Rh7BG124700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0016330
Physical Location & Seq
Reverse (-)
9274568 .. 9275680
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG124700.1

Sequence Viewer

Length: 1113 bp
ATGGAGAGTGCCGCGGATTTGTTCGAGGGAATGCAGGGGAGAAATGCTATATCTTGGAATGCGATGATTGTGGGGTATGTAAATAGTGGGGATGTGGTCTCGGCTAGGGATGTGTTTGATAGGATGCCGGAGAGGAATGTTGTTTCTTGGACTACAATGCTGGTGGGGTATACTAAAAATGGGTTTATGGATATGGCTAAGGATGTTTTTGATGAAATGCCTGAGCGGAGTTTGATTTGTTGGACGGCTATGATATCAGGATACTCGCAAAGTGGGAGGCCAAGTGAAGCACTTTCACTTTTCCGGAGAATGGAGAAGTCAGGGCTAAAGCCGGATGCGTTTACCATGACAGCGTTGATCTCTGCATTGGCACAGTTGGGCCGTGCTGATCTGGCAAATTGGATTGGATCTTATGTTGATCGAGAAGGCATAGAACAGAACGAACAAGTGCTCACTGCACTGGTTGACATGCATGCCAAGTGTGGGAATATGGAAGAGGCTTGTCGTGTTTTTGAGAAGATTCCTCGGAAGGATGTTTTCTCTTACAGTGCAATAATCACAGGTCTTGCTTCTCATGGTCATGGCATTAAAGCGCTTGAGATCTTCCAGAGGATGCTGGCACAAAACATCGAACCTGATCACATCACATTTGTTGGGGTATTGACTGCCTGTGGGCACGCAGGACTCGTCGAAGATGGAATGACCTATTGGGAAAGCATGATTAAAGATTACAATATTCAGCCTGATGCAGATCACTATGCTTGCGTGGTTGATATGCTGGGACGTGCTGGGAAGCTTAATGAGGCACACAATTTAGTCAAGGGCATGCCTATGGGTCCACAGCCTGGAGCATTGGGCGCTTTGCTTGCAGCATGTAGAACATACGGAAACGTAGAGATTGCTGAAAGTATTGCTGAGAAGCTCTTCAAGTTAGAGCCTGAGAATACTGGGAATTATATGCTACTTTCCGGCATCTATGCATCAAAAGAGCAATGGGATGAAGCCAGAAAAGTGCGGGAAGCAATGAACAAGAAAAGTGGAATTAAGCTTCCTGGCTTTAGCTGGGTTGAAATTAGCAAAGGCCGTTCAACTCGATTGAAGAACCAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

370

Amino Acids

40.96

Weight (kDa)

5.63

Isoelectric Point (pI)

35.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 17 - 47 1.3e-06 PPR repeat
PPR_2 PF13041 45 - 77 1e-06 PPR repeat family
PPR PF01535 48 - 76 5e-08 PPR repeat
PPR_2 PF13041 78 - 124 7.8e-14 PPR repeat family
PPR PF01535 80 - 109 4.3e-10 PPR repeat
PPR_long PF17177 80 - 174 8.3e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 177 - 225 1.4e-08 PPR repeat family
E_motif PF20431 295 - 357 1.3e-16 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016330)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06640 FvH4_5g06640 FvH4_5g06640
malus_domestica MD06G1162200.v1.1 MD14G1167900.v1.1
prunus_persica Prupe.5G162800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0192051
rosa_laevigata RLG00000004405
rosa_multiflora Rmu_ssc0000421.1_g000037
rosa_roxburghii Rroxscaffold_3G00263330
rosa_rugosa Rorug06G0512800.1
rosa_samantha Rh7BG124700 Rh7CG127400 Rh7DG126200
rosa_wichuraiana Rw7G010480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 845
AccBSI CCGCTC 1 cut(s) 226
AccI GTMKAC 1 cut(s) 170
AccII CGCG 1 cut(s) 14
AccIII TCCGGA 1 cut(s) 303
AciI CCGC 4 cut(s) 12, 14, 226, 1015
AclWI GGATC 1 cut(s) 415
AcsI RAATTY 1 cut(s) 1107
AfeI AGCGCT 1 cut(s) 594
AfiI CCNNNNNNNGG 3 cut(s) 310, 483, 845
AgsI TTSAA 4 cut(s) 928, 1070, 1089, 1099
AjiI CACGTC 1 cut(s) 785
AjnI CCWGG 2 cut(s) 844, 1051
AjuI GAANNNNNNNTTGG 2 cut(s) 691, 723
AluBI AGCT 4 cut(s) 796, 922, 1048, 1062
AluI AGCT 4 cut(s) 796, 922, 1048, 1062
Alw21I GWGCWC 1 cut(s) 453
Alw26I GTCTC 1 cut(s) 103
AlwI GGATC 1 cut(s) 415
Aor13HI TCCGGA 1 cut(s) 303
Aor51HI AGCGCT 1 cut(s) 594
AoxI GGCC 3 cut(s) 278, 379, 1081
ApeKI GCWGC 1 cut(s) 869
ApoI RAATTY 1 cut(s) 1107
Asp700I GAANNNNTTC 1 cut(s) 923
AspLEI GCGC 2 cut(s) 595, 860
AspS9I GGNCC 2 cut(s) 379, 836
AvaII GGWCC 1 cut(s) 836
BaeGI GKGCMC 1 cut(s) 678
Bbv12I GWGCWC 1 cut(s) 453
BbvI GCAGC 1 cut(s) 881
BccI CCATC 1 cut(s) 689
BceAI ACGGC 3 cut(s) 261, 366, 1068
BciT130I CCWGG 2 cut(s) 846, 1053
BciVI GTATCC 1 cut(s) 254
BclI TGATCA 1 cut(s) 637
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 1 cut(s) 105
BfoI RGCGCY 2 cut(s) 596, 861
BfuI GTATCC 1 cut(s) 254
BglII AGATCT 1 cut(s) 600
BisI GCNGC 2 cut(s) 12, 870
BlsI GCNGC 2 cut(s) 13, 871
Bme1390I CCNGG 2 cut(s) 846, 1053
Bme18I GGWCC 1 cut(s) 836
BmgBI CACGTC 1 cut(s) 785
BmgT120I GGNCC 2 cut(s) 379, 836
BmiI GGNNCC 1 cut(s) 837
BmrFI CCNGG 2 cut(s) 846, 1053
BmrI ACTGGG 1 cut(s) 957
BmsI GCATC 6 cut(s) 114, 325, 603, 736, 981, 989
BmuI ACTGGG 1 cut(s) 957
BpmI CTGGAG 1 cut(s) 867
Bpu10I CCTNAGC 2 cut(s) 198, 222
BpuEI CTTGAG 1 cut(s) 617
BsaBI GATNNNNATC 1 cut(s) 750
BsaI GGTCTC 1 cut(s) 103
BsaJI CCNNGG 2 cut(s) 12, 524
BsaWI WCCGGW 1 cut(s) 303
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bsc4I CCNNNNNNNGG 3 cut(s) 310, 483, 845
Bse1I ACTGG 2 cut(s) 465, 952
Bse3DI GCAATG 2 cut(s) 998, 1029
Bse8I GATNNNNATC 1 cut(s) 750
BseAI TCCGGA 1 cut(s) 303
BseBI CCWGG 2 cut(s) 846, 1053
BseDI CCNNGG 2 cut(s) 12, 524
BseGI GGATG 8 cut(s) 97, 115, 129, 208, 340, 538, 618, 1003
BseJI GATNNNNATC 1 cut(s) 750
BseLI CCNNNNNNNGG 3 cut(s) 310, 483, 845
BseMI GCAATG 2 cut(s) 998, 1029
BseMII CTCAG 3 cut(s) 213, 906, 930
BseNI ACTGG 2 cut(s) 465, 952
BseSI GKGCMC 1 cut(s) 678
BseXI GCAGC 1 cut(s) 881
BseYI CCCAGC 3 cut(s) 778, 788, 1062
BsgI GTGCAG 1 cut(s) 441
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 3 cut(s) 280, 381, 1083
BsiHKAI GWGCWC 1 cut(s) 453
BsiSI CCGG 4 cut(s) 128, 304, 332, 969
BslFI GGGAC 1 cut(s) 795
BslI CCNNNNNNNGG 3 cut(s) 310, 483, 845
BsmAI GTCTC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 795
BsmI GAATGC 2 cut(s) 36, 64
BsnI GGCC 3 cut(s) 280, 381, 1083
Bso31I GGTCTC 1 cut(s) 103
Bsp1286I GDGCHC 2 cut(s) 453, 678
Bsp13I TCCGGA 1 cut(s) 303
Bsp143I GATC 7 cut(s) 357, 388, 407, 418, 600, 637, 751
BspACI CCGC 4 cut(s) 12, 14, 226, 1015
BspANI GGCC 3 cut(s) 280, 381, 1083
BspCNI CTCAG 3 cut(s) 214, 907, 931
BspEI TCCGGA 1 cut(s) 303
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 1 cut(s) 837
BspPI GGATC 1 cut(s) 415
BspQI GCTCTTC 1 cut(s) 929
BspTNI GGTCTC 1 cut(s) 103
BsrBI CCGCTC 1 cut(s) 226
BsrDI GCAATG 2 cut(s) 998, 1029
BsrI ACTGG 2 cut(s) 465, 952
BssECI CCNNGG 2 cut(s) 12, 524
BssMI GATC 7 cut(s) 357, 388, 407, 418, 600, 637, 751
BssNAI GTATAC 1 cut(s) 171
Bst1107I GTATAC 1 cut(s) 171
Bst2UI CCWGG 2 cut(s) 846, 1053
Bst4CI ACNGT 2 cut(s) 375, 548
Bst6I CTCTTC 2 cut(s) 489, 929
BstC8I GCNNGC 6 cut(s) 474, 618, 678, 763, 827, 867
BstDEI CTNAG 4 cut(s) 198, 222, 915, 939
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 8 cut(s) 97, 115, 129, 208, 340, 538, 618, 1003
BstFNI CGCG 1 cut(s) 14
BstH2I RGCGCY 2 cut(s) 596, 861
BstHHI GCGC 2 cut(s) 595, 860
BstKTI GATC 7 cut(s) 360, 391, 410, 421, 603, 640, 754
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 7 cut(s) 357, 388, 407, 418, 600, 637, 751
BstMWI GCNNNNNNNGC 3 cut(s) 392, 857, 866
BstNI CCWGG 2 cut(s) 846, 1053
BstNSI RCATGY 4 cut(s) 472, 476, 829, 876
BstSCI CCNGG 2 cut(s) 844, 1051
BstSLI GKGCMC 1 cut(s) 678
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 881
BstX2I RGATCY 2 cut(s) 407, 600
BstYI RGATCY 2 cut(s) 407, 600
BstZ17I GTATAC 1 cut(s) 171
BsuI GTATCC 1 cut(s) 254
BsuRI GGCC 3 cut(s) 280, 381, 1083
BtgI CCRYGG 1 cut(s) 12
BtgZI GCGATG 1 cut(s) 77
BtrI CACGTC 1 cut(s) 785
BtsCI GGATG 8 cut(s) 97, 115, 129, 208, 340, 538, 618, 1003
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 3 cut(s) 453, 458, 553
Cac8I GCNNGC 6 cut(s) 474, 618, 678, 763, 827, 867
CfoI GCGC 2 cut(s) 595, 860
Cfr13I GGNCC 2 cut(s) 379, 836
Cfr42I CCGCGG 1 cut(s) 15
CspCI CAANNNNNGTGG 4 cut(s) 144, 179, 1018, 1053
CviAII CATG 8 cut(s) 346, 469, 473, 575, 581, 718, 826, 873
DdeI CTNAG 4 cut(s) 198, 222, 915, 939
DpnI GATC 7 cut(s) 359, 390, 409, 420, 602, 639, 753
DpnII GATC 7 cut(s) 357, 388, 407, 418, 600, 637, 751
Eam1104I CTCTTC 2 cut(s) 489, 929
EarI CTCTTC 2 cut(s) 489, 929
Eco31I GGTCTC 1 cut(s) 103
Eco32I GATATC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 836
Eco47III AGCGCT 1 cut(s) 594
EcoRII CCWGG 2 cut(s) 844, 1051
EcoRV GATATC 1 cut(s) 255
EcoT22I ATGCAT 2 cut(s) 474, 982
FaeI CATG 8 cut(s) 349, 472, 476, 578, 584, 721, 829, 876
FaqI GGGAC 1 cut(s) 795
FatI CATG 8 cut(s) 345, 468, 472, 574, 580, 717, 825, 872
FauI CCCGC 1 cut(s) 1008
FbaI TGATCA 1 cut(s) 637
FblI GTMKAC 1 cut(s) 170
Fnu4HI GCNGC 2 cut(s) 12, 870
FokI GGATG 8 cut(s) 104, 122, 136, 215, 347, 545, 625, 1010
Fsp4HI GCNGC 2 cut(s) 12, 870
FspBI CTAG 1 cut(s) 105
GlaI GCGC 2 cut(s) 594, 859
GluI GCNGC 2 cut(s) 12, 870
GsaI CCCAGC 3 cut(s) 782, 792, 1066
GsuI CTGGAG 1 cut(s) 867
HaeII RGCGCY 2 cut(s) 596, 861
HaeIII GGCC 3 cut(s) 280, 381, 1083
HapII CCGG 4 cut(s) 128, 304, 332, 969
HhaI GCGC 2 cut(s) 595, 860
Hin1II CATG 8 cut(s) 349, 472, 476, 578, 584, 721, 829, 876
Hin6I GCGC 2 cut(s) 593, 858
HinP1I GCGC 2 cut(s) 593, 858
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HindIII AAGCTT 2 cut(s) 794, 1046
HinfI GANTC 2 cut(s) 520, 684
HpaII CCGG 4 cut(s) 128, 304, 332, 969
Hpy166II GTNNAC 4 cut(s) 171, 342, 466, 839
Hpy188I TCNGA 1 cut(s) 528
Hpy188III TCNNGA 4 cut(s) 258, 304, 422, 607
Hpy8I GTNNAC 4 cut(s) 171, 342, 466, 839
Hpy99I CGWCG 1 cut(s) 692
HpyAV CCTTC 2 cut(s) 419, 523
HpyCH4III ACNGT 2 cut(s) 375, 548
HpyCH4IV ACGT 2 cut(s) 784, 891
HpyCH4V TGCA 8 cut(s) 34, 365, 458, 472, 551, 749, 869, 980
HpyF10VI GCNNNNNNNGC 3 cut(s) 392, 857, 866
HpyF3I CTNAG 4 cut(s) 198, 222, 915, 939
HpySE526I ACGT 2 cut(s) 784, 891
Hsp92II CATG 8 cut(s) 349, 472, 476, 578, 584, 721, 829, 876
HspAI GCGC 2 cut(s) 593, 858
Kpn2I TCCGGA 1 cut(s) 303
Ksp22I TGATCA 1 cut(s) 637
KspI CCGCGG 1 cut(s) 15
Kzo9I GATC 7 cut(s) 357, 388, 407, 418, 600, 637, 751
LguI GCTCTTC 1 cut(s) 929
LmnI GCTCC 1 cut(s) 848
Lsp1109I GCAGC 1 cut(s) 881
LweI GCATC 6 cut(s) 114, 325, 603, 736, 981, 989
MaeI CTAG 1 cut(s) 105
MaeII ACGT 2 cut(s) 784, 891
MalI GATC 7 cut(s) 359, 390, 409, 420, 602, 639, 753
MbiI CCGCTC 1 cut(s) 226
MboI GATC 7 cut(s) 357, 388, 407, 418, 600, 637, 751
MboII GAAGA 6 cut(s) 506, 529, 595, 704, 916, 1111
MflI RGATCY 2 cut(s) 407, 600
MhlI GDGCHC 2 cut(s) 453, 678
MluCI AATT 6 cut(s) 397, 811, 952, 1041, 1071, 1107
MlyI GAGTC 1 cut(s) 678
MmeI TCCRAC 1 cut(s) 221
MnlI CCTC 7 cut(s) 19, 126, 270, 490, 534, 603, 796
Mph1103I ATGCAT 2 cut(s) 474, 982
MroI TCCGGA 1 cut(s) 303
MroXI GAANNNNTTC 1 cut(s) 923
MseI TTAA 5 cut(s) 588, 723, 798, 1044, 1111
MslI CAYNNNNRTG 2 cut(s) 579, 830
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 4 cut(s) 128, 304, 332, 969
MspR9I CCNGG 2 cut(s) 846, 1053
Mva1269I GAATGC 2 cut(s) 36, 64
MvaI CCWGG 2 cut(s) 846, 1053
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 3 cut(s) 392, 857, 866
NdeII GATC 7 cut(s) 357, 388, 407, 418, 600, 637, 751
NlaIII CATG 8 cut(s) 349, 472, 476, 578, 584, 721, 829, 876
NlaIV GGNNCC 1 cut(s) 837
NmeAIII GCCGAG 1 cut(s) 80
NsiI ATGCAT 2 cut(s) 474, 982
NspI RCATGY 4 cut(s) 472, 476, 829, 876
PaeI GCATGC 2 cut(s) 476, 829
PciSI GCTCTTC 1 cut(s) 929
PcsI WCGNNNNNNNCGW 1 cut(s) 684
PctI GAATGC 2 cut(s) 36, 64
PdmI GAANNNNTTC 1 cut(s) 923
PfeI GAWTC 1 cut(s) 520
PflMI CCANNNNNTGG 1 cut(s) 845
PkrI GCNGC 2 cut(s) 13, 871
PleI GAGTC 1 cut(s) 678
PpsI GAGTC 1 cut(s) 678
Psp6I CCWGG 2 cut(s) 844, 1051
PspFI CCCAGC 3 cut(s) 778, 788, 1062
PspGI CCWGG 2 cut(s) 844, 1051
PspN4I GGNNCC 1 cut(s) 837
PspPI GGNCC 2 cut(s) 379, 836
PsuI RGATCY 2 cut(s) 407, 600
RseI CAYNNNNRTG 2 cut(s) 579, 830
SacII CCGCGG 1 cut(s) 15
SapI GCTCTTC 1 cut(s) 929
SaqAI TTAA 5 cut(s) 588, 723, 798, 1044, 1111
SatI GCNGC 2 cut(s) 12, 870
Sau3AI GATC 7 cut(s) 357, 388, 407, 418, 600, 637, 751
Sau96I GGNCC 2 cut(s) 379, 836
SchI GAGTC 1 cut(s) 678
ScrFI CCNGG 2 cut(s) 846, 1053
SduI GDGCHC 2 cut(s) 453, 678
SetI ASST 9 cut(s) 565, 637, 707, 787, 798, 894, 924, 1050, 1064
SfaNI GCATC 6 cut(s) 114, 325, 603, 736, 981, 989
Sfr303I CCGCGG 1 cut(s) 15
SgrBI CCGCGG 1 cut(s) 15
SinI GGWCC 1 cut(s) 836
SmiMI CAYNNNNRTG 2 cut(s) 579, 830
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
SphI GCATGC 2 cut(s) 476, 829
Sse9I AATT 6 cut(s) 397, 811, 952, 1041, 1071, 1107
SsiI CCGC 4 cut(s) 12, 14, 226, 1015
SspI AATATT 1 cut(s) 736
SspMI CTAG 1 cut(s) 105
StyD4I CCNGG 2 cut(s) 844, 1051
TaaI ACNGT 2 cut(s) 375, 548
TaiI ACGT 2 cut(s) 787, 894
TaqI TCGA 5 cut(s) 24, 421, 630, 690, 1093
TasI AATT 6 cut(s) 397, 811, 952, 1041, 1071, 1107
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 1 cut(s) 520
Tru1I TTAA 5 cut(s) 588, 723, 798, 1044, 1111
Tru9I TTAA 5 cut(s) 588, 723, 798, 1044, 1111
TscAI CASTG 3 cut(s) 460, 465, 553
TseI GCWGC 1 cut(s) 869
TspDTI ATGAA 3 cut(s) 228, 1014, 1040
TspGWI ACGGA 1 cut(s) 900
TspRI CASTG 3 cut(s) 460, 465, 553
Van91I CCANNNNNTGG 1 cut(s) 845
VpaK11BI GGWCC 1 cut(s) 836
XapI RAATTY 1 cut(s) 1107
XceI RCATGY 4 cut(s) 472, 476, 829, 876
XmiI GTMKAC 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 923
XspI CTAG 1 cut(s) 105
Zsp2I ATGCAT 2 cut(s) 474, 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.