MD06G1162200.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0016330
Physical Location & Seq
Reverse (-)
30287885 .. 30288779
895 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1162200.v1.1.491

Sequence Viewer

Length: 804 bp
ATGAAAGCAGCAAAGGTCGCCAAAAACCATCCCAACAAAAAAGCAGACGGAGCTGCCTCTCTGCTCAAATCCTGCGCTTCGCTCTGCCACCTCAAACAAATCCACGCCCACATAGTCCGATCAAACCTTCACCGGAACGCCTCCTTAGCCTCCACTCTCATCTCTTTCTACGCCTCTCTCTGCGCCTCGCCTCGCTACACCCACCTCGTCTTCACCTCTTTCCCCAACCCAAATCTCTCTCTCTCTCTCTTCAACCACGCCGTCAGGGCTTTCTCTAAGATCTCCGTGCTCTGTTTCGAGGCGGTGAGTTTGTATTCGCAGATGGTTTCGGTTGGAATTAGACCTGATAACTATACGTACCCTTTTGTGCTGAATTCGTGCGCTGCGTTGAGTGATCTTTGTGGCGGGACTGAGGTCCATGGACGCATTGTGAAAATGGGTTTTGGGTTTTGTGTGGGGATGGCGCGGAAGCTGTTTGATGAAATGTGTGAGAGAGATGTTGTTTCTTACAATGCGGTTTTGGGGGCTCATGCAAGAGGCGGGGTTGATATGGGGTGTGCTTTGGTTTTGTTTGAGGGGATGCTGGGGAAAAATGTGATATCTTGGAACGCCATGGTCGTGGGTTGTGTAAATAGTGGGGATCTGGTTTCGGCAAGGGCTGTGTTTGATAGGATGCCTGACAGGAATGCTGTTTATTGGACTACAATGTTGGTGGGGTATACGAAAAGCGGTTTTATGGATAAGGCGAAGGCCCTCTTTGATGAAATGCCTGAGAGGGGATTGATTTGCTGGAGAAGGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

268

Amino Acids

29.23

Weight (kDa)

9.22

Isoelectric Point (pI)

26.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 229 - 261 6.9e-06 PPR repeat family
PPR PF01535 233 - 261 8e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016330)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06640 FvH4_5g06640 FvH4_5g06640
malus_domestica MD06G1162200.v1.1 MD14G1167900.v1.1
prunus_persica Prupe.5G162800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0192051
rosa_laevigata RLG00000004405
rosa_multiflora Rmu_ssc0000421.1_g000037
rosa_roxburghii Rroxscaffold_3G00263330
rosa_rugosa Rorug06G0512800.1
rosa_samantha Rh7BG124700 Rh7CG127400 Rh7DG126200
rosa_wichuraiana Rw7G010480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 719
AccII CGCG 1 cut(s) 466
AciI CCGC 6 cut(s) 302, 405, 466, 515, 540, 729
AclWI GGATC 1 cut(s) 648
AcsI RAATTY 1 cut(s) 373
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 1 cut(s) 776
AgsI TTSAA 1 cut(s) 253
AluBI AGCT 2 cut(s) 53, 472
AluI AGCT 2 cut(s) 53, 472
Alw21I GWGCWC 1 cut(s) 291
AlwI GGATC 1 cut(s) 648
AoxI GGCC 1 cut(s) 750
ApeKI GCWGC 3 cut(s) 8, 53, 383
ApoI RAATTY 1 cut(s) 373
AspLEI GCGC 4 cut(s) 77, 185, 383, 466
AspS9I GGNCC 2 cut(s) 415, 751
AsuHPI GGTGA 3 cut(s) 122, 205, 316
AvaII GGWCC 1 cut(s) 415
BanII GRGCYC 1 cut(s) 529
BbsI GAAGAC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 3 cut(s) 20, 40, 370
BccI CCATC 3 cut(s) 36, 316, 454
BceAI ACGGC 1 cut(s) 245
BglI GCCNNNNNGGC 1 cut(s) 266
BglII AGATCT 1 cut(s) 279
BisI GCNGC 3 cut(s) 9, 54, 384
BlsI GCNGC 3 cut(s) 10, 55, 385
Bme18I GGWCC 1 cut(s) 415
BmgT120I GGNCC 2 cut(s) 415, 751
BmsI GCATC 2 cut(s) 570, 663
BoxI GACNNNNGTC 1 cut(s) 413
BpiI GAAGAC 1 cut(s) 202
Bpu10I CCTNAGC 1 cut(s) 145
BsaAI YACGTR 1 cut(s) 357
BsaJI CCNNGG 2 cut(s) 418, 612
BsaWI WCCGGW 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 776
BseDI CCNNGG 2 cut(s) 418, 612
BseGI GGATG 4 cut(s) 28, 465, 585, 678
BseLI CCNNNNNNNGG 1 cut(s) 776
BseMII CTCAG 2 cut(s) 402, 762
BseXI GCAGC 3 cut(s) 20, 40, 370
BseYI CCCAGC 1 cut(s) 583
Bsh1236I CGCG 1 cut(s) 466
BshFI GGCC 1 cut(s) 752
BsiHKAI GWGCWC 1 cut(s) 291
BsiSI CCGG 1 cut(s) 133
BslFI GGGAC 1 cut(s) 421
BslI CCNNNNNNNGG 1 cut(s) 776
BsmFI GGGAC 1 cut(s) 421
BsmI GAATGC 1 cut(s) 691
BsnI GGCC 1 cut(s) 752
Bsp1286I GDGCHC 2 cut(s) 291, 529
Bsp143I GATC 4 cut(s) 119, 279, 394, 640
Bsp19I CCATGG 2 cut(s) 418, 612
BspACI CCGC 6 cut(s) 302, 405, 466, 515, 540, 729
BspANI GGCC 1 cut(s) 752
BspCNI CTCAG 2 cut(s) 403, 763
BspFNI CGCG 1 cut(s) 466
BspPI GGATC 1 cut(s) 648
BssECI CCNNGG 2 cut(s) 418, 612
BssMI GATC 4 cut(s) 119, 279, 394, 640
BssNAI GTATAC 1 cut(s) 720
BssT1I CCWWGG 2 cut(s) 418, 612
Bst1107I GTATAC 1 cut(s) 720
Bst6I CTCTTC 1 cut(s) 254
BstBAI YACGTR 1 cut(s) 357
BstDEI CTNAG 4 cut(s) 145, 276, 411, 771
BstDSI CCRYGG 2 cut(s) 418, 612
BstF5I GGATG 4 cut(s) 28, 465, 585, 678
BstFNI CGCG 1 cut(s) 466
BstHHI GCGC 4 cut(s) 77, 185, 383, 466
BstKTI GATC 4 cut(s) 122, 282, 397, 643
BstMBI GATC 4 cut(s) 119, 279, 394, 640
BstMWI GCNNNNNNNGC 4 cut(s) 17, 50, 146, 266
BstPAI GACNNNNGTC 1 cut(s) 413
BstSNI TACGTA 1 cut(s) 357
BstUI CGCG 1 cut(s) 466
BstV1I GCAGC 3 cut(s) 20, 40, 370
BstV2I GAAGAC 1 cut(s) 202
BstX2I RGATCY 2 cut(s) 279, 640
BstXI CCANNNNNNTGG 1 cut(s) 619
BstYI RGATCY 2 cut(s) 279, 640
BstZ17I GTATAC 1 cut(s) 720
BsuRI GGCC 1 cut(s) 752
BtgI CCRYGG 2 cut(s) 418, 612
BtsCI GGATG 4 cut(s) 28, 465, 585, 678
CfoI GCGC 4 cut(s) 77, 185, 383, 466
Cfr13I GGNCC 2 cut(s) 415, 751
CseI GACGC 1 cut(s) 432
Csp6I GTAC 1 cut(s) 358
CspCI CAANNNNNGTGG 2 cut(s) 693, 728
CviAII CATG 3 cut(s) 419, 530, 613
CviJI RGCY 8 cut(s) 53, 149, 269, 472, 527, 659, 752, 799
CviKI_1 RGCY 8 cut(s) 53, 149, 269, 472, 527, 659, 752, 799
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 4 cut(s) 145, 276, 411, 771
DpnI GATC 4 cut(s) 121, 281, 396, 642
DpnII GATC 4 cut(s) 119, 279, 394, 640
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
Eco105I TACGTA 1 cut(s) 357
Eco130I CCWWGG 2 cut(s) 418, 612
Eco24I GRGCYC 1 cut(s) 529
Eco32I GATATC 1 cut(s) 600
Eco47I GGWCC 1 cut(s) 415
EcoO109I RGGNCCY 1 cut(s) 751
EcoRI GAATTC 1 cut(s) 373
EcoRV GATATC 1 cut(s) 600
EcoT14I CCWWGG 2 cut(s) 418, 612
EcoT38I GRGCYC 1 cut(s) 529
ErhI CCWWGG 2 cut(s) 418, 612
FaeI CATG 3 cut(s) 422, 533, 616
FaiI YATR 9 cut(s) 113, 354, 420, 531, 551, 614, 720, 737, 802
FalI AAGNNNNNCTT 2 cut(s) 740, 772
FaqI GGGAC 1 cut(s) 421
FatI CATG 3 cut(s) 418, 529, 612
FauI CCCGC 2 cut(s) 398, 533
FblI GTMKAC 1 cut(s) 719
Fnu4HI GCNGC 3 cut(s) 9, 54, 384
FokI GGATG 4 cut(s) 15, 472, 592, 685
FriOI GRGCYC 1 cut(s) 529
Fsp4HI GCNGC 3 cut(s) 9, 54, 384
GlaI GCGC 4 cut(s) 76, 184, 382, 465
GluI GCNGC 3 cut(s) 9, 54, 384
GsaI CCCAGC 1 cut(s) 587
HaeIII GGCC 1 cut(s) 752
HapII CCGG 1 cut(s) 133
HgaI GACGC 1 cut(s) 432
HhaI GCGC 4 cut(s) 77, 185, 383, 466
Hin1II CATG 3 cut(s) 422, 533, 616
Hin6I GCGC 4 cut(s) 75, 183, 381, 464
HinP1I GCGC 4 cut(s) 75, 183, 381, 464
HpaII CCGG 1 cut(s) 133
HphI GGTGA 3 cut(s) 122, 205, 316
Hpy166II GTNNAC 1 cut(s) 720
Hpy188I TCNGA 1 cut(s) 119
Hpy8I GTNNAC 1 cut(s) 720
HpyAV CCTTC 3 cut(s) 137, 742, 789
HpyCH4IV ACGT 1 cut(s) 356
HpyCH4V TGCA 1 cut(s) 533
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 50, 146, 266
HpyF3I CTNAG 4 cut(s) 145, 276, 411, 771
HpySE526I ACGT 1 cut(s) 356
Hsp92II CATG 3 cut(s) 422, 533, 616
HspAI GCGC 4 cut(s) 75, 183, 381, 464
Kzo9I GATC 4 cut(s) 119, 279, 394, 640
LmnI GCTCC 1 cut(s) 50
Lsp1109I GCAGC 3 cut(s) 20, 40, 370
LweI GCATC 2 cut(s) 570, 663
MaeII ACGT 1 cut(s) 356
MalI GATC 4 cut(s) 121, 281, 396, 642
MboI GATC 4 cut(s) 119, 279, 394, 640
MboII GAAGA 2 cut(s) 202, 241
MflI RGATCY 2 cut(s) 279, 640
MhlI GDGCHC 2 cut(s) 291, 529
MluCI AATT 2 cut(s) 336, 373
MmeI TCCRAC 1 cut(s) 313
MslI CAYNNNNRTG 1 cut(s) 617
MspI CCGG 1 cut(s) 133
Mva1269I GAATGC 1 cut(s) 691
MvnI CGCG 1 cut(s) 466
MwoI GCNNNNNNNGC 4 cut(s) 17, 50, 146, 266
NcoI CCATGG 2 cut(s) 418, 612
NdeII GATC 4 cut(s) 119, 279, 394, 640
NlaIII CATG 3 cut(s) 422, 533, 616
PcsI WCGNNNNNNNCGW 2 cut(s) 383, 615
PctI GAATGC 1 cut(s) 691
PkrI GCNGC 3 cut(s) 10, 55, 385
Ppu21I YACGTR 1 cut(s) 357
PshAI GACNNNNGTC 1 cut(s) 413
PspFI CCCAGC 1 cut(s) 583
PspPI GGNCC 2 cut(s) 415, 751
PsuI RGATCY 2 cut(s) 279, 640
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
RseI CAYNNNNRTG 1 cut(s) 617
SatI GCNGC 3 cut(s) 9, 54, 384
Sau3AI GATC 4 cut(s) 119, 279, 394, 640
Sau96I GGNCC 2 cut(s) 415, 751
SduI GDGCHC 2 cut(s) 291, 529
SfaNI GCATC 2 cut(s) 570, 663
SinI GGWCC 1 cut(s) 415
SmiMI CAYNNNNRTG 1 cut(s) 617
SnaBI TACGTA 1 cut(s) 357
Sse9I AATT 2 cut(s) 336, 373
SsiI CCGC 6 cut(s) 302, 405, 466, 515, 540, 729
StyI CCWWGG 2 cut(s) 418, 612
TaiI ACGT 1 cut(s) 359
TaqI TCGA 1 cut(s) 297
TasI AATT 2 cut(s) 336, 373
TseI GCWGC 3 cut(s) 8, 53, 383
TspDTI ATGAA 3 cut(s) 17, 495, 777
TspGWI ACGGA 2 cut(s) 63, 274
VpaK11BI GGWCC 1 cut(s) 415
XapI RAATTY 1 cut(s) 373
XmiI GTMKAC 1 cut(s) 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.