTTGAGCGTCAAGATCAGAACTATATTGTATCAACCCGTCATTACCGTGCACCAGAGGTTATTCTTGGAATGGGCTGGAGCTACCCTTGCGATGTATGGAGCATTGGTTGTATCTTAGTGGAGCTGTGCACGGGTGAGGCTTTGTTTCAGACTCATGAGAACTTGGAACACCTTGCCATGATGGAGCGGGTACTTGGTCCCCTGCCCCAGCATATATTAAAGAGAGCAGACCGACATGCTGACAAATACGTCAGGAGAGGTAGATTGGATTGGCCAGAAGGTGCTGCCTCAAGAGAGAGTATCAAGGCTGTTCAGAAGCTTGCTCGTCTTCAGAATCTTATAATGCAGCACGTAGACCATTCAGCTGGTGACCTTATCCACCTCTTGCAGGGGCTGCTGAAGTATGATCCTTCAGATAGACTTACAGCTCGTGAAGCCCTTAGGCATTCGTTTTTTACACGGGACAATCTTAGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046483 GO:0046777 GO:0071704 GO:0090304 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

330

Amino Acids

38.37

Weight (kDa)

9.04

Isoelectric Point (pI)

51.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 323	4.4e-49	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	1 - 233	6.6e-20	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24740 AT4G24740 AT4G24740 AT4G24740 AT4G24740 AT4G24740 AT4G24740 AT4G24740
fragaria_vesca	FvH4_5g06570 FvH4_5g06570 FvH4_5g06570 FvH4_5g06570
malus_domestica	MD06G1164200.v1.1 MD14G1169100.v1.1
prunus_persica	Prupe.5G163600_v2.0.a1 Prupe.5G163600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0192261
rosa_laevigata	RLG00000004381
rosa_multiflora	Rmu_co8508131.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263140
rosa_rugosa	Rorug07G0000300
rosa_samantha	Rh7AG124400 Rh7CG128300
rosa_wichuraiana	Rw7G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	417, 854
AasI	GACNNNNNNGTC	1 cut(s)	761
AccBSI	CCGCTC	2 cut(s)	270, 700
AccI	GTMKAC	1 cut(s)	867
AciI	CCGC	2 cut(s)	268, 700
AclWI	GGATC	2 cut(s)	92, 914
AcoI	YGGCCR	1 cut(s)	785
AcuI	CTGAAG	3 cut(s)	827, 909, 932
AfaI	GTAC	3 cut(s)	13, 468, 705
AfiI	CCNNNNNNNGG	1 cut(s)	901
AgsI	TTSAA	3 cut(s)	116, 122, 364
AjuI	GAANNNNNNNTTGG	1 cut(s)	32
Alw21I	GWGCWC	3 cut(s)	428, 565, 644
Alw44I	GTGCAC	2 cut(s)	561, 640
AlwI	GGATC	2 cut(s)	92, 914
AlwNI	CAGNNNCTG	1 cut(s)	907
AoxI	GGCC	1 cut(s)	785
ApaLI	GTGCAC	2 cut(s)	561, 640
ApeKI	GCWGC	6 cut(s)	104, 127, 159, 797, 859, 907
AspS9I	GGNCC	2 cut(s)	230, 710
AsuC2I	CCSGG	1 cut(s)	410
AsuHPI	GGTGA	5 cut(s)	17, 429, 502, 659, 893
AvaII	GGWCC	2 cut(s)	230, 710
AxyI	CCTNAGG	1 cut(s)	953
BaeGI	GKGCMC	2 cut(s)	565, 644
BalI	TGGCCA	1 cut(s)	787
BanII	GRGCYC	1 cut(s)	428
BauI	CACGAG	1 cut(s)	942
BbsI	GAAGAC	1 cut(s)	833
Bbv12I	GWGCWC	3 cut(s)	428, 565, 644
BbvI	GCAGC	6 cut(s)	114, 116, 171, 784, 871, 894
BccI	CCATC	1 cut(s)	688
BceAI	ACGGC	1 cut(s)	147
BcnI	CCSGG	1 cut(s)	410
BisI	GCNGC	6 cut(s)	105, 128, 160, 798, 860, 908
BlsI	GCNGC	6 cut(s)	106, 129, 161, 799, 861, 909
Bme1390I	CCNGG	1 cut(s)	410
Bme18I	GGWCC	2 cut(s)	230, 710
BmgT120I	GGNCC	2 cut(s)	230, 710
BmiI	GGNNCC	1 cut(s)	712
BmrFI	CCNGG	1 cut(s)	410
BpiI	GAAGAC	1 cut(s)	833
BplI	GAGNNNNNCTC	2 cut(s)	415, 447
BpmI	CTGGAG	1 cut(s)	610
BpuEI	CTTGAG	2 cut(s)	236, 787
BpuMI	CCSGG	1 cut(s)	410
BsaAI	YACGTR	1 cut(s)	865
BsaXI	ACNNNNNCTCC	2 cut(s)	604, 634
Bsc4I	CCNNNNNNNGG	1 cut(s)	901
Bse1I	ACTGG	1 cut(s)	188
Bse21I	CCTNAGG	1 cut(s)	953
BseLI	CCNNNNNNNGG	1 cut(s)	901
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	1 cut(s)	188
BseSI	GKGCMC	2 cut(s)	565, 644
BseXI	GCAGC	6 cut(s)	114, 116, 171, 784, 871, 894
BseYI	CCCAGC	2 cut(s)	36, 720
BshFI	GGCC	1 cut(s)	787
BsiHKAI	GWGCWC	3 cut(s)	428, 565, 644
BsiSI	CCGG	1 cut(s)	410
BslFI	GGGAC	4 cut(s)	53, 392, 696, 989
BslI	CCNNNNNNNGG	1 cut(s)	901
BsmFI	GGGAC	4 cut(s)	53, 392, 696, 989
BsmI	GAATGC	2 cut(s)	326, 958
BsnI	GGCC	1 cut(s)	787
Bsp1286I	GDGCHC	3 cut(s)	428, 565, 644
Bsp143I	GATC	6 cut(s)	84, 283, 337, 434, 526, 919
BspACI	CCGC	2 cut(s)	268, 700
BspANI	GGCC	1 cut(s)	787
BspCNI	CTCAG	1 cut(s)	403
BspHI	TCATGA	1 cut(s)	667
BspLI	GGNNCC	1 cut(s)	712
BspPI	GGATC	2 cut(s)	92, 914
BsrBI	CCGCTC	2 cut(s)	270, 700
BsrI	ACTGG	1 cut(s)	188
BssMI	GATC	6 cut(s)	84, 283, 337, 434, 526, 919
BssSI	CACGAG	1 cut(s)	942
Bst2BI	CACGAG	1 cut(s)	942
Bst4CI	ACNGT	2 cut(s)	312, 560
BstAPI	GCANNNNNTGC	1 cut(s)	907
BstBAI	YACGTR	1 cut(s)	865
BstC8I	GCNNGC	1 cut(s)	834
BstDEI	CTNAG	4 cut(s)	390, 628, 953, 983
BstEII	GGTNACC	1 cut(s)	881
BstENI	CCTNNNNNAGG	1 cut(s)	899
BstKTI	GATC	6 cut(s)	87, 286, 340, 437, 529, 922
BstMBI	GATC	6 cut(s)	84, 283, 337, 434, 526, 919
BstMWI	GCNNNNNNNGC	3 cut(s)	600, 907, 947
BstNSI	RCATGY	1 cut(s)	752
BstPI	GGTNACC	1 cut(s)	881
BstSCI	CCNGG	1 cut(s)	408
BstSLI	GKGCMC	2 cut(s)	565, 644
BstV1I	GCAGC	6 cut(s)	114, 116, 171, 784, 871, 894
BstV2I	GAAGAC	1 cut(s)	833
BstXI	CCANNNNNNTGG	1 cut(s)	878
Bsu36I	CCTNAGG	1 cut(s)	953
BsuRI	GGCC	1 cut(s)	787
BtgZI	GCGATG	1 cut(s)	618
Cac8I	GCNNGC	1 cut(s)	834
CaiI	CAGNNNCTG	1 cut(s)	907
CciI	TCATGA	1 cut(s)	667
Cfr13I	GGNCC	2 cut(s)	230, 710
CseI	GACGC	1 cut(s)	509
Csp6I	GTAC	3 cut(s)	12, 467, 704
CviAII	CATG	6 cut(s)	146, 331, 335, 668, 691, 749
CviQI	GTAC	3 cut(s)	12, 467, 704
DdeI	CTNAG	4 cut(s)	390, 628, 953, 983
DpnI	GATC	6 cut(s)	86, 285, 339, 436, 528, 921
DpnII	GATC	6 cut(s)	84, 283, 337, 434, 526, 919
DrdI	GACNNNNNNGTC	1 cut(s)	761
DseDI	GACNNNNNNGTC	1 cut(s)	761
EaeI	YGGCCR	1 cut(s)	785
Ecl136II	GAGCTC	1 cut(s)	426
Eco24I	GRGCYC	1 cut(s)	428
Eco47I	GGWCC	2 cut(s)	230, 710
Eco53kI	GAGCTC	1 cut(s)	426
Eco57I	CTGAAG	3 cut(s)	827, 909, 932
Eco81I	CCTNAGG	1 cut(s)	953
Eco91I	GGTNACC	1 cut(s)	881
EcoICRI	GAGCTC	1 cut(s)	426
EcoNI	CCTNNNNNAGG	1 cut(s)	899
EcoO65I	GGTNACC	1 cut(s)	881
EcoT22I	ATGCAT	1 cut(s)	336
EcoT38I	GRGCYC	1 cut(s)	428
FaeI	CATG	6 cut(s)	149, 334, 338, 671, 694, 752
FaqI	GGGAC	4 cut(s)	53, 392, 696, 989
FatI	CATG	6 cut(s)	145, 330, 334, 667, 690, 748
FauI	CCCGC	1 cut(s)	693
FblI	GTMKAC	1 cut(s)	867
Fnu4HI	GCNGC	6 cut(s)	105, 128, 160, 798, 860, 908
FriOI	GRGCYC	1 cut(s)	428
Fsp4HI	GCNGC	6 cut(s)	105, 128, 160, 798, 860, 908
GluI	GCNGC	6 cut(s)	105, 128, 160, 798, 860, 908
GsaI	CCCAGC	2 cut(s)	40, 724
GsuI	CTGGAG	1 cut(s)	610
HaeIII	GGCC	1 cut(s)	787
HapII	CCGG	1 cut(s)	410
HgaI	GACGC	1 cut(s)	509
Hin1II	CATG	6 cut(s)	149, 334, 338, 671, 694, 752
HindIII	AAGCTT	3 cut(s)	224, 235, 830
HinfI	GANTC	3 cut(s)	405, 664, 847
HpaII	CCGG	1 cut(s)	410
HphI	GGTGA	5 cut(s)	17, 429, 502, 659, 893
Hpy166II	GTNNAC	4 cut(s)	143, 563, 642, 868
Hpy188I	TCNGA	5 cut(s)	531, 663, 828, 846, 928
Hpy8I	GTNNAC	4 cut(s)	143, 563, 642, 868
HpyAV	CCTTC	2 cut(s)	785, 933
HpyCH4III	ACNGT	2 cut(s)	312, 560
HpyCH4IV	ACGT	3 cut(s)	399, 762, 864
HpyCH4V	TGCA	7 cut(s)	130, 172, 334, 563, 642, 859, 901
HpyF10VI	GCNNNNNNNGC	3 cut(s)	600, 907, 947
HpyF3I	CTNAG	4 cut(s)	390, 628, 953, 983
HpySE526I	ACGT	3 cut(s)	399, 762, 864
Hsp92II	CATG	6 cut(s)	149, 334, 338, 671, 694, 752
Kzo9I	GATC	6 cut(s)	84, 283, 337, 434, 526, 919
LmnI	GCTCC	4 cut(s)	591, 612, 634, 697
Lsp1109I	GCAGC	6 cut(s)	114, 116, 171, 784, 871, 894
MaeII	ACGT	3 cut(s)	399, 762, 864
MaeIII	GTNAC	2 cut(s)	197, 881
MalI	GATC	6 cut(s)	86, 285, 339, 436, 528, 921
MbiI	CCGCTC	2 cut(s)	270, 700
MboI	GATC	6 cut(s)	84, 283, 337, 434, 526, 919
MboII	GAAGA	1 cut(s)	833
MhlI	GDGCHC	3 cut(s)	428, 565, 644
MlsI	TGGCCA	1 cut(s)	787
MluCI	AATT	4 cut(s)	72, 117, 173, 262
MluNI	TGGCCA	1 cut(s)	787
MlyI	GAGTC	2 cut(s)	414, 658
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	5 cut(s)	562, 643, 764, 811, 905
Mox20I	TGGCCA	1 cut(s)	787
Mph1103I	ATGCAT	1 cut(s)	336
MscI	TGGCCA	1 cut(s)	787
MseI	TTAA	2 cut(s)	486, 731
MslI	CAYNNNNRTG	1 cut(s)	558
Msp20I	TGGCCA	1 cut(s)	787
MspA1I	CMGCKG	1 cut(s)	878
MspI	CCGG	1 cut(s)	410
MspR9I	CCNGG	1 cut(s)	410
Mva1269I	GAATGC	2 cut(s)	326, 958
MwoI	GCNNNNNNNGC	3 cut(s)	600, 907, 947
NciI	CCSGG	1 cut(s)	410
NdeII	GATC	6 cut(s)	84, 283, 337, 434, 526, 919
NlaIII	CATG	6 cut(s)	149, 334, 338, 671, 694, 752
NlaIV	GGNNCC	1 cut(s)	712
NmuCI	GTSAC	1 cut(s)	881
NsiI	ATGCAT	1 cut(s)	336
NspI	RCATGY	1 cut(s)	752
PagI	TCATGA	1 cut(s)	667
PctI	GAATGC	2 cut(s)	326, 958
PfeI	GAWTC	1 cut(s)	847
PfoI	TCCNGGA	1 cut(s)	408
PkrI	GCNGC	6 cut(s)	106, 129, 161, 799, 861, 909
PleI	GAGTC	2 cut(s)	413, 658
PpsI	GAGTC	2 cut(s)	413, 658
Ppu21I	YACGTR	1 cut(s)	865
PsiI	TTATAA	2 cut(s)	417, 854
Psp124BI	GAGCTC	1 cut(s)	428
PspEI	GGTNACC	1 cut(s)	881
PspFI	CCCAGC	2 cut(s)	36, 720
PspN4I	GGNNCC	1 cut(s)	712
PspPI	GGNCC	2 cut(s)	230, 710
PstNI	CAGNNNCTG	1 cut(s)	907
PvuII	CAGCTG	1 cut(s)	878
RsaI	GTAC	3 cut(s)	13, 468, 705
RsaNI	GTAC	3 cut(s)	12, 467, 704
RseI	CAYNNNNRTG	1 cut(s)	558
SacI	GAGCTC	1 cut(s)	428
SaqAI	TTAA	2 cut(s)	486, 731
SatI	GCNGC	6 cut(s)	105, 128, 160, 798, 860, 908
Sau3AI	GATC	6 cut(s)	84, 283, 337, 434, 526, 919
Sau96I	GGNCC	2 cut(s)	230, 710
SchI	GAGTC	2 cut(s)	414, 658
ScrFI	CCNGG	1 cut(s)	410
SduI	GDGCHC	3 cut(s)	428, 565, 644
SinI	GGWCC	2 cut(s)	230, 710
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	2 cut(s)	251, 802
SmoI	CTYRAG	2 cut(s)	251, 802
Sse9I	AATT	4 cut(s)	72, 117, 173, 262
SsiI	CCGC	2 cut(s)	268, 700
SstI	GAGCTC	1 cut(s)	428
StyD4I	CCNGG	1 cut(s)	408
TaaI	ACNGT	2 cut(s)	312, 560
TaiI	ACGT	3 cut(s)	402, 765, 867
TaqI	TCGA	2 cut(s)	433, 476
TaqII	GACCGA	1 cut(s)	759
TasI	AATT	4 cut(s)	72, 117, 173, 262
TfiI	GAWTC	1 cut(s)	847
Tru1I	TTAA	2 cut(s)	486, 731
Tru9I	TTAA	2 cut(s)	486, 731
TseFI	GTSAC	1 cut(s)	881
TseI	GCWGC	6 cut(s)	104, 127, 159, 797, 859, 907
Tsp45I	GTSAC	1 cut(s)	881
TspDTI	ATGAA	2 cut(s)	319, 341
TspGWI	ACGGA	2 cut(s)	193, 281
VneI	GTGCAC	2 cut(s)	561, 640
VpaK11BI	GGWCC	2 cut(s)	230, 710
XagI	CCTNNNNNAGG	1 cut(s)	899
XceI	RCATGY	1 cut(s)	752
XmiI	GTMKAC	1 cut(s)	867
Zsp2I	ATGCAT	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.