Rh7DG126200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0016330
Physical Location & Seq
Reverse (-)
10646698 .. 10648555
1858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG126200.1

Sequence Viewer

Length: 747 bp
ATGATCATCAGAGCGACAACGGTCACCAAGAACCATCCGAACAATAAAGCCGACGGCGCCGCCGCTCTGCTAAAAGCTTGCTCATCGCTCCGCCGCCTGAAGCAAATCCACGCCCACATTCTCCGCTCCAATCTCCACGGCAACGCCTCCTTAGCCTCCACTCTCATCTCTCTCTACGCCTCTCTCTCCCCATCCTCCCCTCGCTACACCCACCATGTCTTCACCTCTTTCCCCAACCCAAACCTCTCTCTCTTCAACCACGCCATCAGGGCTTTCTCGAAGACCCACTCGCTCTGTTCCGAGGCGATGGTATTGTATAACCAAATGGTTCGCGCGGGAATGAGGCCTGATAACTATAGCTACCCTTTTATGCTAAATTCGTGTGCCGCGAGAAGTGATATTTTTCAAGGGGTTGAGGTCCATGGCCGCATTGTTAAAACGGGGTTTGGGTTTTGTGTTCCGGTGTCGAATGCTTTGATTGATATGTATGGGAAATGTGGGGAGTTGGAGACCGCACGGAAGGTGTTTGATGAAATGCGTGAAAGAGATGTTGTTTCATATAATGCGGTTTTAGGGGGACATGCCAGAGGAGGTGTGGATATGGAGAGTGCCGCCGATTTGTTCGAGGGAATGCAGGGGAGAAATGCTATATCTTGGAATGCGATGATTGTGGGTGCAAGTGTTAGGTTGTTATGGATTACTTACAACCGGGTTAGTGCATGGCCAGAGATAATTGTGCATTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

248

Amino Acids

27.36

Weight (kDa)

9.42

Isoelectric Point (pI)

33.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 80 - 129 6e-08 PPR repeat family
PPR PF01535 157 - 184 6e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016330)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06640 FvH4_5g06640 FvH4_5g06640
malus_domestica MD06G1162200.v1.1 MD14G1167900.v1.1
prunus_persica Prupe.5G162800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0192051
rosa_laevigata RLG00000004405
rosa_multiflora Rmu_ssc0000421.1_g000037
rosa_roxburghii Rroxscaffold_3G00263330
rosa_rugosa Rorug06G0512800.1
rosa_samantha Rh7BG124700 Rh7CG127400 Rh7DG126200
rosa_wichuraiana Rw7G010480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AccBSI CCGCTC 2 cut(s) 65, 126
AccII CGCG 3 cut(s) 333, 335, 389
AcoI YGGCCR 2 cut(s) 424, 722
AcsI RAATTY 1 cut(s) 376
AcuI CTGAAG 1 cut(s) 119
AcyI GRCGYC 1 cut(s) 57
AgsI TTSAA 2 cut(s) 256, 407
AluBI AGCT 2 cut(s) 77, 360
AluI AGCT 2 cut(s) 77, 360
Alw26I GTCTC 1 cut(s) 503
AoxI GGCC 3 cut(s) 344, 424, 722
ApoI RAATTY 1 cut(s) 376
AspLEI GCGC 2 cut(s) 59, 335
AspS9I GGNCC 1 cut(s) 418
AsuC2I CCSGG 1 cut(s) 710
AsuHPI GGTGA 2 cut(s) 16, 214
AvaII GGWCC 1 cut(s) 418
BalI TGGCCA 1 cut(s) 724
BanI GGYRCC 1 cut(s) 56
BbsI GAAGAC 2 cut(s) 211, 287
BccI CCATC 4 cut(s) 42, 199, 272, 301
BceAI ACGGC 2 cut(s) 70, 154
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 710
BcoDI GTCTC 1 cut(s) 503
BfmI CTRYAG 1 cut(s) 355
BfoI RGCGCY 1 cut(s) 60
BglI GCCNNNNNGGC 1 cut(s) 269
BisI GCNGC 6 cut(s) 60, 63, 94, 387, 427, 612
BlsI GCNGC 6 cut(s) 61, 64, 95, 388, 428, 613
Bme1390I CCNGG 1 cut(s) 710
Bme18I GGWCC 1 cut(s) 418
BmgT120I GGNCC 1 cut(s) 418
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 710
BoxI GACNNNNGTC 1 cut(s) 20
BpiI GAAGAC 2 cut(s) 211, 287
Bpu10I CCTNAGC 1 cut(s) 151
BpuMI CCSGG 1 cut(s) 710
BsaHI GRCGYC 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 503
BsaJI CCNNGG 3 cut(s) 136, 300, 421
BsaWI WCCGGW 1 cut(s) 460
BseDI CCNNGG 3 cut(s) 136, 300, 421
BseGI GGATG 2 cut(s) 34, 191
BseRI GAGGAG 1 cut(s) 603
Bsh1236I CGCG 3 cut(s) 333, 335, 389
BshFI GGCC 3 cut(s) 346, 426, 724
BshNI GGYRCC 1 cut(s) 56
BsiSI CCGG 2 cut(s) 461, 709
BslFI GGGAC 1 cut(s) 591
BsmAI GTCTC 1 cut(s) 503
BsmFI GGGAC 1 cut(s) 591
BsmI GAATGC 4 cut(s) 475, 636, 664, 739
BsnI GGCC 3 cut(s) 346, 426, 724
Bso31I GGTCTC 1 cut(s) 503
Bsp143I GATC 1 cut(s) 3
Bsp19I CCATGG 1 cut(s) 421
BspANI GGCC 3 cut(s) 346, 426, 724
BspFNI CGCG 3 cut(s) 333, 335, 389
BspLI GGNNCC 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 56
BspTNI GGTCTC 1 cut(s) 503
BsrBI CCGCTC 2 cut(s) 65, 126
BssECI CCNNGG 3 cut(s) 136, 300, 421
BssMI GATC 1 cut(s) 3
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 421
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 257
BstACI GRCGYC 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 151
BstDSI CCRYGG 2 cut(s) 136, 421
BstEII GGTNACC 1 cut(s) 22
BstF5I GGATG 2 cut(s) 34, 191
BstFNI CGCG 3 cut(s) 333, 335, 389
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 2 cut(s) 59, 335
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 503
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 3 cut(s) 56, 152, 269
BstNSI RCATGY 1 cut(s) 584
BstPAI GACNNNNGTC 1 cut(s) 20
BstPI GGTNACC 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 708
BstSFI CTRYAG 1 cut(s) 355
BstUI CGCG 3 cut(s) 333, 335, 389
BstV2I GAAGAC 2 cut(s) 211, 287
BsuRI GGCC 3 cut(s) 346, 426, 724
BtgI CCRYGG 2 cut(s) 136, 421
BtgZI GCGATG 3 cut(s) 69, 320, 677
BtsCI GGATG 2 cut(s) 34, 191
Cac8I GCNNGC 1 cut(s) 79
CfoI GCGC 2 cut(s) 59, 335
Cfr13I GGNCC 1 cut(s) 418
CviAII CATG 4 cut(s) 215, 422, 581, 720
CviJI RGCY 8 cut(s) 50, 77, 155, 272, 346, 360, 426, 724
CviKI_1 RGCY 8 cut(s) 50, 77, 155, 272, 346, 360, 426, 724
DdeI CTNAG 1 cut(s) 151
DinI GGCGCC 1 cut(s) 58
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
EaeI YGGCCR 2 cut(s) 424, 722
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
EciI GGCGGA 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 421
Eco147I AGGCCT 1 cut(s) 346
Eco31I GGTCTC 1 cut(s) 503
Eco47I GGWCC 1 cut(s) 418
Eco57I CTGAAG 1 cut(s) 119
Eco91I GGTNACC 1 cut(s) 22
EcoO65I GGTNACC 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 421
EgeI GGCGCC 1 cut(s) 58
EheI GGCGCC 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 421
FaeI CATG 4 cut(s) 218, 425, 584, 723
FaqI GGGAC 1 cut(s) 591
FatI CATG 4 cut(s) 214, 421, 580, 719
FauI CCCGC 1 cut(s) 328
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 6 cut(s) 60, 63, 94, 387, 427, 612
FokI GGATG 2 cut(s) 21, 178
Fsp4HI GCNGC 6 cut(s) 60, 63, 94, 387, 427, 612
GlaI GCGC 2 cut(s) 58, 334
GluI GCNGC 6 cut(s) 60, 63, 94, 387, 427, 612
HaeII RGCGCY 1 cut(s) 60
HaeIII GGCC 3 cut(s) 346, 426, 724
HapII CCGG 2 cut(s) 461, 709
HhaI GCGC 2 cut(s) 59, 335
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 4 cut(s) 218, 425, 584, 723
Hin6I GCGC 2 cut(s) 57, 333
HinP1I GCGC 2 cut(s) 57, 333
HindIII AAGCTT 1 cut(s) 75
HpaII CCGG 2 cut(s) 461, 709
HphI GGTGA 2 cut(s) 16, 214
Hpy188I TCNGA 3 cut(s) 11, 39, 301
Hpy188III TCNNGA 1 cut(s) 277
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 514
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 4 cut(s) 634, 677, 719, 739
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 152, 269
HpyF3I CTNAG 1 cut(s) 151
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 4 cut(s) 218, 425, 584, 723
HspAI GCGC 2 cut(s) 57, 333
KasI GGCGCC 1 cut(s) 56
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 2 cut(s) 93, 131
LpnPI CCDG 8 cut(s) 110, 253, 360, 474, 598, 620, 722, 738
MaeIII GTNAC 1 cut(s) 22
MalI GATC 1 cut(s) 5
MbiI CCGCTC 2 cut(s) 65, 126
MboI GATC 1 cut(s) 3
MboII GAAGA 3 cut(s) 211, 244, 292
MlsI TGGCCA 1 cut(s) 724
MluCI AATT 2 cut(s) 376, 732
MluNI TGGCCA 1 cut(s) 724
Mly113I GGCGCC 1 cut(s) 57
MmeI TCCRAC 1 cut(s) 486
Mox20I TGGCCA 1 cut(s) 724
MscI TGGCCA 1 cut(s) 724
MseI TTAA 1 cut(s) 435
Msp20I TGGCCA 1 cut(s) 724
MspI CCGG 2 cut(s) 461, 709
MspR9I CCNGG 1 cut(s) 710
Mva1269I GAATGC 4 cut(s) 475, 636, 664, 739
MvnI CGCG 3 cut(s) 333, 335, 389
MwoI GCNNNNNNNGC 3 cut(s) 56, 152, 269
NarI GGCGCC 1 cut(s) 57
NciI CCSGG 1 cut(s) 710
NcoI CCATGG 1 cut(s) 421
NdeII GATC 1 cut(s) 3
NlaIII CATG 4 cut(s) 218, 425, 584, 723
NlaIV GGNNCC 1 cut(s) 58
NmuCI GTSAC 1 cut(s) 22
NspI RCATGY 1 cut(s) 584
PceI AGGCCT 1 cut(s) 346
PcsI WCGNNNNNNNCGW 1 cut(s) 386
PctI GAATGC 4 cut(s) 475, 636, 664, 739
PkrI GCNGC 6 cut(s) 61, 64, 95, 388, 428, 613
PluTI GGCGCC 1 cut(s) 60
PshAI GACNNNNGTC 1 cut(s) 20
PspEI GGTNACC 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 1 cut(s) 418
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 6 cut(s) 60, 63, 94, 387, 427, 612
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 418
ScrFI CCNGG 1 cut(s) 710
SetI ASST 8 cut(s) 79, 227, 246, 362, 420, 525, 595, 689
SfcI CTRYAG 1 cut(s) 355
SfoI GGCGCC 1 cut(s) 58
SinI GGWCC 1 cut(s) 418
Sse9I AATT 2 cut(s) 376, 732
SseBI AGGCCT 1 cut(s) 346
SspDI GGCGCC 1 cut(s) 56
StuI AGGCCT 1 cut(s) 346
StyD4I CCNGG 1 cut(s) 708
StyI CCWWGG 1 cut(s) 421
TaaI ACNGT 1 cut(s) 22
TaqI TCGA 3 cut(s) 278, 467, 624
TasI AATT 2 cut(s) 376, 732
TauI GCSGC 6 cut(s) 62, 65, 96, 389, 429, 614
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TseFI GTSAC 1 cut(s) 22
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 2 cut(s) 546, 546
TspGWI ACGGA 1 cut(s) 532
VpaK11BI GGWCC 1 cut(s) 418
XapI RAATTY 1 cut(s) 376
XceI RCATGY 1 cut(s) 584
XcmI CCANNNNNNNNNTGG 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.