FvH4_5g06640

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016330
Physical Location & Seq
Forward (+)
3929351 .. 3932122
2772 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g06640.t2

Sequence Viewer

Length: 1707 bp
ATGATCAGATCAGCAACGGTCACCAGAAACCACCCAAACAACAAAGCCGACGTCGCCGCCGCGCTTCTAAAACCCTGCTCCTCCCTCCACCACCTGAAACAAATCCACGCCCACATCCTCCGCTCCAATCTCCACCCCAACGCCTCCTTATCCTCCACTCTCATCTCCCTCTACGCCTCCCTCTCCTCCTCACCTAACCACACCCACCGCGTCTTCACCTCTTTCCCCAACCCAAACCTCTCTCTCTTCAACCACGCCATCAGAGCCTTCTCCAAGACCCCATCACTCTCTTCCCACGCCACGGCGCTGTACCGCCAAATGGTTCGGGTCGGGATCCGGCCCGATAACTATACCTATCCTTTCGTTCTGAATTCCTGCGCCGCGAGGGGTGATGTCTGTGGTGGGGTGGAGGTGCATGGGAGGGTTGTTAAGACCGGGTTTGGGGTTTGCGTGCCGGTTTCGAATGCGTTGATTGACATGTATGGGAAATGCGGGGGGTTGGGGGATGCACGGAAAGTGTTTGATGAGATGACTGAAAGAGACGTGGTTTCGTACAACGCGGTTTTGGGGGCGCACGCGAGAGGCGGGGCGGGGATGGAGATTGCGGCGGGTTTGTTTGAGGGGATGCAGGGGAGGAATGCTATTTCTTGGAATGCGATGATTGTGGGGTATGTGAATAGTGGGGATGTGGACTCGGCGAGGGATGTGTTTGATAGGATGCCGGAGAGGGATGGTGTATCGTGGACTACAATGCTGGTGGGGTATACTAAGAATGGGTTTATGGATAGGGCTAGGGGACTGTTTGATGAAATGCGTGAGAGGAGTTTGATTTGTTGGACGGCAATGATATCAGGGTACTCGCAAAGTGGGAGGGCGAGTGAAGCGCTTTCTGTTTTCCGGAGGATGGAGAAATCAGGGGTAAAGCCGGATGAGTTTACTATGACGGCAGTGATTTCTGCATTGGCGCAGTTGGGGCGTTCTGATCTGGCTGATTGGATTGGATTGTATGTGGAGAGAGAAGGCATAGAGCAGAATGAGCAAGTGCTCACTGCACTGGTTGACATGCATGCCAAGTGTGGGAATGTGGAAGAGGCTTGTCGTGTTTTTGAGAAGATACCTCGGAAGGATGTCTTCTCTTACAGTGCAATAATCACAGGGCTTGCTTCTCATGGTCATGGGATTAAAGCGCTTGAGATCTTCCTGAGGATGCTGGCAGAGAATATCAAACCCGATCACATCACGTTTGTTGGGGTATTGACTGCCTGTGGACATGCAGGCCTCGTGGAAGATGGAATGACGTATTGGGAAAGCATGGTTAAAGATTACGATATTCAGCCTCGTGCAGATCACTATGCTTGCGTGGTTGATATGCTGGGACGTGCCGGGAAGCTTAATGAGGCACATAGTTTAGTCCAGGGAATGCCTATGGGTCCACAGCCTGGAGCATTGGGAGCTTTGCTTGCAGCATGTAGAACATACGGAAATGTAGAGATTGCTGAAAGTGTTGCTGAGAAGCTCTTCAGGTTAGAGCCTGAGAATACGGGAAATTATATGCTACTTTCCAGTATCTACGCATCAAAAGAGCAATGGGATGAAGCTAGAAAAGTGCGGGAAGCAATGAACAAGAAAAGTGGAATTAAGCTTCCTGGCTTTAGCTGGGTTGAAATTAGCAAAGGCCATTCAACTCGATTGAAGAACCAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

569

Amino Acids

62.26

Weight (kDa)

8.2

Isoelectric Point (pI)

32.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 215 - 243 9.3e-07 PPR repeat
PPR PF01535 246 - 275 7e-08 PPR repeat
PPR_2 PF13041 276 - 322 8.6e-13 PPR repeat family
PPR PF01535 278 - 307 3.5e-09 PPR repeat
PPR_2 PF13041 375 - 423 9.6e-08 PPR repeat family
E_motif PF20431 493 - 555 1.7e-16 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016330)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06640 FvH4_5g06640 FvH4_5g06640
malus_domestica MD06G1162200.v1.1 MD14G1167900.v1.1
prunus_persica Prupe.5G162800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0192051
rosa_laevigata RLG00000004405
rosa_multiflora Rmu_ssc0000421.1_g000037
rosa_roxburghii Rroxscaffold_3G00263330
rosa_rugosa Rorug06G0512800.1
rosa_samantha Rh7BG124700 Rh7CG127400 Rh7DG126200
rosa_wichuraiana Rw7G010480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 54
AccB7I CCANNNNNTGG 1 cut(s) 1439
AccBSI CCGCTC 1 cut(s) 123
AccI GTMKAC 1 cut(s) 764
AccII CGCG 5 cut(s) 62, 210, 383, 560, 578
AccIII TCCGGA 1 cut(s) 897
AclWI GGATC 2 cut(s) 328, 341
AcsI RAATTY 2 cut(s) 370, 1701
AcuI CTGAAG 1 cut(s) 1504
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 3 cut(s) 311, 554, 857
AfeI AGCGCT 2 cut(s) 885, 1188
AfiI CCNNNNNNNGG 6 cut(s) 301, 319, 441, 904, 1077, 1439
AflIII ACRYGT 1 cut(s) 477
AgsI TTSAA 4 cut(s) 250, 1664, 1683, 1693
AjiI CACGTC 2 cut(s) 544, 1379
AjnI CCWGG 3 cut(s) 1413, 1438, 1645
AjuI GAANNNNNNNTTGG 2 cut(s) 1285, 1317
AluBI AGCT 6 cut(s) 1390, 1454, 1516, 1598, 1642, 1656
AluI AGCT 6 cut(s) 1390, 1454, 1516, 1598, 1642, 1656
Alw21I GWGCWC 1 cut(s) 1047
Alw26I GTCTC 1 cut(s) 534
AlwI GGATC 2 cut(s) 328, 341
Aor13HI TCCGGA 1 cut(s) 897
Aor51HI AGCGCT 2 cut(s) 885, 1188
AoxI GGCC 3 cut(s) 338, 1276, 1675
ApeKI GCWGC 1 cut(s) 1463
ApoI RAATTY 2 cut(s) 370, 1701
ArsI GACNNNNNNTTYG 2 cut(s) 36, 68
Asp700I GAANNNNTTC 1 cut(s) 1517
AspLEI GCGC 7 cut(s) 64, 307, 380, 574, 886, 967, 1189
AspS9I GGNCC 2 cut(s) 339, 1430
AsuC2I CCSGG 2 cut(s) 436, 1384
AsuHPI GGTGA 4 cut(s) 13, 183, 208, 401
AsuII TTCGAA 1 cut(s) 461
AvaII GGWCC 1 cut(s) 1430
AxyI CCTNAGG 1 cut(s) 1202
BamHI GGATCC 1 cut(s) 333
BauI CACGAG 2 cut(s) 1280, 1338
BbsI GAAGAC 2 cut(s) 205, 1123
Bbv12I GWGCWC 1 cut(s) 1047
BbvI GCAGC 1 cut(s) 1475
BccI CCATC 6 cut(s) 266, 289, 589, 725, 898, 1283
BceAI ACGGC 3 cut(s) 318, 855, 960
BciT130I CCWGG 3 cut(s) 1415, 1440, 1647
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 2 cut(s) 436, 1384
BcoDI GTCTC 1 cut(s) 534
BfaI CTAG 2 cut(s) 792, 1599
BfoI RGCGCY 3 cut(s) 308, 887, 1190
BglII AGATCT 1 cut(s) 1194
BisI GCNGC 5 cut(s) 57, 60, 381, 606, 1464
BlsI GCNGC 5 cut(s) 58, 61, 382, 607, 1465
Bme1390I CCNGG 5 cut(s) 436, 1384, 1415, 1440, 1647
Bme18I GGWCC 1 cut(s) 1430
BmgBI CACGTC 2 cut(s) 544, 1379
BmgT120I GGNCC 2 cut(s) 339, 1430
BmiI GGNNCC 2 cut(s) 335, 1431
BmrFI CCNGG 5 cut(s) 436, 1384, 1415, 1440, 1647
BmsI GCATC 5 cut(s) 496, 615, 708, 1197, 1583
BpiI GAAGAC 2 cut(s) 205, 1123
BpmI CTGGAG 1 cut(s) 1461
Bpu14I TTCGAA 1 cut(s) 461
BpuEI CTTGAG 1 cut(s) 1211
BpuMI CCSGG 2 cut(s) 436, 1384
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 3 cut(s) 300, 1118, 1414
BsaWI WCCGGW 1 cut(s) 897
BsaXI ACNNNNNCTCC 2 cut(s) 862, 892
Bsc4I CCNNNNNNNGG 6 cut(s) 301, 319, 441, 904, 1077, 1439
Bse118I RCCGGY 1 cut(s) 454
Bse1I ACTGG 2 cut(s) 1059, 1563
Bse21I CCTNAGG 1 cut(s) 1202
Bse3DI GCAATG 3 cut(s) 849, 1592, 1623
BseAI TCCGGA 1 cut(s) 897
BseBI CCWGG 3 cut(s) 1415, 1440, 1647
BseDI CCNNGG 3 cut(s) 300, 1118, 1414
BseLI CCNNNNNNNGG 6 cut(s) 301, 319, 441, 904, 1077, 1439
BseMI GCAATG 3 cut(s) 849, 1592, 1623
BseMII CTCAG 3 cut(s) 1193, 1500, 1524
BseNI ACTGG 2 cut(s) 1059, 1563
BseRI GAGGAG 4 cut(s) 70, 175, 178, 835
BseXI GCAGC 1 cut(s) 1475
BseYI CCCAGC 2 cut(s) 1372, 1656
BsgI GTGCAG 2 cut(s) 1035, 1362
Bsh1236I CGCG 5 cut(s) 62, 210, 383, 560, 578
BshFI GGCC 3 cut(s) 340, 1278, 1677
BsiHKAI GWGCWC 1 cut(s) 1047
BsiSI CCGG 7 cut(s) 337, 435, 455, 722, 898, 926, 1383
BslFI GGGAC 2 cut(s) 810, 1389
BslI CCNNNNNNNGG 6 cut(s) 301, 319, 441, 904, 1077, 1439
BsmAI GTCTC 1 cut(s) 534
BsmBI CGTCTC 1 cut(s) 534
BsmFI GGGAC 2 cut(s) 810, 1389
BsmI GAATGC 4 cut(s) 469, 643, 658, 1425
BsnI GGCC 3 cut(s) 340, 1278, 1677
Bsp119I TTCGAA 1 cut(s) 461
Bsp1286I GDGCHC 1 cut(s) 1047
Bsp13I TCCGGA 1 cut(s) 897
Bsp143I GATC 7 cut(s) 3, 8, 333, 982, 1194, 1231, 1345
BspANI GGCC 3 cut(s) 340, 1278, 1677
BspCNI CTCAG 3 cut(s) 1194, 1501, 1525
BspEI TCCGGA 1 cut(s) 897
BspFNI CGCG 5 cut(s) 62, 210, 383, 560, 578
BspLI GGNNCC 2 cut(s) 335, 1431
BspPI GGATC 2 cut(s) 328, 341
BspQI GCTCTTC 1 cut(s) 1523
BspT104I TTCGAA 1 cut(s) 461
BsrBI CCGCTC 1 cut(s) 123
BsrDI GCAATG 3 cut(s) 849, 1592, 1623
BsrFI RCCGGY 1 cut(s) 454
BsrI ACTGG 2 cut(s) 1059, 1563
BssAI RCCGGY 1 cut(s) 454
BssECI CCNNGG 3 cut(s) 300, 1118, 1414
BssMI GATC 7 cut(s) 3, 8, 333, 982, 1194, 1231, 1345
BssNAI GTATAC 1 cut(s) 765
BssNI GRCGYC 1 cut(s) 51
BssSI CACGAG 2 cut(s) 1280, 1338
Bst1107I GTATAC 1 cut(s) 765
Bst2BI CACGAG 2 cut(s) 1280, 1338
Bst2UI CCWGG 3 cut(s) 1415, 1440, 1647
Bst4CI ACNGT 3 cut(s) 19, 801, 1142
Bst6I CTCTTC 4 cut(s) 251, 295, 1083, 1523
BstACI GRCGYC 1 cut(s) 51
BstBI TTCGAA 1 cut(s) 461
BstC8I GCNNGC 8 cut(s) 452, 576, 1068, 1161, 1212, 1276, 1357, 1461
BstDEI CTNAG 4 cut(s) 768, 1202, 1509, 1533
BstDSI CCRYGG 1 cut(s) 300
BstEII GGTNACC 1 cut(s) 19
BstFNI CGCG 5 cut(s) 62, 210, 383, 560, 578
BstH2I RGCGCY 3 cut(s) 308, 887, 1190
BstHHI GCGC 7 cut(s) 64, 307, 380, 574, 886, 967, 1189
BstKTI GATC 7 cut(s) 6, 11, 336, 985, 1197, 1234, 1348
BstMAI GTCTC 1 cut(s) 534
BstMBI GATC 7 cut(s) 3, 8, 333, 982, 1194, 1231, 1345
BstMWI GCNNNNNNNGC 7 cut(s) 53, 263, 881, 973, 1036, 1451, 1460
BstNI CCWGG 3 cut(s) 1415, 1440, 1647
BstNSI RCATGY 5 cut(s) 481, 1066, 1070, 1274, 1470
BstPI GGTNACC 1 cut(s) 19
BstSCI CCNGG 5 cut(s) 434, 1382, 1413, 1438, 1645
BstUI CGCG 5 cut(s) 62, 210, 383, 560, 578
BstV1I GCAGC 1 cut(s) 1475
BstV2I GAAGAC 2 cut(s) 205, 1123
BstX2I RGATCY 2 cut(s) 333, 1194
BstYI RGATCY 2 cut(s) 333, 1194
BstZ17I GTATAC 1 cut(s) 765
Bsu36I CCTNAGG 1 cut(s) 1202
BsuRI GGCC 3 cut(s) 340, 1278, 1677
BtgI CCRYGG 1 cut(s) 300
BtgZI GCGATG 1 cut(s) 671
BtrI CACGTC 2 cut(s) 544, 1379
BtsI GCAGTG 2 cut(s) 954, 1047
BtsIMutI CAGTG 4 cut(s) 954, 1047, 1052, 1147
Cac8I GCNNGC 8 cut(s) 452, 576, 1068, 1161, 1212, 1276, 1357, 1461
CfoI GCGC 7 cut(s) 64, 307, 380, 574, 886, 967, 1189
Cfr10I RCCGGY 1 cut(s) 454
Cfr13I GGNCC 2 cut(s) 339, 1430
CseI GACGC 1 cut(s) 199
Csp6I GTAC 3 cut(s) 310, 553, 856
CspCI CAANNNNNGTGG 4 cut(s) 738, 773, 1612, 1647
CviAII CATG 9 cut(s) 416, 478, 1063, 1067, 1169, 1175, 1271, 1312, 1467
CviQI GTAC 3 cut(s) 310, 553, 856
DdeI CTNAG 4 cut(s) 768, 1202, 1509, 1533
DpnI GATC 7 cut(s) 5, 10, 335, 984, 1196, 1233, 1347
DpnII GATC 7 cut(s) 3, 8, 333, 982, 1194, 1231, 1345
Eam1104I CTCTTC 4 cut(s) 251, 295, 1083, 1523
EarI CTCTTC 4 cut(s) 251, 295, 1083, 1523
Eco147I AGGCCT 1 cut(s) 1278
Eco32I GATATC 1 cut(s) 849
Eco47I GGWCC 1 cut(s) 1430
Eco47III AGCGCT 2 cut(s) 885, 1188
Eco57I CTGAAG 1 cut(s) 1504
Eco81I CCTNAGG 1 cut(s) 1202
Eco91I GGTNACC 1 cut(s) 19
EcoO65I GGTNACC 1 cut(s) 19
EcoRI GAATTC 1 cut(s) 370
EcoRII CCWGG 3 cut(s) 1413, 1438, 1645
EcoRV GATATC 1 cut(s) 849
EcoT22I ATGCAT 1 cut(s) 1068
Esp3I CGTCTC 1 cut(s) 534
FaeI CATG 9 cut(s) 419, 481, 1066, 1070, 1172, 1178, 1274, 1315, 1470
FalI AAGNNNNNCTT 2 cut(s) 1115, 1147
FaqI GGGAC 2 cut(s) 810, 1389
FatI CATG 9 cut(s) 415, 477, 1062, 1066, 1168, 1174, 1270, 1311, 1466
FauI CCCGC 5 cut(s) 485, 578, 583, 601, 1602
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 764
Fnu4HI GCNGC 5 cut(s) 57, 60, 381, 606, 1464
Fsp4HI GCNGC 5 cut(s) 57, 60, 381, 606, 1464
FspBI CTAG 2 cut(s) 792, 1599
GlaI GCGC 7 cut(s) 63, 306, 379, 573, 885, 966, 1188
GluI GCNGC 5 cut(s) 57, 60, 381, 606, 1464
GsaI CCCAGC 2 cut(s) 1376, 1660
GsuI CTGGAG 1 cut(s) 1461
HaeII RGCGCY 3 cut(s) 308, 887, 1190
HaeIII GGCC 3 cut(s) 340, 1278, 1677
HapII CCGG 7 cut(s) 337, 435, 455, 722, 898, 926, 1383
HgaI GACGC 1 cut(s) 199
HhaI GCGC 7 cut(s) 64, 307, 380, 574, 886, 967, 1189
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 9 cut(s) 419, 481, 1066, 1070, 1172, 1178, 1274, 1315, 1470
Hin6I GCGC 7 cut(s) 62, 305, 378, 572, 884, 965, 1187
HinP1I GCGC 7 cut(s) 62, 305, 378, 572, 884, 965, 1187
HincII GTYRAC 1 cut(s) 1060
HindII GTYRAC 1 cut(s) 1060
HindIII AAGCTT 2 cut(s) 1388, 1640
HinfI GANTC 1 cut(s) 692
HpaII CCGG 7 cut(s) 337, 435, 455, 722, 898, 926, 1383
HphI GGTGA 4 cut(s) 13, 183, 208, 401
Hpy166II GTNNAC 7 cut(s) 691, 744, 765, 936, 1060, 1268, 1433
Hpy188I TCNGA 5 cut(s) 8, 263, 369, 982, 1122
Hpy188III TCNNGA 3 cut(s) 331, 898, 1201
Hpy8I GTNNAC 7 cut(s) 691, 744, 765, 936, 1060, 1268, 1433
Hpy99I CGWCG 2 cut(s) 53, 56
HpyAV CCTTC 3 cut(s) 277, 1013, 1117
HpyCH4III ACNGT 3 cut(s) 19, 801, 1142
HpyCH4IV ACGT 5 cut(s) 51, 543, 1241, 1298, 1378
HpyF10VI GCNNNNNNNGC 7 cut(s) 53, 263, 881, 973, 1036, 1451, 1460
HpyF3I CTNAG 4 cut(s) 768, 1202, 1509, 1533
HpySE526I ACGT 5 cut(s) 51, 543, 1241, 1298, 1378
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 9 cut(s) 419, 481, 1066, 1070, 1172, 1178, 1274, 1315, 1470
HspAI GCGC 7 cut(s) 62, 305, 378, 572, 884, 965, 1187
Kpn2I TCCGGA 1 cut(s) 897
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 7 cut(s) 3, 8, 333, 982, 1194, 1231, 1345
LguI GCTCTTC 1 cut(s) 1523
LmnI GCTCC 4 cut(s) 83, 128, 1442, 1451
Lsp1109I GCAGC 1 cut(s) 1475
LweI GCATC 5 cut(s) 496, 615, 708, 1197, 1583
MaeI CTAG 2 cut(s) 792, 1599
MaeII ACGT 5 cut(s) 51, 543, 1241, 1298, 1378
MaeIII GTNAC 1 cut(s) 19
MalI GATC 7 cut(s) 5, 10, 335, 984, 1196, 1233, 1347
MbiI CCGCTC 1 cut(s) 123
MboI GATC 7 cut(s) 3, 8, 333, 982, 1194, 1231, 1345
MflI RGATCY 2 cut(s) 333, 1194
MhlI GDGCHC 1 cut(s) 1047
MluCI AATT 5 cut(s) 370, 1546, 1635, 1665, 1701
MlyI GAGTC 1 cut(s) 686
MmeI TCCRAC 1 cut(s) 815
Mph1103I ATGCAT 1 cut(s) 1068
MroI TCCGGA 1 cut(s) 897
MroXI GAANNNNTTC 1 cut(s) 1517
MseI TTAA 6 cut(s) 429, 1182, 1317, 1392, 1638, 1705
MslI CAYNNNNRTG 1 cut(s) 1173
MspI CCGG 7 cut(s) 337, 435, 455, 722, 898, 926, 1383
MspR9I CCNGG 5 cut(s) 436, 1384, 1415, 1440, 1647
Mva1269I GAATGC 4 cut(s) 469, 643, 658, 1425
MvaI CCWGG 3 cut(s) 1415, 1440, 1647
MvnI CGCG 5 cut(s) 62, 210, 383, 560, 578
MwoI GCNNNNNNNGC 7 cut(s) 53, 263, 881, 973, 1036, 1451, 1460
NciI CCSGG 2 cut(s) 436, 1384
NdeII GATC 7 cut(s) 3, 8, 333, 982, 1194, 1231, 1345
NlaIII CATG 9 cut(s) 419, 481, 1066, 1070, 1172, 1178, 1274, 1315, 1470
NlaIV GGNNCC 2 cut(s) 335, 1431
NmeAIII GCCGAG 1 cut(s) 674
NmuCI GTSAC 1 cut(s) 19
NsiI ATGCAT 1 cut(s) 1068
NspI RCATGY 5 cut(s) 481, 1066, 1070, 1274, 1470
NspV TTCGAA 1 cut(s) 461
PaeI GCATGC 1 cut(s) 1070
PceI AGGCCT 1 cut(s) 1278
PciI ACATGT 1 cut(s) 477
PciSI GCTCTTC 1 cut(s) 1523
PctI GAATGC 4 cut(s) 469, 643, 658, 1425
PdmI GAANNNNTTC 1 cut(s) 1517
PflMI CCANNNNNTGG 1 cut(s) 1439
PkrI GCNGC 5 cut(s) 58, 61, 382, 607, 1465
PleI GAGTC 1 cut(s) 686
PpsI GAGTC 1 cut(s) 686
PscI ACATGT 1 cut(s) 477
Psp6I CCWGG 3 cut(s) 1413, 1438, 1645
PspEI GGTNACC 1 cut(s) 19
PspFI CCCAGC 2 cut(s) 1372, 1656
PspGI CCWGG 3 cut(s) 1413, 1438, 1645
PspN4I GGNNCC 2 cut(s) 335, 1431
PspPI GGNCC 2 cut(s) 339, 1430
PsuI RGATCY 2 cut(s) 333, 1194
RsaI GTAC 3 cut(s) 311, 554, 857
RsaNI GTAC 3 cut(s) 310, 553, 856
RseI CAYNNNNRTG 1 cut(s) 1173
SapI GCTCTTC 1 cut(s) 1523
SaqAI TTAA 6 cut(s) 429, 1182, 1317, 1392, 1638, 1705
SatI GCNGC 5 cut(s) 57, 60, 381, 606, 1464
Sau3AI GATC 7 cut(s) 3, 8, 333, 982, 1194, 1231, 1345
Sau96I GGNCC 2 cut(s) 339, 1430
SchI GAGTC 1 cut(s) 686
ScrFI CCNGG 5 cut(s) 436, 1384, 1415, 1440, 1647
SduI GDGCHC 1 cut(s) 1047
SfaNI GCATC 5 cut(s) 496, 615, 708, 1197, 1583
SfuI TTCGAA 1 cut(s) 461
SinI GGWCC 1 cut(s) 1430
SmiMI CAYNNNNRTG 1 cut(s) 1173
SmlI CTYRAG 1 cut(s) 1190
SmoI CTYRAG 1 cut(s) 1190
SphI GCATGC 1 cut(s) 1070
Sse9I AATT 5 cut(s) 370, 1546, 1635, 1665, 1701
SseBI AGGCCT 1 cut(s) 1278
SspMI CTAG 2 cut(s) 792, 1599
StuI AGGCCT 1 cut(s) 1278
StyD4I CCNGG 5 cut(s) 434, 1382, 1413, 1438, 1645
TaaI ACNGT 3 cut(s) 19, 801, 1142
TaiI ACGT 5 cut(s) 54, 546, 1244, 1301, 1381
TaqI TCGA 2 cut(s) 461, 1687
TasI AATT 5 cut(s) 370, 1546, 1635, 1665, 1701
TauI GCSGC 4 cut(s) 59, 62, 383, 608
Tru1I TTAA 6 cut(s) 429, 1182, 1317, 1392, 1638, 1705
Tru9I TTAA 6 cut(s) 429, 1182, 1317, 1392, 1638, 1705
TscAI CASTG 4 cut(s) 954, 1054, 1059, 1147
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 1463
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 3 cut(s) 822, 1608, 1634
TspGWI ACGGA 2 cut(s) 526, 1494
TspRI CASTG 4 cut(s) 954, 1054, 1059, 1147
Van91I CCANNNNNTGG 1 cut(s) 1439
VpaK11BI GGWCC 1 cut(s) 1430
XapI RAATTY 2 cut(s) 370, 1701
XceI RCATGY 5 cut(s) 481, 1066, 1070, 1274, 1470
XmiI GTMKAC 1 cut(s) 764
XmnI GAANNNNTTC 1 cut(s) 1517
XspI CTAG 2 cut(s) 792, 1599
ZraI GACGTC 1 cut(s) 52
Zsp2I ATGCAT 1 cut(s) 1068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.