Rh7CG127400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016330
Physical Location & Seq
Reverse (-)
9898943 .. 9900783
1841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG127400.1

Sequence Viewer

Length: 1401 bp
ATGATCAGAGCGACAACGGTCACCAAGAACCATCCGAACAACAAAGCCGACAGCTCCGCCGCTCTGCTAAAAGCTTGCTCATCGCTCCGCCGCCTGAAGCAAATCCATGCCCACATTCTCCGCTCCAATCTCCACCGCAACGCCTCCTTAGCCTCCACTCTCATCTCTCTCTACGCCTCTCTCTCCTCATCCTCCCCTCGCTACACCCACCATGTCTTCGCCTCTTTCCCCAACCCAAACCTCTCTCTCTTCAACCACGCCATCAGGGCTTTCTCGAAGACCCACTCGCTCTGTTCCGAGGCGATGGTATTGTATAACCAAATGGTTCGCGCGGGAATGAGGCCTGATAACTATAGCTTCCCTTTTATGCTAAATTCGTGTGCCGCGAGAAGTGATATTTTTCAAGGGGTTGAGGTCCATGGCCGCATTGTTAAAACAGGGTTTGCGTTTTGTGTTCCGGTGTCGAATGCTTTGATTGATATGTATGGGAAATGTGGGGAGTTGGAGAGCGCACGGAAGGTGTTTGATGAAATGCGTGAAAGAGATGTTGTTTCGTATAATGCGGTTTTAGGGGCACATGCCAGAGGAGGTGTGGATATGGAGAGTGCCGCCGATTTGTTCGTGGGAATGCAGGGGAGAAATGCTATATCTTGGAATGCGATGATTGTGGGGTATGTAAATAGTGGGGATGTGGTCTCGGCTAGGGATGTGTTTGATAGGATGCCGGAGAGGAATGTTGTTTCTTGGACTACAATGCTGGTGGGGTATACTAAAAATGGGTTTATGGATATGGCTAAGGATGTTTTTGATGAAATGCCTGAGCGGAGTTTGATTTGTTGGACGGCTATGATATCAGGATACTCGCAAAATGGGAGGCCAAGTGAAGCACTTTCACTTTTCCGGAGAATGGAGAAATCAGGGGTAAACCCGGATGCGTTTACCATGACAGCGTTGATCTCTGCATTGGCACAGTTGGGCCGTGCTGATCTGGCAAATTGGATTGGATCATATGTTGATCGAGAAGGCATAGAACAGAATGAACAAGTGCTCACTGCACTGGTTGACATGCATGCCAAGTGTGGGAATATGGAAGAGGCTTGTCGTGTTTTTGAGAAGATTCCTTGGAAGGATGTTTTCTCCTACAGTGCAATAATCACAGGTCTTGCTTCTCATGGTCATGGGATTAAAGCGCTTGAGATCTTCCGGAGGATGCTGGCAGAAAACATCAAACCTGATCACGTCACATTTGTTGGGGTATTGACTGCCTGTGGCCATGCAGGACTCGTCGAAGATGGAATGACCTATTGGGAAAGCATGATTAAAGATTACAATATTCAGCCTGTGCAAGTGTTAGGTTGTTATGGATTACTTACAACCGGGTTAGTGCATGGCCAGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

466

Amino Acids

51.55

Weight (kDa)

8.01

Isoelectric Point (pI)

33.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 79 - 128 7e-07 PPR repeat family
PPR PF01535 156 - 183 8.4e-07 PPR repeat
PPR PF01535 216 - 246 1.7e-06 PPR repeat
PPR_2 PF13041 244 - 276 1.3e-06 PPR repeat family
PPR PF01535 247 - 275 6.7e-08 PPR repeat
PPR_2 PF13041 277 - 323 5.1e-14 PPR repeat family
PPR PF01535 279 - 308 1.6e-10 PPR repeat
PPR_long PF17177 279 - 372 9.4e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 376 - 424 8.3e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016330)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06640 FvH4_5g06640 FvH4_5g06640
malus_domestica MD06G1162200.v1.1 MD14G1167900.v1.1
prunus_persica Prupe.5G162800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0192051
rosa_laevigata RLG00000004405
rosa_multiflora Rmu_ssc0000421.1_g000037
rosa_roxburghii Rroxscaffold_3G00263330
rosa_rugosa Rorug06G0512800.1
rosa_samantha Rh7BG124700 Rh7CG127400 Rh7DG126200
rosa_wichuraiana Rw7G010480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 62, 123, 823
AccI GTMKAC 1 cut(s) 767
AccII CGCG 3 cut(s) 330, 332, 386
AccIII TCCGGA 2 cut(s) 900, 1203
AclWI GGATC 1 cut(s) 1012
AcoI YGGCCR 3 cut(s) 421, 1270, 1390
AcsI RAATTY 1 cut(s) 373
AcuI CTGAAG 1 cut(s) 116
AfeI AGCGCT 1 cut(s) 1191
AfiI CCNNNNNNNGG 2 cut(s) 907, 1080
AgsI TTSAA 2 cut(s) 253, 404
AjiI CACGTC 1 cut(s) 1240
AjuI GAANNNNNNNTTGG 2 cut(s) 1288, 1320
AluBI AGCT 3 cut(s) 54, 74, 357
AluI AGCT 3 cut(s) 54, 74, 357
Alw21I GWGCWC 1 cut(s) 1050
Alw26I GTCTC 1 cut(s) 700
AlwI GGATC 1 cut(s) 1012
Aor13HI TCCGGA 2 cut(s) 900, 1203
Aor51HI AGCGCT 1 cut(s) 1191
AoxI GGCC 6 cut(s) 341, 421, 875, 976, 1270, 1390
ApoI RAATTY 1 cut(s) 373
AspLEI GCGC 3 cut(s) 332, 512, 1192
AspS9I GGNCC 2 cut(s) 415, 976
AsuC2I CCSGG 2 cut(s) 929, 1378
AsuHPI GGTGA 1 cut(s) 13
AvaII GGWCC 1 cut(s) 415
BaeGI GKGCMC 1 cut(s) 577
BalI TGGCCA 2 cut(s) 1272, 1392
BbsI GAAGAC 2 cut(s) 208, 284
Bbv12I GWGCWC 1 cut(s) 1050
BccI CCATC 4 cut(s) 39, 269, 298, 1286
BceAI ACGGC 2 cut(s) 858, 963
BciVI GTATCC 1 cut(s) 851
BclI TGATCA 2 cut(s) 3, 1234
BcnI CCSGG 2 cut(s) 929, 1378
BcoDI GTCTC 1 cut(s) 700
BfaI CTAG 1 cut(s) 702
BfmI CTRYAG 2 cut(s) 352, 1141
BfoI RGCGCY 1 cut(s) 1193
BfuI GTATCC 1 cut(s) 851
BglI GCCNNNNNGGC 1 cut(s) 266
BglII AGATCT 1 cut(s) 1197
BisI GCNGC 5 cut(s) 60, 91, 384, 424, 609
BlsI GCNGC 5 cut(s) 61, 92, 385, 425, 610
Bme1390I CCNGG 2 cut(s) 929, 1378
Bme18I GGWCC 1 cut(s) 415
BmgBI CACGTC 1 cut(s) 1240
BmgT120I GGNCC 2 cut(s) 415, 976
BmrFI CCNGG 2 cut(s) 929, 1378
BmsI GCATC 3 cut(s) 711, 922, 1200
BoxI GACNNNNGTC 1 cut(s) 17
BpiI GAAGAC 2 cut(s) 208, 284
Bpu10I CCTNAGC 3 cut(s) 148, 795, 819
BpuEI CTTGAG 1 cut(s) 1214
BpuMI CCSGG 2 cut(s) 929, 1378
BsaI GGTCTC 1 cut(s) 700
BsaJI CCNNGG 3 cut(s) 297, 418, 1121
BsaWI WCCGGW 3 cut(s) 457, 900, 1203
BsaXI ACNNNNNCTCC 2 cut(s) 865, 895
Bsc4I CCNNNNNNNGG 2 cut(s) 907, 1080
Bse1I ACTGG 1 cut(s) 1062
BseAI TCCGGA 2 cut(s) 900, 1203
BseDI CCNNGG 3 cut(s) 297, 418, 1121
BseGI GGATG 9 cut(s) 31, 188, 694, 712, 726, 805, 937, 1135, 1215
BseLI CCNNNNNNNGG 2 cut(s) 907, 1080
BseMII CTCAG 1 cut(s) 810
BseNI ACTGG 1 cut(s) 1062
BseRI GAGGAG 2 cut(s) 175, 600
BseSI GKGCMC 1 cut(s) 577
BsgI GTGCAG 1 cut(s) 1038
Bsh1236I CGCG 3 cut(s) 330, 332, 386
BshFI GGCC 6 cut(s) 343, 423, 877, 978, 1272, 1392
BsiHKAI GWGCWC 1 cut(s) 1050
BsiSI CCGG 6 cut(s) 458, 725, 901, 929, 1204, 1377
BslI CCNNNNNNNGG 2 cut(s) 907, 1080
BsmAI GTCTC 1 cut(s) 700
BsmI GAATGC 3 cut(s) 472, 633, 661
BsnI GGCC 6 cut(s) 343, 423, 877, 978, 1272, 1392
Bso31I GGTCTC 1 cut(s) 700
Bsp1286I GDGCHC 2 cut(s) 577, 1050
Bsp13I TCCGGA 2 cut(s) 900, 1203
Bsp143I GATC 7 cut(s) 3, 954, 985, 1004, 1015, 1197, 1234
Bsp19I CCATGG 1 cut(s) 418
BspANI GGCC 6 cut(s) 343, 423, 877, 978, 1272, 1392
BspCNI CTCAG 1 cut(s) 811
BspEI TCCGGA 2 cut(s) 900, 1203
BspFNI CGCG 3 cut(s) 330, 332, 386
BspPI GGATC 1 cut(s) 1012
BspTNI GGTCTC 1 cut(s) 700
BsrBI CCGCTC 3 cut(s) 62, 123, 823
BsrI ACTGG 1 cut(s) 1062
BssECI CCNNGG 3 cut(s) 297, 418, 1121
BssMI GATC 7 cut(s) 3, 954, 985, 1004, 1015, 1197, 1234
BssNAI GTATAC 1 cut(s) 768
BssT1I CCWWGG 2 cut(s) 418, 1121
Bst1107I GTATAC 1 cut(s) 768
Bst4CI ACNGT 3 cut(s) 19, 972, 1145
Bst6I CTCTTC 2 cut(s) 254, 1086
BstC8I GCNNGC 3 cut(s) 76, 1071, 1215
BstDEI CTNAG 3 cut(s) 148, 795, 819
BstDSI CCRYGG 1 cut(s) 418
BstEII GGTNACC 1 cut(s) 19
BstF5I GGATG 9 cut(s) 31, 188, 694, 712, 726, 805, 937, 1135, 1215
BstFNI CGCG 3 cut(s) 330, 332, 386
BstH2I RGCGCY 1 cut(s) 1193
BstHHI GCGC 3 cut(s) 332, 512, 1192
BstKTI GATC 7 cut(s) 6, 957, 988, 1007, 1018, 1200, 1237
BstMAI GTCTC 1 cut(s) 700
BstMBI GATC 7 cut(s) 3, 954, 985, 1004, 1015, 1197, 1234
BstMWI GCNNNNNNNGC 3 cut(s) 149, 266, 989
BstNSI RCATGY 3 cut(s) 581, 1069, 1073
BstPAI GACNNNNGTC 1 cut(s) 17
BstPI GGTNACC 1 cut(s) 19
BstSCI CCNGG 2 cut(s) 927, 1376
BstSFI CTRYAG 2 cut(s) 352, 1141
BstSLI GKGCMC 1 cut(s) 577
BstUI CGCG 3 cut(s) 330, 332, 386
BstV2I GAAGAC 2 cut(s) 208, 284
BstX2I RGATCY 1 cut(s) 1197
BstYI RGATCY 1 cut(s) 1197
BstZ17I GTATAC 1 cut(s) 768
BsuI GTATCC 1 cut(s) 851
BsuRI GGCC 6 cut(s) 343, 423, 877, 978, 1272, 1392
BtgI CCRYGG 1 cut(s) 418
BtgZI GCGATG 3 cut(s) 66, 317, 674
BtrI CACGTC 1 cut(s) 1240
BtsCI GGATG 9 cut(s) 31, 188, 694, 712, 726, 805, 937, 1135, 1215
BtsI GCAGTG 1 cut(s) 1050
BtsIMutI CAGTG 3 cut(s) 1050, 1055, 1150
Cac8I GCNNGC 3 cut(s) 76, 1071, 1215
CfoI GCGC 3 cut(s) 332, 512, 1192
Cfr13I GGNCC 2 cut(s) 415, 976
CspCI CAANNNNNGTGG 2 cut(s) 741, 776
DdeI CTNAG 3 cut(s) 148, 795, 819
DpnI GATC 7 cut(s) 5, 956, 987, 1006, 1017, 1199, 1236
DpnII GATC 7 cut(s) 3, 954, 985, 1004, 1015, 1197, 1234
EaeI YGGCCR 3 cut(s) 421, 1270, 1390
Eam1104I CTCTTC 2 cut(s) 254, 1086
EarI CTCTTC 2 cut(s) 254, 1086
EciI GGCGGA 2 cut(s) 46, 77
Eco130I CCWWGG 2 cut(s) 418, 1121
Eco147I AGGCCT 1 cut(s) 343
Eco31I GGTCTC 1 cut(s) 700
Eco32I GATATC 1 cut(s) 852
Eco47I GGWCC 1 cut(s) 415
Eco47III AGCGCT 1 cut(s) 1191
Eco57I CTGAAG 1 cut(s) 116
Eco91I GGTNACC 1 cut(s) 19
EcoO65I GGTNACC 1 cut(s) 19
EcoRV GATATC 1 cut(s) 852
EcoT14I CCWWGG 2 cut(s) 418, 1121
EcoT22I ATGCAT 1 cut(s) 1071
ErhI CCWWGG 2 cut(s) 418, 1121
FauI CCCGC 1 cut(s) 325
FauNDI CATATG 1 cut(s) 1009
FbaI TGATCA 2 cut(s) 3, 1234
FblI GTMKAC 1 cut(s) 767
Fnu4HI GCNGC 5 cut(s) 60, 91, 384, 424, 609
FokI GGATG 9 cut(s) 18, 175, 701, 719, 733, 812, 944, 1142, 1222
Fsp4HI GCNGC 5 cut(s) 60, 91, 384, 424, 609
FspBI CTAG 1 cut(s) 702
GlaI GCGC 3 cut(s) 331, 511, 1191
GluI GCNGC 5 cut(s) 60, 91, 384, 424, 609
HaeII RGCGCY 1 cut(s) 1193
HaeIII GGCC 6 cut(s) 343, 423, 877, 978, 1272, 1392
HapII CCGG 6 cut(s) 458, 725, 901, 929, 1204, 1377
HhaI GCGC 3 cut(s) 332, 512, 1192
Hin6I GCGC 3 cut(s) 330, 510, 1190
HinP1I GCGC 3 cut(s) 330, 510, 1190
HincII GTYRAC 1 cut(s) 1063
HindII GTYRAC 1 cut(s) 1063
HindIII AAGCTT 1 cut(s) 72
HinfI GANTC 2 cut(s) 1117, 1281
HpaII CCGG 6 cut(s) 458, 725, 901, 929, 1204, 1377
HphI GGTGA 1 cut(s) 13
Hpy166II GTNNAC 4 cut(s) 768, 925, 939, 1063
Hpy188I TCNGA 3 cut(s) 8, 36, 298
Hpy188III TCNNGA 5 cut(s) 274, 855, 901, 1019, 1204
Hpy8I GTNNAC 4 cut(s) 768, 925, 939, 1063
Hpy99I CGWCG 1 cut(s) 1289
HpyAV CCTTC 3 cut(s) 511, 1016, 1120
HpyCH4III ACNGT 3 cut(s) 19, 972, 1145
HpyCH4IV ACGT 1 cut(s) 1239
HpyCH4V TGCA 8 cut(s) 631, 962, 1055, 1069, 1148, 1277, 1345, 1387
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 266, 989
HpyF3I CTNAG 3 cut(s) 148, 795, 819
HpySE526I ACGT 1 cut(s) 1239
HspAI GCGC 3 cut(s) 330, 510, 1190
Kpn2I TCCGGA 2 cut(s) 900, 1203
Ksp22I TGATCA 2 cut(s) 3, 1234
Kzo9I GATC 7 cut(s) 3, 954, 985, 1004, 1015, 1197, 1234
LmnI GCTCC 3 cut(s) 59, 90, 128
LweI GCATC 3 cut(s) 711, 922, 1200
MaeI CTAG 1 cut(s) 702
MaeII ACGT 1 cut(s) 1239
MaeIII GTNAC 2 cut(s) 19, 1240
MalI GATC 7 cut(s) 5, 956, 987, 1006, 1017, 1199, 1236
MbiI CCGCTC 3 cut(s) 62, 123, 823
MboI GATC 7 cut(s) 3, 954, 985, 1004, 1015, 1197, 1234
MboII GAAGA 7 cut(s) 208, 241, 289, 1103, 1126, 1192, 1301
MflI RGATCY 1 cut(s) 1197
MhlI GDGCHC 2 cut(s) 577, 1050
MlsI TGGCCA 2 cut(s) 1272, 1392
MluCI AATT 2 cut(s) 373, 994
MluNI TGGCCA 2 cut(s) 1272, 1392
MlyI GAGTC 1 cut(s) 1275
MmeI TCCRAC 2 cut(s) 483, 818
Mox20I TGGCCA 2 cut(s) 1272, 1392
Mph1103I ATGCAT 1 cut(s) 1071
MroI TCCGGA 2 cut(s) 900, 1203
MscI TGGCCA 2 cut(s) 1272, 1392
MseI TTAA 3 cut(s) 432, 1185, 1320
MslI CAYNNNNRTG 1 cut(s) 1176
Msp20I TGGCCA 2 cut(s) 1272, 1392
MspI CCGG 6 cut(s) 458, 725, 901, 929, 1204, 1377
MspR9I CCNGG 2 cut(s) 929, 1378
Mva1269I GAATGC 3 cut(s) 472, 633, 661
MvnI CGCG 3 cut(s) 330, 332, 386
MwoI GCNNNNNNNGC 3 cut(s) 149, 266, 989
NciI CCSGG 2 cut(s) 929, 1378
NcoI CCATGG 1 cut(s) 418
NdeI CATATG 1 cut(s) 1009
NdeII GATC 7 cut(s) 3, 954, 985, 1004, 1015, 1197, 1234
NmeAIII GCCGAG 1 cut(s) 677
NmuCI GTSAC 2 cut(s) 19, 1240
NsiI ATGCAT 1 cut(s) 1071
NspI RCATGY 3 cut(s) 581, 1069, 1073
PaeI GCATGC 1 cut(s) 1073
PceI AGGCCT 1 cut(s) 343
PcsI WCGNNNNNNNCGW 1 cut(s) 383
PctI GAATGC 3 cut(s) 472, 633, 661
PfeI GAWTC 1 cut(s) 1117
PkrI GCNGC 5 cut(s) 61, 92, 385, 425, 610
PleI GAGTC 1 cut(s) 1275
PpsI GAGTC 1 cut(s) 1275
PshAI GACNNNNGTC 1 cut(s) 17
PspEI GGTNACC 1 cut(s) 19
PspPI GGNCC 2 cut(s) 415, 976
PsuI RGATCY 1 cut(s) 1197
RseI CAYNNNNRTG 1 cut(s) 1176
SaqAI TTAA 3 cut(s) 432, 1185, 1320
SatI GCNGC 5 cut(s) 60, 91, 384, 424, 609
Sau3AI GATC 7 cut(s) 3, 954, 985, 1004, 1015, 1197, 1234
Sau96I GGNCC 2 cut(s) 415, 976
SchI GAGTC 1 cut(s) 1275
ScrFI CCNGG 2 cut(s) 929, 1378
SduI GDGCHC 2 cut(s) 577, 1050
SfaNI GCATC 3 cut(s) 711, 922, 1200
SfcI CTRYAG 2 cut(s) 352, 1141
SinI GGWCC 1 cut(s) 415
SmiMI CAYNNNNRTG 1 cut(s) 1176
SmlI CTYRAG 1 cut(s) 1193
SmoI CTYRAG 1 cut(s) 1193
SphI GCATGC 1 cut(s) 1073
Sse9I AATT 2 cut(s) 373, 994
SseBI AGGCCT 1 cut(s) 343
SspI AATATT 1 cut(s) 1333
SspMI CTAG 1 cut(s) 702
StuI AGGCCT 1 cut(s) 343
StyD4I CCNGG 2 cut(s) 927, 1376
StyI CCWWGG 2 cut(s) 418, 1121
TaaI ACNGT 3 cut(s) 19, 972, 1145
TaiI ACGT 1 cut(s) 1242
TaqI TCGA 4 cut(s) 275, 464, 1018, 1287
TasI AATT 2 cut(s) 373, 994
TauI GCSGC 5 cut(s) 62, 93, 386, 426, 611
TfiI GAWTC 1 cut(s) 1117
Tru1I TTAA 3 cut(s) 432, 1185, 1320
Tru9I TTAA 3 cut(s) 432, 1185, 1320
TscAI CASTG 3 cut(s) 1057, 1062, 1150
TseFI GTSAC 2 cut(s) 19, 1240
Tsp45I GTSAC 2 cut(s) 19, 1240
TspDTI ATGAA 3 cut(s) 543, 825, 1053
TspGWI ACGGA 1 cut(s) 529
TspRI CASTG 3 cut(s) 1057, 1062, 1150
VpaK11BI GGWCC 1 cut(s) 415
XapI RAATTY 1 cut(s) 373
XceI RCATGY 3 cut(s) 581, 1069, 1073
XcmI CCANNNNNNNNNTGG 1 cut(s) 589
XmiI GTMKAC 1 cut(s) 767
XspI CTAG 1 cut(s) 702
Zsp2I ATGCAT 1 cut(s) 1071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.