FvH4_5g07730

Protein of unknown function (DUF3537)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014739
Physical Location & Seq
Reverse (-)
4527390 .. 4529339
1950 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g07730.t1

Sequence Viewer

Length: 1383 bp
ATGCCATTTAAACACACTCATACAATCATCTCAATAACCAGAGGCTCTTTGTTGTTCAATATCCTTCATCTCATGGCAATCCCAGAATCACAAGAAACCATAATCCCACTGATAGACTCATCAGAAACACAACCAAACACAGAACCAGATGATGATACCCATCTTGATCACACTCTCTCCCGCTTTGAAAACTTCCTCAGGCTCTTTGGTTTCTGCCAGTATTCCTTTTGGAGCTTCAGCCTCTCATGGCTTGCATTCCTTCTTGTGGGTGTTGCGCTACCTATGATACTTATTGAGATATTTCAATGTGCCAACTGTGAAAAGTATCAGATCAAAAGCTTTGAGCTTGAGATTCTCGTTTGCGAGTCTCTAGTGGCTGCAGTTTCTTTGCTTTGTATTTCTCACAACCTCCGCAAGTATGGAGTAAGAAAGTTCTTGTTTGTGGATAGGTATCATGGCCATATGACTCAGTTCCATGATGAATATATACGAAAGATCAATGGTTTCTTTCACTTGCTGTTAGTGTGGCTACTGCCTTGCTTCCTTCTCAAGACTGCTCGTGAAATCACTCGAGTTGCTTCTGTTCCCCAAGATTCACGGTGGAAATCTGTTGCTGTTTTACTTGCTTTCCTTGTGTCGTGGATGTATTCCAATGTCATATTCCTATCAGGCAGTTGTTTGTTCAATTTGGTATGCAATTTGCAAGTCATACACTTTGATAACTATGGGAAGCTCTTAGAAATGGATATAGATGTTTCTGCATACATTGAGGAACACATTCGTCTAACGCACTATCTATCCAAGATTAGCCACAGATTCCGAATCTATCTCCTTCTTCAACTTTTACTAGTCACAGCCAGCCAGTTTGTGGTTCTTCTGGAGACAACTGAGAACAGCAAACTCATCAATCTCACCAATGGAGGAGATTTTGTGGTCTCCTCAATTGTTGAGCTTGTTGGGATAATCATATGCCTGCAAGCAGCTGCAAAGATTTCACGTAGAGCTCAAGGACTTGCATCAGTAACTAGCAGATGGCACGCTATGGTCACGTGTAGCTCCGGCGACCCTTCTCAAATGGGTGTTGATAATGATACAGAAAACTTGGAGACCTCATATCCAGCTGGTTCATTGCCCATAAACTACTCAGAGACTGATCTGGAGTCCATTGATTATGTGCCAGTGCCTACAAATACACAACTAGCTTCATACATGTCCATGTATCACAAAAGAGAAGCTTTTGTTTCCTATATGCAGTCCAACCCCGGCGGTGTTACCATATACGGATGGAGGACTGATCGGGCACTAATCAATACAATCTTCTTCGTTGAGCTCTCCCTCGTTCTTTTTGTGCTTGGGAAGACAATAACCTTCACCACTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3537

Protein Analysis

461

Amino Acids

52.43

Weight (kDa)

6.05

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3537 PF12056 58 - 441 1.8e-142 Protein of unknown function (DUF3537)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014739)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g07730
malus_domestica MD14G1161500.v1.1
prunus_persica Prupe.5G154400_v2.0.a1
pyrus_communis pycom14g13440
rosa_chinensis RchiOBHm_Chr7g0190691
rosa_laevigata RLG00000004503
rosa_multiflora Rmu_sc0006709.1_g000002 Rmu_sc0014053.1_g000002 Rmu_sc0014053.1_g000003 Rmu_sc0026963.1_g000001
rosa_roxburghii Rroxscaffold_3G00264400
rosa_rugosa Rorug06G0506500
rosa_samantha Rh7AG113000 Rh7BG115500 Rh7CG118000 Rh7DG116900
rosa_wichuraiana Rw7G009860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 868
AciI CCGC 3 cut(s) 181, 412, 1266
AcoI YGGCCR 1 cut(s) 457
AcuI CTGAAG 1 cut(s) 220
AcvI CACGTG 1 cut(s) 1050
AfiI CCNNNNNNNGG 2 cut(s) 265, 868
AflIII ACRYGT 2 cut(s) 1049, 1209
AgsI TTSAA 5 cut(s) 58, 188, 305, 685, 839
AhlI ACTAGT 1 cut(s) 847
AjuI GAANNNNNNNTTGG 2 cut(s) 644, 676
Alw21I GWGCWC 2 cut(s) 1006, 1332
Alw26I GTCTC 5 cut(s) 372, 875, 940, 1100, 1142
AlwNI CAGNNNCTG 1 cut(s) 1151
Ama87I CYCGRG 1 cut(s) 570
AoxI GGCC 1 cut(s) 457
ApeKI GCWGC 3 cut(s) 377, 980, 983
Asp700I GAANNNNTTC 1 cut(s) 777
AspLEI GCGC 1 cut(s) 277
AsuC2I CCSGG 1 cut(s) 1263
AsuHPI GGTGA 2 cut(s) 904, 1363
AvaI CYCGRG 1 cut(s) 570
AxyI CCTNAGG 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 1303
BalI TGGCCA 1 cut(s) 459
BanII GRGCYC 2 cut(s) 1006, 1332
BauI CACGAG 1 cut(s) 558
BbrPI CACGTG 1 cut(s) 1050
BbsI GAAGAC 1 cut(s) 1364
Bbv12I GWGCWC 2 cut(s) 1006, 1332
BbvI GCAGC 3 cut(s) 364, 970, 992
BccI CCATC 3 cut(s) 168, 1026, 1278
BclI TGATCA 1 cut(s) 166
BcnI CCSGG 1 cut(s) 1263
BcoDI GTCTC 5 cut(s) 372, 875, 940, 1100, 1142
BcuI ACTAGT 1 cut(s) 847
BfaI CTAG 4 cut(s) 371, 848, 1026, 1199
BfmI CTRYAG 1 cut(s) 378
BisI GCNGC 3 cut(s) 378, 981, 984
BlsI GCNGC 3 cut(s) 379, 982, 985
Bme1390I CCNGG 1 cut(s) 1263
BmeT110I CYCGRG 1 cut(s) 570
BmrFI CCNGG 1 cut(s) 1263
BmsI GCATC 1 cut(s) 1025
BpiI GAAGAC 1 cut(s) 1364
BpmI CTGGAG 2 cut(s) 899, 1178
BpuEI CTTGAG 3 cut(s) 368, 533, 990
BpuMI CCSGG 1 cut(s) 1263
BsaAI YACGTR 2 cut(s) 998, 1050
BsaBI GATNNNNATC 2 cut(s) 159, 450
BsaI GGTCTC 2 cut(s) 940, 1100
BsaJI CCNNGG 1 cut(s) 1261
BsaXI ACNNNNNCTCC 4 cut(s) 161, 191, 915, 945
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 868
Bse1I ACTGG 3 cut(s) 217, 862, 1178
Bse21I CCTNAGG 1 cut(s) 197
Bse3DI GCAATG 1 cut(s) 1127
Bse8I GATNNNNATC 2 cut(s) 159, 450
BseDI CCNNGG 1 cut(s) 1261
BseGI GGATG 2 cut(s) 648, 1289
BseJI GATNNNNATC 2 cut(s) 159, 450
BseLI CCNNNNNNNGG 2 cut(s) 265, 868
BseMI GCAATG 1 cut(s) 1127
BseMII CTCAG 4 cut(s) 211, 482, 879, 1158
BseNI ACTGG 3 cut(s) 217, 862, 1178
BseRI GAGGAG 2 cut(s) 928, 936
BseSI GKGCMC 1 cut(s) 1303
BseXI GCAGC 3 cut(s) 364, 970, 992
BshFI GGCC 1 cut(s) 459
BsiHKAI GWGCWC 2 cut(s) 1006, 1332
BsiHKCI CYCGRG 1 cut(s) 570
BsiSI CCGG 2 cut(s) 1059, 1263
BslI CCNNNNNNNGG 2 cut(s) 265, 868
BsmAI GTCTC 5 cut(s) 372, 875, 940, 1100, 1142
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 1 cut(s) 459
Bso31I GGTCTC 2 cut(s) 940, 1100
BsoBI CYCGRG 1 cut(s) 570
Bsp1286I GDGCHC 3 cut(s) 1006, 1303, 1332
Bsp143I GATC 5 cut(s) 166, 330, 495, 1153, 1294
BspACI CCGC 3 cut(s) 181, 412, 1266
BspANI GGCC 1 cut(s) 459
BspCNI CTCAG 4 cut(s) 210, 481, 880, 1157
BspMAI CTGCAG 1 cut(s) 382
BspTNI GGTCTC 2 cut(s) 940, 1100
BsrDI GCAATG 1 cut(s) 1127
BsrI ACTGG 3 cut(s) 217, 862, 1178
BssECI CCNNGG 1 cut(s) 1261
BssMI GATC 5 cut(s) 166, 330, 495, 1153, 1294
BssSI CACGAG 1 cut(s) 558
Bst2BI CACGAG 1 cut(s) 558
Bst4CI ACNGT 2 cut(s) 317, 600
BstBAI YACGTR 2 cut(s) 998, 1050
BstC8I GCNNGC 5 cut(s) 252, 859, 974, 978, 1038
BstDEI CTNAG 5 cut(s) 197, 468, 736, 888, 1144
BstF5I GGATG 2 cut(s) 648, 1289
BstHHI GCGC 1 cut(s) 277
BstKTI GATC 5 cut(s) 169, 333, 498, 1156, 1297
BstMAI GTCTC 5 cut(s) 372, 875, 940, 1100, 1142
BstMBI GATC 5 cut(s) 166, 330, 495, 1153, 1294
BstNSI RCATGY 1 cut(s) 1213
BstSCI CCNGG 1 cut(s) 1261
BstSFI CTRYAG 1 cut(s) 378
BstSLI GKGCMC 1 cut(s) 1303
BstV1I GCAGC 3 cut(s) 364, 970, 992
BstV2I GAAGAC 1 cut(s) 1364
Bsu36I CCTNAGG 1 cut(s) 197
BsuRI GGCC 1 cut(s) 459
BtsCI GGATG 2 cut(s) 648, 1289
BtsIMutI CAGTG 2 cut(s) 107, 1185
Cac8I GCNNGC 5 cut(s) 252, 859, 974, 978, 1038
CaiI CAGNNNCTG 1 cut(s) 1151
CfoI GCGC 1 cut(s) 277
CviAII CATG 6 cut(s) 73, 246, 455, 476, 1210, 1216
DdeI CTNAG 5 cut(s) 197, 468, 736, 888, 1144
DpnI GATC 5 cut(s) 168, 332, 497, 1155, 1296
DpnII GATC 5 cut(s) 166, 330, 495, 1153, 1294
DraI TTTAAA 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 457
Ecl136II GAGCTC 2 cut(s) 1004, 1330
Eco24I GRGCYC 2 cut(s) 1006, 1332
Eco31I GGTCTC 2 cut(s) 940, 1100
Eco53kI GAGCTC 2 cut(s) 1004, 1330
Eco57I CTGAAG 1 cut(s) 220
Eco72I CACGTG 1 cut(s) 1050
Eco81I CCTNAGG 1 cut(s) 197
Eco88I CYCGRG 1 cut(s) 570
EcoICRI GAGCTC 2 cut(s) 1004, 1330
EcoT38I GRGCYC 2 cut(s) 1006, 1332
FaeI CATG 6 cut(s) 76, 249, 458, 479, 1213, 1219
FalI AAGNNNNNCTT 2 cut(s) 1219, 1251
FatI CATG 6 cut(s) 72, 245, 454, 475, 1209, 1215
FauI CCCGC 1 cut(s) 188
FauNDI CATATG 2 cut(s) 462, 968
FbaI TGATCA 1 cut(s) 166
Fnu4HI GCNGC 3 cut(s) 378, 981, 984
FokI GGATG 2 cut(s) 655, 1296
FriOI GRGCYC 2 cut(s) 1006, 1332
Fsp4HI GCNGC 3 cut(s) 378, 981, 984
FspBI CTAG 4 cut(s) 371, 848, 1026, 1199
GlaI GCGC 1 cut(s) 276
GluI GCNGC 3 cut(s) 378, 981, 984
GsuI CTGGAG 2 cut(s) 899, 1178
HaeIII GGCC 1 cut(s) 459
HapII CCGG 2 cut(s) 1059, 1263
HhaI GCGC 1 cut(s) 277
Hin1II CATG 6 cut(s) 76, 249, 458, 479, 1213, 1219
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HindIII AAGCTT 2 cut(s) 337, 1233
HinfI GANTC 9 cut(s) 86, 116, 352, 365, 466, 593, 816, 822, 1160
HpaII CCGG 2 cut(s) 1059, 1263
HphI GGTGA 2 cut(s) 904, 1363
Hpy188I TCNGA 4 cut(s) 124, 330, 821, 1147
Hpy188III TCNNGA 5 cut(s) 164, 550, 560, 878, 1157
HpyAV CCTTC 6 cut(s) 74, 269, 554, 842, 1077, 1378
HpyCH4III ACNGT 2 cut(s) 317, 600
HpyCH4IV ACGT 2 cut(s) 997, 1049
HpyCH4V TGCA 9 cut(s) 254, 380, 696, 703, 761, 976, 986, 1016, 1252
HpyF3I CTNAG 5 cut(s) 197, 468, 736, 888, 1144
HpySE526I ACGT 2 cut(s) 997, 1049
Hsp92II CATG 6 cut(s) 76, 249, 458, 479, 1213, 1219
HspAI GCGC 1 cut(s) 275
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 5 cut(s) 166, 330, 495, 1153, 1294
LmnI GCTCC 2 cut(s) 231, 1061
Lsp1109I GCAGC 3 cut(s) 364, 970, 992
LweI GCATC 1 cut(s) 1025
MaeI CTAG 4 cut(s) 371, 848, 1026, 1199
MaeII ACGT 2 cut(s) 997, 1049
MaeIII GTNAC 4 cut(s) 850, 1021, 1045, 1270
MalI GATC 5 cut(s) 168, 332, 497, 1155, 1296
MboI GATC 5 cut(s) 166, 330, 495, 1153, 1294
MboII GAAGA 5 cut(s) 827, 866, 1309, 1312, 1369
MfeI CAATTG 1 cut(s) 942
MhlI GDGCHC 3 cut(s) 1006, 1303, 1332
MlsI TGGCCA 1 cut(s) 459
MluCI AATT 3 cut(s) 685, 697, 942
MluNI TGGCCA 1 cut(s) 459
MlyI GAGTC 4 cut(s) 110, 374, 460, 1169
MmeI TCCRAC 1 cut(s) 1281
Mox20I TGGCCA 1 cut(s) 459
MroXI GAANNNNTTC 1 cut(s) 777
MscI TGGCCA 1 cut(s) 459
MseI TTAA 1 cut(s) 9
MslI CAYNNNNRTG 1 cut(s) 1214
Msp20I TGGCCA 1 cut(s) 459
MspA1I CMGCKG 2 cut(s) 983, 1121
MspI CCGG 2 cut(s) 1059, 1263
MspR9I CCNGG 1 cut(s) 1263
MunI CAATTG 1 cut(s) 942
Mva1269I GAATGC 1 cut(s) 254
NciI CCSGG 1 cut(s) 1263
NdeI CATATG 2 cut(s) 462, 968
NdeII GATC 5 cut(s) 166, 330, 495, 1153, 1294
NlaIII CATG 6 cut(s) 76, 249, 458, 479, 1213, 1219
NmuCI GTSAC 2 cut(s) 850, 1045
NspI RCATGY 1 cut(s) 1213
PaeR7I CTCGAG 1 cut(s) 570
PciI ACATGT 1 cut(s) 1209
PctI GAATGC 1 cut(s) 254
PdmI GAANNNNTTC 1 cut(s) 777
PfeI GAWTC 5 cut(s) 86, 352, 593, 816, 822
PflMI CCANNNNNTGG 1 cut(s) 868
PkrI GCNGC 3 cut(s) 379, 982, 985
PleI GAGTC 4 cut(s) 110, 373, 460, 1168
PmaCI CACGTG 1 cut(s) 1050
PmlI CACGTG 1 cut(s) 1050
PpsI GAGTC 4 cut(s) 110, 373, 460, 1168
Ppu21I YACGTR 2 cut(s) 998, 1050
PscI ACATGT 1 cut(s) 1209
Psp124BI GAGCTC 2 cut(s) 1006, 1332
PspCI CACGTG 1 cut(s) 1050
PspXI VCTCGAGB 1 cut(s) 570
PstI CTGCAG 1 cut(s) 382
PstNI CAGNNNCTG 1 cut(s) 1151
PvuII CAGCTG 2 cut(s) 983, 1121
RseI CAYNNNNRTG 1 cut(s) 1214
SacI GAGCTC 2 cut(s) 1006, 1332
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 3 cut(s) 378, 981, 984
Sau3AI GATC 5 cut(s) 166, 330, 495, 1153, 1294
SchI GAGTC 4 cut(s) 110, 374, 460, 1169
ScrFI CCNGG 1 cut(s) 1263
SduI GDGCHC 3 cut(s) 1006, 1303, 1332
SfaNI GCATC 1 cut(s) 1025
SfcI CTRYAG 1 cut(s) 378
Sfr274I CTCGAG 1 cut(s) 570
SlaI CTCGAG 1 cut(s) 570
SmiMI CAYNNNNRTG 1 cut(s) 1214
SmlI CTYRAG 4 cut(s) 347, 548, 570, 1005
SmoI CTYRAG 4 cut(s) 347, 548, 570, 1005
SpeI ACTAGT 1 cut(s) 847
Sse9I AATT 3 cut(s) 685, 697, 942
SsiI CCGC 3 cut(s) 181, 412, 1266
SspMI CTAG 4 cut(s) 371, 848, 1026, 1199
SstI GAGCTC 2 cut(s) 1006, 1332
StyD4I CCNGG 1 cut(s) 1261
TaaI ACNGT 2 cut(s) 317, 600
TaiI ACGT 2 cut(s) 1000, 1052
TaqI TCGA 1 cut(s) 571
TasI AATT 3 cut(s) 685, 697, 942
TfiI GAWTC 5 cut(s) 86, 352, 593, 816, 822
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TscAI CASTG 2 cut(s) 114, 1185
TseFI GTSAC 2 cut(s) 850, 1045
TseI GCWGC 3 cut(s) 377, 980, 983
Tsp45I GTSAC 2 cut(s) 850, 1045
TspDTI ATGAA 4 cut(s) 56, 495, 1116, 1194
TspGWI ACGGA 1 cut(s) 1296
TspRI CASTG 2 cut(s) 114, 1185
Van91I CCANNNNNTGG 1 cut(s) 868
XceI RCATGY 1 cut(s) 1213
XcmI CCANNNNNNNNNTGG 1 cut(s) 865
XhoI CTCGAG 1 cut(s) 570
XmnI GAANNNNTTC 1 cut(s) 777
XspI CTAG 4 cut(s) 371, 848, 1026, 1199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.