Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8508131.1

Orthogroup ID

OG0007616

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2386

Gene Structure 2386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8508131.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

gctcaggtaggaatgttttgtggacaagaggttgggaatatgacaagctttgctcctttgatggcaccctcactctacactactagttccctatttgataaggaagtagctcgaaatggttcacccccatggagagaagatgacaaagatgggcattacatgttttcgcttggagaaaatttaacagctcgctacaaaatccaaagcaaaatgggtgaaggtacatttggtcaggttttggagtgctgggacagagaaaaaaaggaaatggttgccataaaaattgttcgtgggatcaagaaatatcgtgaagcagctatgattgaaattgaaatgctgcaacaacttggtaaacatgataaaggtggcagccgttgtgtgcaattacggaactggtttgactatcgtaaccatatctgtattgtgtttgagaagcttggaccaagcttatacgattttctcaagaaaaacaattaccgctcatttcccattgatctcgtccgtgagattggcagacaactgttggaatgtgtagcattcatgcatgatctctctcttattcataccgacttgaagccagagaacatacttcttgtttctcaggattacgttagagtcccggattataataagagctcatctcgatcacccaaagatagctcttactataaaagagtaccaaagtcgagtgctattaaggtgattgattttggtagcacaacttatgagcgtcaagatcagaactatattgtatcaacccgtcattaccgtgcaccagaggttattcttggaatgggctggagctacccttgcgatgtatggagcattggttgtatcttagtggagttgtgcacgggtgaggctttgtttcagactcatgagaacttggaacaccttgccatgatggagcgggtacttggtcccctgccccagcatatattaaagagagcagaccgacatgctgacaagtacgtcaggagaggtagattggattggccagaaggtgctgcctcaagagagagtatcaaggctgttcagaagcttgctcgtcttcagaatcttataatgcagcacgtagaccattcagctggtgaccttatccacctcttgcaggggctgctgaagtatgatccttcagatagacttacagctcgtgaagcccttaggcattcgttttttacacgggacaatcttaggagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046483 GO:0046777 GO:0071704 GO:0090304 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

400

Amino Acids

46.18

Weight (kDa)

8.85

Isoelectric Point (pI)

50.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24740 AT4G24740 AT4G24740 AT4G24740 AT4G24740 AT4G24740 AT4G24740 AT4G24740
fragaria_vesca	FvH4_5g06570 FvH4_5g06570 FvH4_5g06570 FvH4_5g06570
malus_domestica	MD06G1164200.v1.1 MD14G1169100.v1.1
prunus_persica	Prupe.5G163600_v2.0.a1 Prupe.5G163600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0192261
rosa_laevigata	RLG00000004381
rosa_multiflora	Rmu_co8508131.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263140
rosa_rugosa	Rorug07G0000300
rosa_samantha	Rh7AG124400 Rh7CG128300
rosa_wichuraiana	Rw7G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	627, 1064
AasI	GACNNNNNNGTC	1 cut(s)	971
AccB1I	GGYRCC	1 cut(s)	64
AccBSI	CCGCTC	2 cut(s)	480, 910
AccI	GTMKAC	1 cut(s)	1077
AciI	CCGC	2 cut(s)	478, 910
AclWI	GGATC	2 cut(s)	302, 1124
AcoI	YGGCCR	1 cut(s)	995
AcsI	RAATTY	1 cut(s)	178
AcuI	CTGAAG	3 cut(s)	1037, 1119, 1142
AfaI	GTAC	4 cut(s)	223, 678, 915, 971
AfiI	CCNNNNNNNGG	1 cut(s)	1111
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	3 cut(s)	326, 332, 574
AhlI	ACTAGT	1 cut(s)	83
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
Alw21I	GWGCWC	3 cut(s)	638, 775, 854
Alw44I	GTGCAC	2 cut(s)	771, 850
AlwI	GGATC	2 cut(s)	302, 1124
AlwNI	CAGNNNCTG	1 cut(s)	1117
AoxI	GGCC	1 cut(s)	995
ApaLI	GTGCAC	2 cut(s)	771, 850
ApeKI	GCWGC	6 cut(s)	314, 337, 369, 1007, 1069, 1117
ApoI	RAATTY	1 cut(s)	178
Asp700I	GAANNNNTTC	1 cut(s)	118
AspS9I	GGNCC	2 cut(s)	440, 920
AsuC2I	CCSGG	1 cut(s)	620
AsuHPI	GGTGA	6 cut(s)	114, 227, 639, 712, 869, 1103
AvaII	GGWCC	2 cut(s)	440, 920
AxyI	CCTNAGG	1 cut(s)	1163
BaeGI	GKGCMC	2 cut(s)	775, 854
BalI	TGGCCA	1 cut(s)	997
BanI	GGYRCC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	638
BauI	CACGAG	1 cut(s)	1152
BbsI	GAAGAC	1 cut(s)	1043
Bbv12I	GWGCWC	3 cut(s)	638, 775, 854
BbvI	GCAGC	6 cut(s)	324, 326, 381, 994, 1081, 1104
BccI	CCATC	3 cut(s)	55, 143, 898
BceAI	ACGGC	1 cut(s)	357
BcnI	CCSGG	1 cut(s)	620
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	1 cut(s)	84
BisI	GCNGC	6 cut(s)	315, 338, 370, 1008, 1070, 1118
BlsI	GCNGC	6 cut(s)	316, 339, 371, 1009, 1071, 1119
Bme1390I	CCNGG	1 cut(s)	620
Bme18I	GGWCC	2 cut(s)	440, 920
BmgT120I	GGNCC	2 cut(s)	440, 920
BmiI	GGNNCC	2 cut(s)	66, 922
BmrFI	CCNGG	1 cut(s)	620
BpiI	GAAGAC	1 cut(s)	1043
BplI	GAGNNNNNCTC	2 cut(s)	625, 657
BpmI	CTGGAG	1 cut(s)	820
Bpu10I	CCTNAGC	1 cut(s)	3
BpuEI	CTTGAG	2 cut(s)	446, 997
BpuMI	CCSGG	1 cut(s)	620
BsaAI	YACGTR	1 cut(s)	1075
BsaJI	CCNNGG	1 cut(s)	128
BsaXI	ACNNNNNCTCC	2 cut(s)	814, 844
Bsc4I	CCNNNNNNNGG	1 cut(s)	1111
Bse1I	ACTGG	1 cut(s)	398
Bse21I	CCTNAGG	1 cut(s)	1163
BseDI	CCNNGG	1 cut(s)	128
BseLI	CCNNNNNNNGG	1 cut(s)	1111
BseMII	CTCAG	2 cut(s)	17, 614
BseNI	ACTGG	1 cut(s)	398
BseSI	GKGCMC	2 cut(s)	775, 854
BseXI	GCAGC	6 cut(s)	324, 326, 381, 994, 1081, 1104
BseYI	CCCAGC	2 cut(s)	246, 930
BshFI	GGCC	1 cut(s)	997
BshNI	GGYRCC	1 cut(s)	64
BsiHKAI	GWGCWC	3 cut(s)	638, 775, 854
BsiSI	CCGG	1 cut(s)	620
BslFI	GGGAC	4 cut(s)	263, 602, 906, 1199
BslI	CCNNNNNNNGG	1 cut(s)	1111
BsmFI	GGGAC	4 cut(s)	263, 602, 906, 1199
BsmI	GAATGC	2 cut(s)	536, 1168
BsnI	GGCC	1 cut(s)	997
Bsp1286I	GDGCHC	3 cut(s)	638, 775, 854
Bsp143I	GATC	6 cut(s)	294, 493, 547, 644, 736, 1129
Bsp19I	CCATGG	1 cut(s)	128
BspACI	CCGC	2 cut(s)	478, 910
BspANI	GGCC	1 cut(s)	997
BspCNI	CTCAG	2 cut(s)	16, 613
BspHI	TCATGA	1 cut(s)	877
BspLI	GGNNCC	2 cut(s)	66, 922
BspPI	GGATC	2 cut(s)	302, 1124
BspT107I	GGYRCC	1 cut(s)	64
BsrBI	CCGCTC	2 cut(s)	480, 910
BsrI	ACTGG	1 cut(s)	398
BssECI	CCNNGG	1 cut(s)	128
BssMI	GATC	6 cut(s)	294, 493, 547, 644, 736, 1129
BssSI	CACGAG	1 cut(s)	1152
BssT1I	CCWWGG	1 cut(s)	128
Bst2BI	CACGAG	1 cut(s)	1152
Bst4CI	ACNGT	2 cut(s)	522, 770
BstAPI	GCANNNNNTGC	1 cut(s)	1117
BstBAI	YACGTR	1 cut(s)	1075
BstC8I	GCNNGC	2 cut(s)	190, 1044
BstDEI	CTNAG	5 cut(s)	3, 600, 838, 1163, 1193
BstDSI	CCRYGG	1 cut(s)	128
BstEII	GGTNACC	1 cut(s)	1091
BstENI	CCTNNNNNAGG	1 cut(s)	1109
BstKTI	GATC	6 cut(s)	297, 496, 550, 647, 739, 1132
BstMBI	GATC	6 cut(s)	294, 493, 547, 644, 736, 1129
BstMWI	GCNNNNNNNGC	3 cut(s)	810, 1117, 1157
BstNSI	RCATGY	2 cut(s)	163, 962
BstPI	GGTNACC	1 cut(s)	1091
BstSCI	CCNGG	1 cut(s)	618
BstSLI	GKGCMC	2 cut(s)	775, 854
BstV1I	GCAGC	6 cut(s)	324, 326, 381, 994, 1081, 1104
BstV2I	GAAGAC	1 cut(s)	1043
BstXI	CCANNNNNNTGG	1 cut(s)	1088
Bsu36I	CCTNAGG	1 cut(s)	1163
BsuRI	GGCC	1 cut(s)	997
BtgI	CCRYGG	1 cut(s)	128
BtgZI	GCGATG	1 cut(s)	828
Cac8I	GCNNGC	2 cut(s)	190, 1044
CaiI	CAGNNNCTG	1 cut(s)	1117
CciI	TCATGA	1 cut(s)	877
Cfr13I	GGNCC	2 cut(s)	440, 920
CseI	GACGC	1 cut(s)	719
Csp6I	GTAC	4 cut(s)	222, 677, 914, 970
CviAII	CATG	8 cut(s)	129, 160, 356, 541, 545, 878, 901, 959
CviQI	GTAC	4 cut(s)	222, 677, 914, 970
DdeI	CTNAG	5 cut(s)	3, 600, 838, 1163, 1193
DpnI	GATC	6 cut(s)	296, 495, 549, 646, 738, 1131
DpnII	GATC	6 cut(s)	294, 493, 547, 644, 736, 1129
DrdI	GACNNNNNNGTC	1 cut(s)	971
DseDI	GACNNNNNNGTC	1 cut(s)	971
EaeI	YGGCCR	1 cut(s)	995
Ecl136II	GAGCTC	1 cut(s)	636
Eco130I	CCWWGG	1 cut(s)	128
Eco24I	GRGCYC	1 cut(s)	638
Eco47I	GGWCC	2 cut(s)	440, 920
Eco53kI	GAGCTC	1 cut(s)	636
Eco57I	CTGAAG	3 cut(s)	1037, 1119, 1142
Eco81I	CCTNAGG	1 cut(s)	1163
Eco91I	GGTNACC	1 cut(s)	1091
EcoICRI	GAGCTC	1 cut(s)	636
EcoNI	CCTNNNNNAGG	1 cut(s)	1109
EcoO65I	GGTNACC	1 cut(s)	1091
EcoT14I	CCWWGG	1 cut(s)	128
EcoT22I	ATGCAT	1 cut(s)	546
EcoT38I	GRGCYC	1 cut(s)	638
ErhI	CCWWGG	1 cut(s)	128
FaeI	CATG	8 cut(s)	132, 163, 359, 544, 548, 881, 904, 962
FaqI	GGGAC	4 cut(s)	263, 602, 906, 1199
FatI	CATG	8 cut(s)	128, 159, 355, 540, 544, 877, 900, 958
FauI	CCCGC	1 cut(s)	903
FblI	GTMKAC	1 cut(s)	1077
Fnu4HI	GCNGC	6 cut(s)	315, 338, 370, 1008, 1070, 1118
FriOI	GRGCYC	1 cut(s)	638
Fsp4HI	GCNGC	6 cut(s)	315, 338, 370, 1008, 1070, 1118
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	6 cut(s)	315, 338, 370, 1008, 1070, 1118
GsaI	CCCAGC	2 cut(s)	250, 934
GsuI	CTGGAG	1 cut(s)	820
HaeIII	GGCC	1 cut(s)	997
HapII	CCGG	1 cut(s)	620
HgaI	GACGC	1 cut(s)	719
Hin1II	CATG	8 cut(s)	132, 163, 359, 544, 548, 881, 904, 962
HindIII	AAGCTT	4 cut(s)	46, 434, 445, 1040
HinfI	GANTC	3 cut(s)	615, 874, 1057
HpaII	CCGG	1 cut(s)	620
HphI	GGTGA	6 cut(s)	114, 227, 639, 712, 869, 1103
Hpy166II	GTNNAC	6 cut(s)	23, 122, 353, 773, 852, 1078
Hpy188I	TCNGA	5 cut(s)	741, 873, 1038, 1056, 1138
Hpy8I	GTNNAC	6 cut(s)	23, 122, 353, 773, 852, 1078
HpyAV	CCTTC	3 cut(s)	212, 995, 1143
HpyCH4III	ACNGT	2 cut(s)	522, 770
HpyCH4IV	ACGT	3 cut(s)	609, 972, 1074
HpyCH4V	TGCA	7 cut(s)	340, 382, 544, 773, 852, 1069, 1111
HpyF10VI	GCNNNNNNNGC	3 cut(s)	810, 1117, 1157
HpyF3I	CTNAG	5 cut(s)	3, 600, 838, 1163, 1193
HpySE526I	ACGT	3 cut(s)	609, 972, 1074
Hsp92II	CATG	8 cut(s)	132, 163, 359, 544, 548, 881, 904, 962
Kzo9I	GATC	6 cut(s)	294, 493, 547, 644, 736, 1129
LmnI	GCTCC	4 cut(s)	58, 801, 822, 907
Lsp1109I	GCAGC	6 cut(s)	324, 326, 381, 994, 1081, 1104
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	3 cut(s)	609, 972, 1074
MaeIII	GTNAC	2 cut(s)	407, 1091
MalI	GATC	6 cut(s)	296, 495, 549, 646, 738, 1131
MbiI	CCGCTC	2 cut(s)	480, 910
MboI	GATC	6 cut(s)	294, 493, 547, 644, 736, 1129
MboII	GAAGA	2 cut(s)	149, 1043
MhlI	GDGCHC	3 cut(s)	638, 775, 854
MlsI	TGGCCA	1 cut(s)	997
MluCI	AATT	5 cut(s)	178, 282, 327, 383, 472
MluNI	TGGCCA	1 cut(s)	997
MlyI	GAGTC	2 cut(s)	624, 868
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	7 cut(s)	22, 79, 772, 853, 974, 1021, 1115
Mox20I	TGGCCA	1 cut(s)	997
Mph1103I	ATGCAT	1 cut(s)	546
MroXI	GAANNNNTTC	1 cut(s)	118
MscI	TGGCCA	1 cut(s)	997
MseI	TTAA	3 cut(s)	182, 696, 941
MslI	CAYNNNNRTG	2 cut(s)	127, 768
Msp20I	TGGCCA	1 cut(s)	997
MspA1I	CMGCKG	1 cut(s)	1088
MspI	CCGG	1 cut(s)	620
MspR9I	CCNGG	1 cut(s)	620
Mva1269I	GAATGC	2 cut(s)	536, 1168
MwoI	GCNNNNNNNGC	3 cut(s)	810, 1117, 1157
NciI	CCSGG	1 cut(s)	620
NcoI	CCATGG	1 cut(s)	128
NdeII	GATC	6 cut(s)	294, 493, 547, 644, 736, 1129
NlaIII	CATG	8 cut(s)	132, 163, 359, 544, 548, 881, 904, 962
NlaIV	GGNNCC	2 cut(s)	66, 922
NmuCI	GTSAC	1 cut(s)	1091
NsiI	ATGCAT	1 cut(s)	546
NspI	RCATGY	2 cut(s)	163, 962
PagI	TCATGA	1 cut(s)	877
PciI	ACATGT	1 cut(s)	159
PctI	GAATGC	2 cut(s)	536, 1168
PdmI	GAANNNNTTC	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	1057
PfoI	TCCNGGA	1 cut(s)	618
PkrI	GCNGC	6 cut(s)	316, 339, 371, 1009, 1071, 1119
PleI	GAGTC	2 cut(s)	623, 868
PpsI	GAGTC	2 cut(s)	623, 868
Ppu21I	YACGTR	1 cut(s)	1075
PscI	ACATGT	1 cut(s)	159
PsiI	TTATAA	2 cut(s)	627, 1064
Psp124BI	GAGCTC	1 cut(s)	638
PspEI	GGTNACC	1 cut(s)	1091
PspFI	CCCAGC	2 cut(s)	246, 930
PspN4I	GGNNCC	2 cut(s)	66, 922
PspPI	GGNCC	2 cut(s)	440, 920
PstNI	CAGNNNCTG	1 cut(s)	1117
PvuII	CAGCTG	1 cut(s)	1088
RsaI	GTAC	4 cut(s)	223, 678, 915, 971
RsaNI	GTAC	4 cut(s)	222, 677, 914, 970
RseI	CAYNNNNRTG	2 cut(s)	127, 768
SacI	GAGCTC	1 cut(s)	638
SaqAI	TTAA	3 cut(s)	182, 696, 941
SatI	GCNGC	6 cut(s)	315, 338, 370, 1008, 1070, 1118
Sau3AI	GATC	6 cut(s)	294, 493, 547, 644, 736, 1129
Sau96I	GGNCC	2 cut(s)	440, 920
SchI	GAGTC	2 cut(s)	624, 868
ScrFI	CCNGG	1 cut(s)	620
SduI	GDGCHC	3 cut(s)	638, 775, 854
SinI	GGWCC	2 cut(s)	440, 920
SmiMI	CAYNNNNRTG	2 cut(s)	127, 768
SmlI	CTYRAG	2 cut(s)	461, 1012
SmoI	CTYRAG	2 cut(s)	461, 1012
SpeI	ACTAGT	1 cut(s)	83
Sse9I	AATT	5 cut(s)	178, 282, 327, 383, 472
SsiI	CCGC	2 cut(s)	478, 910
SspMI	CTAG	1 cut(s)	84
SstI	GAGCTC	1 cut(s)	638
StyD4I	CCNGG	1 cut(s)	618
StyI	CCWWGG	1 cut(s)	128
TaaI	ACNGT	2 cut(s)	522, 770
TaiI	ACGT	3 cut(s)	612, 975, 1077
TaqI	TCGA	3 cut(s)	112, 643, 686
TaqII	GACCGA	1 cut(s)	969
TasI	AATT	5 cut(s)	178, 282, 327, 383, 472
TfiI	GAWTC	1 cut(s)	1057
Tru1I	TTAA	3 cut(s)	182, 696, 941
Tru9I	TTAA	3 cut(s)	182, 696, 941
TseFI	GTSAC	1 cut(s)	1091
TseI	GCWGC	6 cut(s)	314, 337, 369, 1007, 1069, 1117
Tsp45I	GTSAC	1 cut(s)	1091
TspDTI	ATGAA	2 cut(s)	529, 551
TspGWI	ACGGA	2 cut(s)	403, 491
VneI	GTGCAC	2 cut(s)	771, 850
VpaK11BI	GGWCC	2 cut(s)	440, 920
XagI	CCTNNNNNAGG	1 cut(s)	1109
XapI	RAATTY	1 cut(s)	178
XceI	RCATGY	2 cut(s)	163, 962
XmiI	GTMKAC	1 cut(s)	1077
XmnI	GAANNNNTTC	1 cut(s)	118
XspI	CTAG	1 cut(s)	84
Zsp2I	ATGCAT	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.