Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008045

Physical Location & Seq

Genomic Coordinates Forward (+)

4102771 .. 4104433

Gene Structure 1663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g06921.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCGAAGACTGGGCAAAGCTCTCTCAGAGTGAGAAGAATGGAGGAGAAGGCAAGCGTCCGTGTTCTAATCCCCAAGCTCATTCTCCAAAAGAACGACGAACCCGCCGGCCTCCGATGGCTGATCGGATCCTCATTTTTACCGCCACTCACTGTCGTCTCCGCACTCAAATGCATCCACACCGATTCCTCCTCCTCCTCATCTTCAGACTACTCCAGAGAATCAGAAGAGCTTTGGACGTTACTGCCGAAAGGATTCCACGTCATCGGAGCTTTAGTTGTGGCCGATTCCGACGAAGAGAAGCGCGGCGGCGAGGCCGTTGCGGCGGCGAGAAGGTTACGGAAGCTAATGTGCGGCGGAAGTGAGAGAATGGATGAGCAGGGAGTAATTGGAGCCGTTGCGGAGTCTAGAGGTGGAGGTATTGGGTTTTACTTGTCGAAATCGGAGAGTTGTGAGAGGTTTGAGTGTGTTGATGTGGTGTATGATGATGATCCGGAGAGGTTTGTTTGGGAGAGGGGTTGTTTGATTCGGTGTGAGCTTCCTTTGAAGCTGCCGATTTACTATCCAGTAAATAAGCCTTCTGATACCGAACAGATCATGCAACGTGCAATTGAAGCAGTTGTTGCCAAGTTCAAAGATCCAAAGGCTGCATACCTGGTGGAAACTTTAAGCAAAAATTCATCTGAAGTACCTCAGCCTGTCATCATTCGTGGTGGAGATTTGGATTTTGACATGGATCTATCAGATGTCAAACTTTTGGGTGAAAGCGGCCATGATTCTGATGCTAAGTTCTTGCCATGTTCTCATTTTTGTTTGGAGAGTGAAAAAGACTCCCGCGAGTATTCTGCTGAGCTCTGGAAGAAGTTAGAATGTTGGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0016787 GO:0019538 GO:0019783 GO:0043170 GO:0044238 GO:0070011 GO:0071567 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C78

Protein Analysis

294

Amino Acids

32.64

Weight (kDa)

5.2

Isoelectric Point (pI)

61.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48380 AT3G48380 AT3G48380
fragaria_vesca	FvH4_5g06921 FvH4_5g06950 FvH4_5g06990 FvH4_5g06990 FvH4_5g06990
malus_domestica	MD06G1160100.v1.1 MD14G1166100.v1.1
prunus_persica	Prupe.5G160400_v2.0.a1
pyrus_communis	pycom14g13880
rosa_chinensis	RchiOBHm_Chr7g0191691
rosa_laevigata	RLG00000004433
rosa_multiflora	Rmu_sc0001123.1_g000012 Rmu_sc0018746.1_g000004
rosa_roxburghii	Rroxscaffold_157G00438510 Rroxscaffold_3G00263640
rosa_rugosa	Rorug06G0511000
rosa_samantha	Rh7AG120200 Rh7BG122300 Rh7CG124900 Rh7DG123100
rosa_wichuraiana	Rw7G010230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	306, 837
AccIII	TCCGGA	1 cut(s)	493
AclWI	GGATC	5 cut(s)	123, 136, 485, 632, 744
AcoI	YGGCCR	2 cut(s)	282, 769
AcsI	RAATTY	1 cut(s)	676
AcuI	CTGAAG	2 cut(s)	189, 705
AfaI	GTAC	1 cut(s)	690
AgsI	TTSAA	3 cut(s)	547, 614, 634
AjiI	CACGTC	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	654
AluBI	AGCT	8 cut(s)	21, 79, 232, 272, 346, 538, 550, 853
AluI	AGCT	8 cut(s)	21, 79, 232, 272, 346, 538, 550, 853
Alw21I	GWGCWC	1 cut(s)	855
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	5 cut(s)	123, 136, 485, 632, 744
Aor13HI	TCCGGA	1 cut(s)	493
AoxI	GGCC	4 cut(s)	109, 282, 315, 769
ApeKI	GCWGC	2 cut(s)	550, 647
ApoI	RAATTY	1 cut(s)	676
Asp700I	GAANNNNTTC	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	306
AsuHPI	GGTGA	1 cut(s)	773
BamHI	GGATCC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	855
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	855
BbvCI	CCTCAGC	1 cut(s)	693
BbvI	GCAGC	2 cut(s)	537, 634
BccI	CCATC	1 cut(s)	111
BceAI	ACGGC	2 cut(s)	302, 380
BcgI	CGANNNNNNTGC	4 cut(s)	302, 336, 827, 861
BciT130I	CCWGG	1 cut(s)	656
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	1 cut(s)	408
BglI	GCCNNNNNGGC	1 cut(s)	323
BisI	GCNGC	8 cut(s)	307, 310, 324, 327, 355, 551, 648, 769
BlpI	GCTNAGC	1 cut(s)	849
BlsI	GCNGC	8 cut(s)	308, 311, 325, 328, 356, 552, 649, 770
Bme1390I	CCNGG	1 cut(s)	656
BmgBI	CACGTC	1 cut(s)	262
BmiI	GGNNCC	2 cut(s)	130, 394
BmrFI	CCNGG	1 cut(s)	656
BmrI	ACTGGG	1 cut(s)	21
BmsI	GCATC	2 cut(s)	183, 772
BmuI	ACTGGG	1 cut(s)	21
BpiI	GAAGAC	1 cut(s)	14
BpmI	CTGGAG	1 cut(s)	199
Bpu10I	CCTNAGC	1 cut(s)	693
Bpu1102I	GCTNAGC	1 cut(s)	849
BsaBI	GATNNNNATC	1 cut(s)	489
BsaWI	WCCGGW	1 cut(s)	493
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	2 cut(s)	16, 566
Bse8I	GATNNNNATC	1 cut(s)	489
BseAI	TCCGGA	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	656
BseGI	GGATG	2 cut(s)	174, 379
BseJI	GATNNNNATC	1 cut(s)	489
BseMII	CTCAG	3 cut(s)	40, 707, 840
BseNI	ACTGG	2 cut(s)	16, 566
BseRI	GAGGAG	4 cut(s)	59, 181, 184, 187
BseXI	GCAGC	2 cut(s)	537, 634
Bsh1236I	CGCG	2 cut(s)	306, 837
BshFI	GGCC	4 cut(s)	111, 284, 317, 771
BsiHKAI	GWGCWC	1 cut(s)	855
BsiSI	CCGG	2 cut(s)	108, 494
BsmAI	GTCTC	1 cut(s)	163
BsmBI	CGTCTC	1 cut(s)	163
BsnI	GGCC	4 cut(s)	111, 284, 317, 771
Bsp1286I	GDGCHC	1 cut(s)	855
Bsp13I	TCCGGA	1 cut(s)	493
Bsp143I	GATC	6 cut(s)	123, 128, 490, 594, 637, 736
Bsp1720I	GCTNAGC	1 cut(s)	849
BspANI	GGCC	4 cut(s)	111, 284, 317, 771
BspCNI	CTCAG	3 cut(s)	39, 706, 841
BspEI	TCCGGA	1 cut(s)	493
BspFNI	CGCG	2 cut(s)	306, 837
BspLI	GGNNCC	2 cut(s)	130, 394
BspPI	GGATC	5 cut(s)	123, 136, 485, 632, 744
BspQI	GCTCTTC	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	107
BsrI	ACTGG	2 cut(s)	16, 566
BssAI	RCCGGY	1 cut(s)	107
BssMI	GATC	6 cut(s)	123, 128, 490, 594, 637, 736
Bst2UI	CCWGG	1 cut(s)	656
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	2 cut(s)	222, 291
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstC8I	GCNNGC	2 cut(s)	55, 109
BstDEI	CTNAG	4 cut(s)	26, 693, 786, 849
BstF5I	GGATG	2 cut(s)	174, 379
BstFNI	CGCG	2 cut(s)	306, 837
BstHHI	GCGC	1 cut(s)	306
BstKTI	GATC	6 cut(s)	126, 131, 493, 597, 640, 739
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	6 cut(s)	123, 128, 490, 594, 637, 736
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 614, 623
BstNI	CCWGG	1 cut(s)	656
BstSCI	CCNGG	1 cut(s)	654
BstUI	CGCG	2 cut(s)	306, 837
BstV1I	GCAGC	2 cut(s)	537, 634
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	3 cut(s)	128, 637, 736
BstYI	RGATCY	3 cut(s)	128, 637, 736
BsuRI	GGCC	4 cut(s)	111, 284, 317, 771
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	2 cut(s)	174, 379
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	2 cut(s)	55, 109
CfoI	GCGC	1 cut(s)	306
Cfr10I	RCCGGY	1 cut(s)	107
CseI	GACGC	1 cut(s)	46
CsiI	ACCWGGT	1 cut(s)	654
Csp6I	GTAC	1 cut(s)	689
CviAII	CATG	4 cut(s)	598, 733, 773, 798
CviQI	GTAC	1 cut(s)	689
DdeI	CTNAG	4 cut(s)	26, 693, 786, 849
DpnI	GATC	6 cut(s)	125, 130, 492, 596, 639, 738
DpnII	GATC	6 cut(s)	123, 128, 490, 594, 637, 736
EaeI	YGGCCR	2 cut(s)	282, 769
Eam1104I	CTCTTC	2 cut(s)	222, 291
EarI	CTCTTC	2 cut(s)	222, 291
EciI	GGCGGA	1 cut(s)	372
Ecl136II	GAGCTC	1 cut(s)	853
Eco24I	GRGCYC	1 cut(s)	855
Eco53kI	GAGCTC	1 cut(s)	853
Eco57I	CTGAAG	2 cut(s)	189, 705
EcoICRI	GAGCTC	1 cut(s)	853
EcoRII	CCWGG	1 cut(s)	654
EcoT22I	ATGCAT	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	855
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	4 cut(s)	601, 736, 776, 801
FaiI	YATR	6 cut(s)	483, 599, 652, 734, 774, 799
FatI	CATG	4 cut(s)	597, 732, 772, 797
FauI	CCCGC	2 cut(s)	112, 842
Fnu4HI	GCNGC	8 cut(s)	307, 310, 324, 327, 355, 551, 648, 769
FokI	GGATG	2 cut(s)	161, 386
FriOI	GRGCYC	1 cut(s)	855
Fsp4HI	GCNGC	8 cut(s)	307, 310, 324, 327, 355, 551, 648, 769
FspBI	CTAG	1 cut(s)	408
GlaI	GCGC	1 cut(s)	305
GluI	GCNGC	8 cut(s)	307, 310, 324, 327, 355, 551, 648, 769
GsuI	CTGGAG	1 cut(s)	199
HaeIII	GGCC	4 cut(s)	111, 284, 317, 771
HapII	CCGG	2 cut(s)	108, 494
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	1 cut(s)	306
Hin1II	CATG	4 cut(s)	601, 736, 776, 801
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HinfI	GANTC	8 cut(s)	185, 221, 255, 287, 404, 526, 776, 830
HpaII	CCGG	2 cut(s)	108, 494
HphI	GGTGA	1 cut(s)	773
Hpy188III	TCNNGA	4 cut(s)	216, 408, 494, 856
Hpy99I	CGWCG	2 cut(s)	101, 296
HpyAV	CCTTC	3 cut(s)	43, 327, 588
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	3 cut(s)	239, 261, 604
HpyCH4V	TGCA	4 cut(s)	174, 601, 608, 650
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 614, 623
HpyF3I	CTNAG	4 cut(s)	26, 693, 786, 849
HpySE526I	ACGT	3 cut(s)	239, 261, 604
Hsp92II	CATG	4 cut(s)	601, 736, 776, 801
HspAI	GCGC	1 cut(s)	304
Kpn2I	TCCGGA	1 cut(s)	493
KroI	GCCGGC	1 cut(s)	107
KroNI	GCCGGC	1 cut(s)	109
Kzo9I	GATC	6 cut(s)	123, 128, 490, 594, 637, 736
LguI	GCTCTTC	1 cut(s)	222
LmnI	GCTCC	2 cut(s)	269, 392
LpnPI	CCDG	9 cut(s)	121, 229, 365, 507, 579, 641, 668, 711, 841
Lsp1109I	GCAGC	2 cut(s)	537, 634
LweI	GCATC	2 cut(s)	183, 772
MabI	ACCWGGT	1 cut(s)	654
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	3 cut(s)	239, 261, 604
MaeIII	GTNAC	2 cut(s)	240, 336
MalI	GATC	6 cut(s)	125, 130, 492, 596, 639, 738
MboI	GATC	6 cut(s)	123, 128, 490, 594, 637, 736
MboII	GAAGA	6 cut(s)	19, 48, 195, 239, 308, 871
MfeI	CAATTG	1 cut(s)	609
MflI	RGATCY	3 cut(s)	128, 637, 736
MhlI	GDGCHC	1 cut(s)	855
MluCI	AATT	3 cut(s)	387, 609, 676
MlyI	GAGTC	2 cut(s)	413, 824
MmeI	TCCRAC	1 cut(s)	315
Mph1103I	ATGCAT	1 cut(s)	176
MroI	TCCGGA	1 cut(s)	493
MroNI	GCCGGC	1 cut(s)	107
MroXI	GAANNNNTTC	1 cut(s)	254
MseI	TTAA	1 cut(s)	668
MslI	CAYNNNNRTG	1 cut(s)	169
MspI	CCGG	2 cut(s)	108, 494
MspR9I	CCNGG	1 cut(s)	656
MunI	CAATTG	1 cut(s)	609
MvaI	CCWGG	1 cut(s)	656
MvnI	CGCG	2 cut(s)	306, 837
MwoI	GCNNNNNNNGC	3 cut(s)	323, 614, 623
NaeI	GCCGGC	1 cut(s)	109
NdeII	GATC	6 cut(s)	123, 128, 490, 594, 637, 736
NgoMIV	GCCGGC	1 cut(s)	107
NlaIII	CATG	4 cut(s)	601, 736, 776, 801
NlaIV	GGNNCC	2 cut(s)	130, 394
NsiI	ATGCAT	1 cut(s)	176
PciSI	GCTCTTC	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	245
PdiI	GCCGGC	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	254
PfeI	GAWTC	6 cut(s)	185, 221, 255, 287, 526, 776
PkrI	GCNGC	8 cut(s)	308, 311, 325, 328, 356, 552, 649, 770
PleI	GAGTC	2 cut(s)	412, 824
PpsI	GAGTC	2 cut(s)	412, 824
Psp124BI	GAGCTC	1 cut(s)	855
Psp6I	CCWGG	1 cut(s)	654
PspGI	CCWGG	1 cut(s)	654
PspN4I	GGNNCC	2 cut(s)	130, 394
PsuI	RGATCY	3 cut(s)	128, 637, 736
RsaI	GTAC	1 cut(s)	690
RsaNI	GTAC	1 cut(s)	689
RseI	CAYNNNNRTG	1 cut(s)	169
SacI	GAGCTC	1 cut(s)	855
SapI	GCTCTTC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	668
SatI	GCNGC	8 cut(s)	307, 310, 324, 327, 355, 551, 648, 769
Sau3AI	GATC	6 cut(s)	123, 128, 490, 594, 637, 736
SchI	GAGTC	2 cut(s)	413, 824
ScrFI	CCNGG	1 cut(s)	656
SduI	GDGCHC	1 cut(s)	855
SexAI	ACCWGGT	1 cut(s)	654
SfaNI	GCATC	2 cut(s)	183, 772
SmiMI	CAYNNNNRTG	1 cut(s)	169
Sse9I	AATT	3 cut(s)	387, 609, 676
SspMI	CTAG	1 cut(s)	408
SstI	GAGCTC	1 cut(s)	855
StyD4I	CCNGG	1 cut(s)	654
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	3 cut(s)	242, 264, 607
TaqI	TCGA	1 cut(s)	437
TasI	AATT	3 cut(s)	387, 609, 676
TauI	GCSGC	6 cut(s)	309, 312, 326, 329, 357, 771
TfiI	GAWTC	6 cut(s)	185, 221, 255, 287, 526, 776
Tru1I	TTAA	1 cut(s)	668
Tru9I	TTAA	1 cut(s)	668
TscAI	CASTG	1 cut(s)	157
TseI	GCWGC	2 cut(s)	550, 647
TspDTI	ATGAA	1 cut(s)	669
TspGWI	ACGGA	2 cut(s)	50, 355
TspRI	CASTG	1 cut(s)	157
XapI	RAATTY	1 cut(s)	676
XbaI	TCTAGA	1 cut(s)	407
XmnI	GAANNNNTTC	1 cut(s)	254
XspI	CTAG	1 cut(s)	408
Zsp2I	ATGCAT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.