FvH4_5g06950

UFM1-specific

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0008045
Physical Location & Seq
Forward (+)
4120600 .. 4122047
1448 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g06950.t1

Sequence Viewer

Length: 717 bp
ATGCGAATAGAGGAAGTGAAATGGCGAAGACGGGGCAAAGCCAGTGTAACAAGAATGGAGAAGCCAAGCCTCCTTCGAGTTCTCAGCCCCAAGCTCATTCTCCACAAGAACGACAAACCAGCCGGCCTCCGATGGCTGATCGGATCCCCGTTCTTCCCGCCACTAACCGTCGTCTCCGCACTCAAATGCATCCACACCGATTCCTCCTCATCTCCAGGCTACACCAGAGAATCAGAAGAGCTTCGGACGTTACTGCCGAAAGGATTCCACGTCGTCGGAGTTTTAGTTGTGGCCGATTCCGACGAAGAGAAGCGCGGCGGCGAGGCCGTTGCGGCGGCGAGAAGGTTACGGAAGCTAATGTGCGGCGGAAGTGAGAGAATGGATGAGCAGGGAGTAATTGGAGCCGTTGCGGAGTCTAGAGGTGGAGGCATTCGATTTTACGTGTCGAAATCGGAGAGTTGTGAGAGGTTTCAGTGTGTTGATGTGGTGTATGTGACAGTGTATGATGATGATCCGGAGAGGTTTGTTTGGGAGAGGGGTTGTTTGATTCGGTGTGAGCTTCCTTTGAAGCTGCCGATTTACTATCCAGTAAATAAGCCTTCTGATACCGAACGGATCATGCAGCGTGCAATTGAAGCAGTTATTGCCAAGTTCAAAGATCCGAAGGCTGCATACCTGGTGGAAACTTCAAGCAAAACTTCATCTAAAGTACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0016787 GO:0019538 GO:0019783 GO:0043170 GO:0044238 GO:0070011 GO:0071567 GO:0071704 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C78

Protein Analysis

239

Amino Acids

26.7

Weight (kDa)

9.28

Isoelectric Point (pI)

58.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 315
AccIII TCCGGA 1 cut(s) 514
AciI CCGC 9 cut(s) 158, 177, 315, 318, 332, 335, 363, 366, 410
AclWI GGATC 5 cut(s) 138, 151, 506, 623, 653
AcoI YGGCCR 1 cut(s) 291
AfaI GTAC 1 cut(s) 711
AflIII ACRYGT 1 cut(s) 441
AgsI TTSAA 4 cut(s) 568, 635, 655, 690
AjiI CACGTC 1 cut(s) 271
AjnI CCWGG 2 cut(s) 214, 675
AluBI AGCT 5 cut(s) 94, 241, 355, 559, 571
AluI AGCT 5 cut(s) 94, 241, 355, 559, 571
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 5 cut(s) 138, 151, 506, 623, 653
Aor13HI TCCGGA 1 cut(s) 514
AoxI GGCC 3 cut(s) 124, 291, 324
ApeKI GCWGC 3 cut(s) 571, 622, 668
Asp700I GAANNNNTTC 2 cut(s) 240, 263
AspLEI GCGC 1 cut(s) 315
BamHI GGATCC 1 cut(s) 143
BarI GAAGNNNNNNTAC 2 cut(s) 656, 688
BbsI GAAGAC 1 cut(s) 34
BbvI GCAGC 3 cut(s) 558, 634, 655
BccI CCATC 1 cut(s) 126
BceAI ACGGC 2 cut(s) 311, 389
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BciT130I CCWGG 2 cut(s) 216, 677
BcoDI GTCTC 1 cut(s) 178
BfaI CTAG 1 cut(s) 417
BglI GCCNNNNNGGC 1 cut(s) 332
BisI GCNGC 8 cut(s) 316, 319, 333, 336, 364, 572, 623, 669
BlsI GCNGC 8 cut(s) 317, 320, 334, 337, 365, 573, 624, 670
Bme1390I CCNGG 2 cut(s) 216, 677
BmgBI CACGTC 1 cut(s) 271
BmiI GGNNCC 2 cut(s) 145, 403
BmrFI CCNGG 2 cut(s) 216, 677
BmsI GCATC 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 34
BpmI CTGGAG 1 cut(s) 198
BsaAI YACGTR 1 cut(s) 442
BsaBI GATNNNNATC 1 cut(s) 510
BsaWI WCCGGW 1 cut(s) 514
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 2 cut(s) 42, 587
Bse8I GATNNNNATC 1 cut(s) 510
BseAI TCCGGA 1 cut(s) 514
BseBI CCWGG 2 cut(s) 216, 677
BseGI GGATG 2 cut(s) 189, 388
BseJI GATNNNNATC 1 cut(s) 510
BseMII CTCAG 1 cut(s) 97
BseNI ACTGG 2 cut(s) 42, 587
BseRI GAGGAG 1 cut(s) 196
BseXI GCAGC 3 cut(s) 558, 634, 655
Bsh1236I CGCG 1 cut(s) 315
BshFI GGCC 3 cut(s) 126, 293, 326
BsiSI CCGG 2 cut(s) 123, 515
BsmAI GTCTC 1 cut(s) 178
BsmBI CGTCTC 1 cut(s) 178
BsmI GAATGC 1 cut(s) 429
BsnI GGCC 3 cut(s) 126, 293, 326
Bsp13I TCCGGA 1 cut(s) 514
Bsp143I GATC 5 cut(s) 138, 143, 511, 615, 658
BspACI CCGC 9 cut(s) 158, 177, 315, 318, 332, 335, 363, 366, 410
BspANI GGCC 3 cut(s) 126, 293, 326
BspCNI CTCAG 1 cut(s) 96
BspEI TCCGGA 1 cut(s) 514
BspFNI CGCG 1 cut(s) 315
BspLI GGNNCC 2 cut(s) 145, 403
BspPI GGATC 5 cut(s) 138, 151, 506, 623, 653
BspQI GCTCTTC 1 cut(s) 231
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 2 cut(s) 42, 587
BssAI RCCGGY 1 cut(s) 122
BssMI GATC 5 cut(s) 138, 143, 511, 615, 658
Bst2UI CCWGG 2 cut(s) 216, 677
Bst4CI ACNGT 2 cut(s) 169, 499
Bst6I CTCTTC 2 cut(s) 231, 300
BstAPI GCANNNNNTGC 1 cut(s) 644
BstBAI YACGTR 1 cut(s) 442
BstC8I GCNNGC 2 cut(s) 124, 627
BstDEI CTNAG 2 cut(s) 83, 714
BstF5I GGATG 2 cut(s) 189, 388
BstFNI CGCG 1 cut(s) 315
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 5 cut(s) 141, 146, 514, 618, 661
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 5 cut(s) 138, 143, 511, 615, 658
BstMWI GCNNNNNNNGC 3 cut(s) 332, 635, 644
BstNI CCWGG 2 cut(s) 216, 677
BstSCI CCNGG 2 cut(s) 214, 675
BstUI CGCG 1 cut(s) 315
BstV1I GCAGC 3 cut(s) 558, 634, 655
BstV2I GAAGAC 1 cut(s) 34
BstX2I RGATCY 2 cut(s) 143, 658
BstYI RGATCY 2 cut(s) 143, 658
BsuRI GGCC 3 cut(s) 126, 293, 326
BtrI CACGTC 1 cut(s) 271
BtsCI GGATG 2 cut(s) 189, 388
BtsIMutI CAGTG 3 cut(s) 49, 479, 504
Cac8I GCNNGC 2 cut(s) 124, 627
CfoI GCGC 1 cut(s) 315
Cfr10I RCCGGY 1 cut(s) 122
CsiI ACCWGGT 1 cut(s) 675
Csp6I GTAC 1 cut(s) 710
CviAII CATG 1 cut(s) 619
CviQI GTAC 1 cut(s) 710
DdeI CTNAG 2 cut(s) 83, 714
DpnI GATC 5 cut(s) 140, 145, 513, 617, 660
DpnII GATC 5 cut(s) 138, 143, 511, 615, 658
EaeI YGGCCR 1 cut(s) 291
Eam1104I CTCTTC 2 cut(s) 231, 300
EarI CTCTTC 2 cut(s) 231, 300
EciI GGCGGA 1 cut(s) 381
EcoRII CCWGG 2 cut(s) 214, 675
EcoT22I ATGCAT 1 cut(s) 191
Esp3I CGTCTC 1 cut(s) 178
FaeI CATG 1 cut(s) 622
FaiI YATR 4 cut(s) 492, 504, 620, 673
FalI AAGNNNNNCTT 2 cut(s) 682, 714
FatI CATG 1 cut(s) 618
FauI CCCGC 1 cut(s) 165
Fnu4HI GCNGC 8 cut(s) 316, 319, 333, 336, 364, 572, 623, 669
FokI GGATG 2 cut(s) 176, 395
Fsp4HI GCNGC 8 cut(s) 316, 319, 333, 336, 364, 572, 623, 669
FspBI CTAG 1 cut(s) 417
GlaI GCGC 1 cut(s) 314
GluI GCNGC 8 cut(s) 316, 319, 333, 336, 364, 572, 623, 669
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 3 cut(s) 126, 293, 326
HapII CCGG 2 cut(s) 123, 515
HhaI GCGC 1 cut(s) 315
Hin1II CATG 1 cut(s) 622
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HinfI GANTC 6 cut(s) 200, 230, 264, 296, 413, 547
HpaII CCGG 2 cut(s) 123, 515
Hpy188I TCNGA 9 cut(s) 131, 143, 235, 246, 278, 301, 454, 604, 663
Hpy188III TCNNGA 2 cut(s) 417, 515
Hpy99I CGWCG 4 cut(s) 173, 275, 278, 305
HpyAV CCTTC 4 cut(s) 83, 336, 609, 658
HpyCH4III ACNGT 2 cut(s) 169, 499
HpyCH4IV ACGT 3 cut(s) 248, 270, 441
HpyCH4V TGCA 4 cut(s) 189, 622, 629, 671
HpyF10VI GCNNNNNNNGC 3 cut(s) 332, 635, 644
HpyF3I CTNAG 2 cut(s) 83, 714
HpySE526I ACGT 3 cut(s) 248, 270, 441
Hsp92II CATG 1 cut(s) 622
HspAI GCGC 1 cut(s) 313
Kpn2I TCCGGA 1 cut(s) 514
KroI GCCGGC 1 cut(s) 122
KroNI GCCGGC 1 cut(s) 124
Kzo9I GATC 5 cut(s) 138, 143, 511, 615, 658
LguI GCTCTTC 1 cut(s) 231
LmnI GCTCC 1 cut(s) 401
Lsp1109I GCAGC 3 cut(s) 558, 634, 655
LweI GCATC 1 cut(s) 198
MabI ACCWGGT 1 cut(s) 675
MaeI CTAG 1 cut(s) 417
MaeII ACGT 3 cut(s) 248, 270, 441
MaeIII GTNAC 4 cut(s) 46, 249, 345, 493
MalI GATC 5 cut(s) 140, 145, 513, 617, 660
MboI GATC 5 cut(s) 138, 143, 511, 615, 658
MboII GAAGA 4 cut(s) 39, 145, 248, 317
MfeI CAATTG 1 cut(s) 630
MflI RGATCY 2 cut(s) 143, 658
MluCI AATT 2 cut(s) 396, 630
MlyI GAGTC 1 cut(s) 422
MmeI TCCRAC 2 cut(s) 256, 324
Mph1103I ATGCAT 1 cut(s) 191
MroI TCCGGA 1 cut(s) 514
MroNI GCCGGC 1 cut(s) 122
MroXI GAANNNNTTC 2 cut(s) 240, 263
MslI CAYNNNNRTG 1 cut(s) 184
MspI CCGG 2 cut(s) 123, 515
MspR9I CCNGG 2 cut(s) 216, 677
MunI CAATTG 1 cut(s) 630
Mva1269I GAATGC 1 cut(s) 429
MvaI CCWGG 2 cut(s) 216, 677
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 3 cut(s) 332, 635, 644
NaeI GCCGGC 1 cut(s) 124
NdeII GATC 5 cut(s) 138, 143, 511, 615, 658
NgoMIV GCCGGC 1 cut(s) 122
NlaIII CATG 1 cut(s) 622
NlaIV GGNNCC 2 cut(s) 145, 403
NmuCI GTSAC 1 cut(s) 493
NsiI ATGCAT 1 cut(s) 191
PciSI GCTCTTC 1 cut(s) 231
PcsI WCGNNNNNNNCGW 1 cut(s) 254
PctI GAATGC 1 cut(s) 429
PdiI GCCGGC 1 cut(s) 124
PdmI GAANNNNTTC 2 cut(s) 240, 263
PfeI GAWTC 5 cut(s) 200, 230, 264, 296, 547
PkrI GCNGC 8 cut(s) 317, 320, 334, 337, 365, 573, 624, 670
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
Ppu21I YACGTR 1 cut(s) 442
Psp6I CCWGG 2 cut(s) 214, 675
PspGI CCWGG 2 cut(s) 214, 675
PspN4I GGNNCC 2 cut(s) 145, 403
PsuI RGATCY 2 cut(s) 143, 658
RsaI GTAC 1 cut(s) 711
RsaNI GTAC 1 cut(s) 710
RseI CAYNNNNRTG 1 cut(s) 184
SapI GCTCTTC 1 cut(s) 231
SatI GCNGC 8 cut(s) 316, 319, 333, 336, 364, 572, 623, 669
Sau3AI GATC 5 cut(s) 138, 143, 511, 615, 658
SchI GAGTC 1 cut(s) 422
ScrFI CCNGG 2 cut(s) 216, 677
SexAI ACCWGGT 1 cut(s) 675
SfaNI GCATC 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 184
Sse9I AATT 2 cut(s) 396, 630
SsiI CCGC 9 cut(s) 158, 177, 315, 318, 332, 335, 363, 366, 410
SspMI CTAG 1 cut(s) 417
StyD4I CCNGG 2 cut(s) 214, 675
TaaI ACNGT 2 cut(s) 169, 499
TaiI ACGT 3 cut(s) 251, 273, 444
TaqI TCGA 3 cut(s) 76, 433, 446
TasI AATT 2 cut(s) 396, 630
TauI GCSGC 5 cut(s) 318, 321, 335, 338, 366
TfiI GAWTC 5 cut(s) 200, 230, 264, 296, 547
TscAI CASTG 3 cut(s) 49, 479, 504
TseFI GTSAC 1 cut(s) 493
TseI GCWGC 3 cut(s) 571, 622, 668
Tsp45I GTSAC 1 cut(s) 493
TspDTI ATGAA 1 cut(s) 690
TspGWI ACGGA 2 cut(s) 364, 628
TspRI CASTG 3 cut(s) 49, 479, 504
XbaI TCTAGA 1 cut(s) 416
XmnI GAANNNNTTC 2 cut(s) 240, 263
XspI CTAG 1 cut(s) 417
Zsp2I ATGCAT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.