RLG00000004405

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016330
Physical Location & Seq
Forward (+)
59097145 .. 59099002
1858 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004405

Sequence Viewer

Length: 1602 bp
ATGATCATCAGAGCGACAAAGGTCACCAAGAATCATCCAAACAATAAAGCCGACGGCGCCGCCGCTCTGCTAAAAGCTTGCTCATCGCTCCGCCACCTGAAGCAAATCCACGCCCACATTCTCCGCTCCAATCTCCACCGCAACGCCTCCTTAGCGTCCACTCTCATCTCTCTCTACGCCTCTCTCTCCTCCTCCTCCCCTCGCTACACCCACCATGTCTTCACCTCTTTCCCCAACCCAAACCTCTCTCTCTTCAACCACGCCATCAGGGCTTTCTCGAAGACCCACTCGCTCTGTTCCGAGGCGATGGTATTGTATAACCAAATGGTTCGCGCGGGAATGAGGCCTGATAACTATAGCTTCCCTTTTATGCTAAATTCGTGTGCCGTGAGAAGTGATATTTTTCAAGGGGTTGAGGTCCATGGCCGCATTGTTAAAACGGGGTTTGGGTTTTGTGTTCCGGTGTCGAATGCTTTGATTGATATGTATGGGAAATGTGGGGAGTTGGAGAGCGCACGGAAGGTGTTTGATGAAATGCGTGAAAGAGATGTTGTTTCGTATAATGCGGTTTTAGGGGCACATGCCAGAGGAGGTGTGGATATGGAGAGTGCCGCGGATTTGTTCGAGGGAATGCAGGGGAGAAATGCTATATCTTGGAATGCGATGATTGTGGGGTATGTAAATAGTGGGGATGTGGTCTCGGCTAGGGATGTGTTTGATAGGATGCCGGAGAGGAATGTTGTTTCTTGGACTACAATGCTGGTGGGGTATACTAAAAATGGGTTTATGGATATGGCTAAGGATGTTTTTGATGAAATGCCTGAGCGGAGTTTGATTTGTTGGACGGCTATGATATCAGGATACTCGCAAAATGGGAGGCCAAGTGAAGCACTTTCACTTTTCCGGAGGATGGAGAAATCAGGGGTAAAGCCGGATGCGTTTACCATGACAGCGTTGATCTCTGCATTGGCACAGTTGGGCCGTGCTGATCTGGCAAATTGGATTGGATCATATGTTGATAGAGAAGGCATAGAACAGAACGAACAAGTGCTCACTGCACTGGTTGACATGCATGCCAAGTGTGGGAATATGGAAGAGGCTTGTCATGTTTTTGAGAAGATTCCTCGGAAGGACGTTTTCTCTTACAGTGCAATAATCACAGGTCTTGCTTCTCATGGTCATGGTATTAAAGCGCTTGAGATTTTCCAGAGGATGCTGGCAGAAAACATCGAACCTGATCACATCACATTTGTTGGGGTATTGACTGCCTGTGGGCATGCAGGACTCGTTGAAGATGGAATGACCTTTTGGCAAAGCATGATTAAAGATTACAATATTCAGCCTGATAAAGATCACTATGCTTGCGTGGTTGATATGCTGGGACGTGCTGGGAAGCTTAACGAGGCACACAATTTAGTCAAGGGCATGCCTATGGGTCCACAGCCTGGAGCATTGGGCGCTTTGCTTGCAGCATGTAGAACATACGGAAACGTAGAGATTGCTGAAAGTATTGCTGAGAAGCTCTTCAATGTAAGTATTAGATTGTTATGGATTGCTTACAACCGGGTTAGTACATGGCCAGAGATAATTGTGCATTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

534

Amino Acids

58.93

Weight (kDa)

7.04

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 80 - 129 9.6e-07 PPR repeat family
PPR PF01535 157 - 183 9.9e-07 PPR repeat
PPR PF01535 217 - 247 2e-06 PPR repeat
PPR_2 PF13041 245 - 277 1.5e-06 PPR repeat family
PPR PF01535 248 - 276 7.9e-08 PPR repeat
PPR_2 PF13041 278 - 324 2.2e-14 PPR repeat family
PPR PF01535 280 - 309 1.9e-10 PPR repeat
PPR_long PF17177 280 - 374 7.4e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 377 - 425 2.1e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016330)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06640 FvH4_5g06640 FvH4_5g06640
malus_domestica MD06G1162200.v1.1 MD14G1167900.v1.1
prunus_persica Prupe.5G162800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0192051
rosa_laevigata RLG00000004405
rosa_multiflora Rmu_ssc0000421.1_g000037
rosa_roxburghii Rroxscaffold_3G00263330
rosa_rugosa Rorug06G0512800.1
rosa_samantha Rh7BG124700 Rh7CG127400 Rh7DG126200
rosa_wichuraiana Rw7G010480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AccB7I CCANNNNNTGG 1 cut(s) 1445
AccBSI CCGCTC 3 cut(s) 65, 126, 826
AccI GTMKAC 1 cut(s) 770
AccII CGCG 3 cut(s) 333, 335, 614
AccIII TCCGGA 1 cut(s) 903
AclWI GGATC 1 cut(s) 1015
AcoI YGGCCR 2 cut(s) 424, 1577
AcsI RAATTY 1 cut(s) 376
AcuI CTGAAG 1 cut(s) 119
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 1 cut(s) 1573
AfeI AGCGCT 1 cut(s) 1194
AfiI CCNNNNNNNGG 3 cut(s) 910, 1083, 1445
AgsI TTSAA 4 cut(s) 256, 407, 1292, 1528
AjiI CACGTC 1 cut(s) 1385
AjnI CCWGG 1 cut(s) 1444
AjuI GAANNNNNNNTTGG 2 cut(s) 1291, 1323
AluBI AGCT 4 cut(s) 77, 360, 1396, 1522
AluI AGCT 4 cut(s) 77, 360, 1396, 1522
Alw21I GWGCWC 1 cut(s) 1053
Alw26I GTCTC 1 cut(s) 703
AlwI GGATC 1 cut(s) 1015
Aor13HI TCCGGA 1 cut(s) 903
Aor51HI AGCGCT 1 cut(s) 1194
AoxI GGCC 5 cut(s) 344, 424, 878, 979, 1577
ApeKI GCWGC 1 cut(s) 1469
ApoI RAATTY 1 cut(s) 376
Asp700I GAANNNNTTC 1 cut(s) 1523
AspLEI GCGC 5 cut(s) 59, 335, 515, 1195, 1460
AspS9I GGNCC 3 cut(s) 418, 979, 1436
AsuC2I CCSGG 1 cut(s) 1565
AsuHPI GGTGA 2 cut(s) 16, 214
AvaII GGWCC 2 cut(s) 418, 1436
BaeGI GKGCMC 1 cut(s) 580
BalI TGGCCA 1 cut(s) 1579
BanI GGYRCC 1 cut(s) 56
BbsI GAAGAC 2 cut(s) 211, 287
Bbv12I GWGCWC 1 cut(s) 1053
BbvI GCAGC 1 cut(s) 1481
BccI CCATC 4 cut(s) 272, 301, 904, 1289
BceAI ACGGC 4 cut(s) 70, 371, 861, 966
BciT130I CCWGG 1 cut(s) 1446
BciVI GTATCC 1 cut(s) 854
BclI TGATCA 2 cut(s) 3, 1237
BcnI CCSGG 1 cut(s) 1565
BcoDI GTCTC 1 cut(s) 703
BfaI CTAG 1 cut(s) 705
BfmI CTRYAG 1 cut(s) 355
BfoI RGCGCY 3 cut(s) 60, 1196, 1461
BfuI GTATCC 1 cut(s) 854
BglI GCCNNNNNGGC 1 cut(s) 269
BisI GCNGC 5 cut(s) 60, 63, 427, 612, 1470
BlsI GCNGC 5 cut(s) 61, 64, 428, 613, 1471
Bme1390I CCNGG 2 cut(s) 1446, 1565
Bme18I GGWCC 2 cut(s) 418, 1436
BmgBI CACGTC 1 cut(s) 1385
BmgT120I GGNCC 3 cut(s) 418, 979, 1436
BmiI GGNNCC 2 cut(s) 58, 1437
BmrFI CCNGG 2 cut(s) 1446, 1565
BmsI GCATC 3 cut(s) 714, 925, 1203
BoxI GACNNNNGTC 1 cut(s) 20
BpiI GAAGAC 2 cut(s) 211, 287
BpmI CTGGAG 1 cut(s) 1467
Bpu10I CCTNAGC 3 cut(s) 151, 798, 822
BpuEI CTTGAG 1 cut(s) 1217
BpuMI CCSGG 1 cut(s) 1565
BsaBI GATNNNNATC 1 cut(s) 1350
BsaHI GRCGYC 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 703
BsaJI CCNNGG 4 cut(s) 300, 421, 612, 1124
BsaWI WCCGGW 2 cut(s) 460, 903
BsaXI ACNNNNNCTCC 2 cut(s) 868, 898
Bsc4I CCNNNNNNNGG 3 cut(s) 910, 1083, 1445
Bse1I ACTGG 1 cut(s) 1065
Bse8I GATNNNNATC 1 cut(s) 1350
BseAI TCCGGA 1 cut(s) 903
BseBI CCWGG 1 cut(s) 1446
BseDI CCNNGG 4 cut(s) 300, 421, 612, 1124
BseGI GGATG 8 cut(s) 34, 697, 715, 729, 808, 915, 940, 1218
BseJI GATNNNNATC 1 cut(s) 1350
BseLI CCNNNNNNNGG 3 cut(s) 910, 1083, 1445
BseMII CTCAG 2 cut(s) 813, 1506
BseNI ACTGG 1 cut(s) 1065
BseRI GAGGAG 4 cut(s) 178, 181, 184, 603
BseSI GKGCMC 1 cut(s) 580
BseXI GCAGC 1 cut(s) 1481
BseYI CCCAGC 2 cut(s) 1378, 1388
BsgI GTGCAG 1 cut(s) 1041
Bsh1236I CGCG 3 cut(s) 333, 335, 614
BshFI GGCC 5 cut(s) 346, 426, 880, 981, 1579
BshNI GGYRCC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 1053
BsiSI CCGG 5 cut(s) 461, 728, 904, 932, 1564
BslFI GGGAC 1 cut(s) 1395
BslI CCNNNNNNNGG 3 cut(s) 910, 1083, 1445
BsmAI GTCTC 1 cut(s) 703
BsmFI GGGAC 1 cut(s) 1395
BsmI GAATGC 4 cut(s) 475, 636, 664, 1594
BsnI GGCC 5 cut(s) 346, 426, 880, 981, 1579
Bso31I GGTCTC 1 cut(s) 703
Bsp1286I GDGCHC 2 cut(s) 580, 1053
Bsp13I TCCGGA 1 cut(s) 903
Bsp143I GATC 6 cut(s) 3, 957, 988, 1007, 1237, 1351
Bsp19I CCATGG 1 cut(s) 421
BspANI GGCC 5 cut(s) 346, 426, 880, 981, 1579
BspCNI CTCAG 2 cut(s) 814, 1507
BspEI TCCGGA 1 cut(s) 903
BspFNI CGCG 3 cut(s) 333, 335, 614
BspLI GGNNCC 2 cut(s) 58, 1437
BspPI GGATC 1 cut(s) 1015
BspQI GCTCTTC 1 cut(s) 1529
BspT107I GGYRCC 1 cut(s) 56
BspTNI GGTCTC 1 cut(s) 703
BsrBI CCGCTC 3 cut(s) 65, 126, 826
BsrI ACTGG 1 cut(s) 1065
BssECI CCNNGG 4 cut(s) 300, 421, 612, 1124
BssMI GATC 6 cut(s) 3, 957, 988, 1007, 1237, 1351
BssNAI GTATAC 1 cut(s) 771
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 421
Bst1107I GTATAC 1 cut(s) 771
Bst2UI CCWGG 1 cut(s) 1446
Bst4CI ACNGT 2 cut(s) 975, 1148
Bst6I CTCTTC 3 cut(s) 257, 1089, 1529
BstACI GRCGYC 1 cut(s) 57
BstC8I GCNNGC 7 cut(s) 79, 1074, 1218, 1278, 1363, 1427, 1467
BstDEI CTNAG 4 cut(s) 151, 798, 822, 1515
BstDSI CCRYGG 2 cut(s) 421, 612
BstEII GGTNACC 1 cut(s) 22
BstF5I GGATG 8 cut(s) 34, 697, 715, 729, 808, 915, 940, 1218
BstFNI CGCG 3 cut(s) 333, 335, 614
BstH2I RGCGCY 3 cut(s) 60, 1196, 1461
BstHHI GCGC 5 cut(s) 59, 335, 515, 1195, 1460
BstKTI GATC 6 cut(s) 6, 960, 991, 1010, 1240, 1354
BstMAI GTCTC 1 cut(s) 703
BstMBI GATC 6 cut(s) 3, 957, 988, 1007, 1237, 1351
BstMWI GCNNNNNNNGC 6 cut(s) 56, 152, 269, 992, 1457, 1466
BstNI CCWGG 1 cut(s) 1446
BstNSI RCATGY 6 cut(s) 584, 1072, 1076, 1280, 1429, 1476
BstPAI GACNNNNGTC 1 cut(s) 20
BstPI GGTNACC 1 cut(s) 22
BstSCI CCNGG 2 cut(s) 1444, 1563
BstSFI CTRYAG 1 cut(s) 355
BstSLI GKGCMC 1 cut(s) 580
BstUI CGCG 3 cut(s) 333, 335, 614
BstV1I GCAGC 1 cut(s) 1481
BstV2I GAAGAC 2 cut(s) 211, 287
BstZ17I GTATAC 1 cut(s) 771
BsuI GTATCC 1 cut(s) 854
BsuRI GGCC 5 cut(s) 346, 426, 880, 981, 1579
BtgI CCRYGG 2 cut(s) 421, 612
BtgZI GCGATG 3 cut(s) 69, 320, 677
BtrI CACGTC 1 cut(s) 1385
BtsCI GGATG 8 cut(s) 34, 697, 715, 729, 808, 915, 940, 1218
BtsI GCAGTG 1 cut(s) 1053
BtsIMutI CAGTG 3 cut(s) 1053, 1058, 1153
Cac8I GCNNGC 7 cut(s) 79, 1074, 1218, 1278, 1363, 1427, 1467
CfoI GCGC 5 cut(s) 59, 335, 515, 1195, 1460
Cfr13I GGNCC 3 cut(s) 418, 979, 1436
Cfr42I CCGCGG 1 cut(s) 615
CseI GACGC 1 cut(s) 144
Csp6I GTAC 1 cut(s) 1572
CspCI CAANNNNNGTGG 2 cut(s) 744, 779
CviQI GTAC 1 cut(s) 1572
DdeI CTNAG 4 cut(s) 151, 798, 822, 1515
DinI GGCGCC 1 cut(s) 58
DpnI GATC 6 cut(s) 5, 959, 990, 1009, 1239, 1353
DpnII GATC 6 cut(s) 3, 957, 988, 1007, 1237, 1351
EaeI YGGCCR 2 cut(s) 424, 1577
Eam1104I CTCTTC 3 cut(s) 257, 1089, 1529
EarI CTCTTC 3 cut(s) 257, 1089, 1529
EciI GGCGGA 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 421
Eco147I AGGCCT 1 cut(s) 346
Eco31I GGTCTC 1 cut(s) 703
Eco32I GATATC 1 cut(s) 855
Eco47I GGWCC 2 cut(s) 418, 1436
Eco47III AGCGCT 1 cut(s) 1194
Eco57I CTGAAG 1 cut(s) 119
Eco91I GGTNACC 1 cut(s) 22
EcoO65I GGTNACC 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 1444
EcoRV GATATC 1 cut(s) 855
EcoT14I CCWWGG 1 cut(s) 421
EcoT22I ATGCAT 1 cut(s) 1074
EgeI GGCGCC 1 cut(s) 58
EheI GGCGCC 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 421
FaqI GGGAC 1 cut(s) 1395
FauI CCCGC 1 cut(s) 328
FauNDI CATATG 1 cut(s) 1012
FbaI TGATCA 2 cut(s) 3, 1237
FblI GTMKAC 1 cut(s) 770
Fnu4HI GCNGC 5 cut(s) 60, 63, 427, 612, 1470
FokI GGATG 8 cut(s) 21, 704, 722, 736, 815, 922, 947, 1225
Fsp4HI GCNGC 5 cut(s) 60, 63, 427, 612, 1470
FspBI CTAG 1 cut(s) 705
GlaI GCGC 5 cut(s) 58, 334, 514, 1194, 1459
GluI GCNGC 5 cut(s) 60, 63, 427, 612, 1470
GsaI CCCAGC 2 cut(s) 1382, 1392
GsuI CTGGAG 1 cut(s) 1467
HaeII RGCGCY 3 cut(s) 60, 1196, 1461
HaeIII GGCC 5 cut(s) 346, 426, 880, 981, 1579
HapII CCGG 5 cut(s) 461, 728, 904, 932, 1564
HgaI GACGC 1 cut(s) 144
HhaI GCGC 5 cut(s) 59, 335, 515, 1195, 1460
Hin1I GRCGYC 1 cut(s) 57
Hin6I GCGC 5 cut(s) 57, 333, 513, 1193, 1458
HinP1I GCGC 5 cut(s) 57, 333, 513, 1193, 1458
HincII GTYRAC 1 cut(s) 1066
HindII GTYRAC 1 cut(s) 1066
HindIII AAGCTT 2 cut(s) 75, 1394
HinfI GANTC 3 cut(s) 31, 1120, 1284
HpaII CCGG 5 cut(s) 461, 728, 904, 932, 1564
HphI GGTGA 2 cut(s) 16, 214
Hpy166II GTNNAC 5 cut(s) 159, 771, 942, 1066, 1439
Hpy188I TCNGA 3 cut(s) 11, 301, 1128
Hpy188III TCNNGA 4 cut(s) 277, 858, 904, 1207
Hpy8I GTNNAC 5 cut(s) 159, 771, 942, 1066, 1439
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 3 cut(s) 514, 1019, 1123
HpyCH4III ACNGT 2 cut(s) 975, 1148
HpyCH4IV ACGT 3 cut(s) 1134, 1384, 1491
HpyCH4V TGCA 8 cut(s) 634, 965, 1058, 1072, 1151, 1280, 1469, 1594
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 152, 269, 992, 1457, 1466
HpyF3I CTNAG 4 cut(s) 151, 798, 822, 1515
HpySE526I ACGT 3 cut(s) 1134, 1384, 1491
Hsp92I GRCGYC 1 cut(s) 57
HspAI GCGC 5 cut(s) 57, 333, 513, 1193, 1458
KasI GGCGCC 1 cut(s) 56
Kpn2I TCCGGA 1 cut(s) 903
Ksp22I TGATCA 2 cut(s) 3, 1237
KspI CCGCGG 1 cut(s) 615
Kzo9I GATC 6 cut(s) 3, 957, 988, 1007, 1237, 1351
LguI GCTCTTC 1 cut(s) 1529
LmnI GCTCC 3 cut(s) 93, 131, 1448
Lsp1109I GCAGC 1 cut(s) 1481
LweI GCATC 3 cut(s) 714, 925, 1203
MaeI CTAG 1 cut(s) 705
MaeII ACGT 3 cut(s) 1134, 1384, 1491
MaeIII GTNAC 1 cut(s) 22
MalI GATC 6 cut(s) 5, 959, 990, 1009, 1239, 1353
MbiI CCGCTC 3 cut(s) 65, 126, 826
MboI GATC 6 cut(s) 3, 957, 988, 1007, 1237, 1351
MboII GAAGA 7 cut(s) 211, 244, 292, 1106, 1129, 1304, 1516
MhlI GDGCHC 2 cut(s) 580, 1053
MlsI TGGCCA 1 cut(s) 1579
MluCI AATT 4 cut(s) 376, 997, 1411, 1587
MluNI TGGCCA 1 cut(s) 1579
Mly113I GGCGCC 1 cut(s) 57
MlyI GAGTC 1 cut(s) 1278
MmeI TCCRAC 2 cut(s) 486, 821
Mox20I TGGCCA 1 cut(s) 1579
Mph1103I ATGCAT 1 cut(s) 1074
MroI TCCGGA 1 cut(s) 903
MroXI GAANNNNTTC 1 cut(s) 1523
MscI TGGCCA 1 cut(s) 1579
MseI TTAA 4 cut(s) 435, 1188, 1323, 1398
MslI CAYNNNNRTG 2 cut(s) 1179, 1430
Msp20I TGGCCA 1 cut(s) 1579
MspA1I CMGCKG 1 cut(s) 614
MspI CCGG 5 cut(s) 461, 728, 904, 932, 1564
MspR9I CCNGG 2 cut(s) 1446, 1565
Mva1269I GAATGC 4 cut(s) 475, 636, 664, 1594
MvaI CCWGG 1 cut(s) 1446
MvnI CGCG 3 cut(s) 333, 335, 614
MwoI GCNNNNNNNGC 6 cut(s) 56, 152, 269, 992, 1457, 1466
NarI GGCGCC 1 cut(s) 57
NciI CCSGG 1 cut(s) 1565
NcoI CCATGG 1 cut(s) 421
NdeI CATATG 1 cut(s) 1012
NdeII GATC 6 cut(s) 3, 957, 988, 1007, 1237, 1351
NlaIV GGNNCC 2 cut(s) 58, 1437
NmeAIII GCCGAG 1 cut(s) 680
NmuCI GTSAC 1 cut(s) 22
NsiI ATGCAT 1 cut(s) 1074
NspI RCATGY 6 cut(s) 584, 1072, 1076, 1280, 1429, 1476
PaeI GCATGC 3 cut(s) 1076, 1280, 1429
PceI AGGCCT 1 cut(s) 346
PciSI GCTCTTC 1 cut(s) 1529
PctI GAATGC 4 cut(s) 475, 636, 664, 1594
PdmI GAANNNNTTC 1 cut(s) 1523
PfeI GAWTC 2 cut(s) 31, 1120
PflMI CCANNNNNTGG 1 cut(s) 1445
PkrI GCNGC 5 cut(s) 61, 64, 428, 613, 1471
PleI GAGTC 1 cut(s) 1278
PluTI GGCGCC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 1278
PshAI GACNNNNGTC 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 1444
PspEI GGTNACC 1 cut(s) 22
PspFI CCCAGC 2 cut(s) 1378, 1388
PspGI CCWGG 1 cut(s) 1444
PspN4I GGNNCC 2 cut(s) 58, 1437
PspPI GGNCC 3 cut(s) 418, 979, 1436
RsaI GTAC 1 cut(s) 1573
RsaNI GTAC 1 cut(s) 1572
RseI CAYNNNNRTG 2 cut(s) 1179, 1430
SacII CCGCGG 1 cut(s) 615
SapI GCTCTTC 1 cut(s) 1529
SaqAI TTAA 4 cut(s) 435, 1188, 1323, 1398
SatI GCNGC 5 cut(s) 60, 63, 427, 612, 1470
Sau3AI GATC 6 cut(s) 3, 957, 988, 1007, 1237, 1351
Sau96I GGNCC 3 cut(s) 418, 979, 1436
SchI GAGTC 1 cut(s) 1278
ScrFI CCNGG 2 cut(s) 1446, 1565
SduI GDGCHC 2 cut(s) 580, 1053
SfaNI GCATC 3 cut(s) 714, 925, 1203
SfcI CTRYAG 1 cut(s) 355
SfoI GGCGCC 1 cut(s) 58
Sfr303I CCGCGG 1 cut(s) 615
SgrBI CCGCGG 1 cut(s) 615
SinI GGWCC 2 cut(s) 418, 1436
SmiMI CAYNNNNRTG 2 cut(s) 1179, 1430
SmlI CTYRAG 1 cut(s) 1196
SmoI CTYRAG 1 cut(s) 1196
SphI GCATGC 3 cut(s) 1076, 1280, 1429
Sse9I AATT 4 cut(s) 376, 997, 1411, 1587
SseBI AGGCCT 1 cut(s) 346
SspDI GGCGCC 1 cut(s) 56
SspI AATATT 1 cut(s) 1336
SspMI CTAG 1 cut(s) 705
StuI AGGCCT 1 cut(s) 346
StyD4I CCNGG 2 cut(s) 1444, 1563
StyI CCWWGG 1 cut(s) 421
TaaI ACNGT 2 cut(s) 975, 1148
TaiI ACGT 3 cut(s) 1137, 1387, 1494
TaqI TCGA 4 cut(s) 278, 467, 624, 1230
TasI AATT 4 cut(s) 376, 997, 1411, 1587
TatI WGTACW 1 cut(s) 1571
TauI GCSGC 4 cut(s) 62, 65, 429, 614
TfiI GAWTC 2 cut(s) 31, 1120
Tru1I TTAA 4 cut(s) 435, 1188, 1323, 1398
Tru9I TTAA 4 cut(s) 435, 1188, 1323, 1398
TscAI CASTG 3 cut(s) 1060, 1065, 1153
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 1 cut(s) 1469
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 2 cut(s) 546, 828
TspGWI ACGGA 2 cut(s) 532, 1500
TspRI CASTG 3 cut(s) 1060, 1065, 1153
Van91I CCANNNNNTGG 1 cut(s) 1445
VpaK11BI GGWCC 2 cut(s) 418, 1436
XapI RAATTY 1 cut(s) 376
XceI RCATGY 6 cut(s) 584, 1072, 1076, 1280, 1429, 1476
XcmI CCANNNNNNNNNTGG 1 cut(s) 592
XmiI GTMKAC 1 cut(s) 770
XmnI GAANNNNTTC 1 cut(s) 1523
XspI CTAG 1 cut(s) 705
Zsp2I ATGCAT 1 cut(s) 1074
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.