Rh7BG115500

Protein of unknown function (DUF3537)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014739
Physical Location & Seq
Forward (+)
8630729 .. 8632660
1932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG115500.1

Sequence Viewer

Length: 1311 bp
ATGGCAATCCCAGAATCACAAGAAACCATAATCCCACTGATAGACACATCAGAAACACAAACAAAAACAGAACCAGATGATGATACCCATCTTGATCACACTCTCTACCGCTTTGAGACCTTTCTCAGGCTCTTTGGCTTCTGCCAGTATTCCTTTTGGAGCTTCAGTCTCTCATGGCTTGCATTCCTTCTCGTGGGTGTTGCACTGCCAGTGCTACTTATTGAGATCTTTCAATGTGCCAATTGTGATAAGTATCAGATCAAAAGTTTTGAGCTTGAGATTCTGGTTAGCGAGTCTCTTGTGGCTGCAAGTTCTTTGCTTTGTATTTCTCACAACCTCCGCAAGTATGGAGTAAGAAGGTTCTTGTTTGTGGATAGGTATCATGGCCATATGACTCAGTTCCATGATGAATATATACGAAAGATCAATGATTTCTTTCGCTTGCTGTCAGTGTGGCTACTACCTTGCTTCCTTCTGAAGACTGCTCGTGAAATAACTCGAGTCATTTATGTCCCTCAAGATTCATTGTGGAAATCTGTTGCTGTTTTACTTGCTTTCCTTGTGTCGTGGATGTATTCAAATGTAATATTCCTATCAGGCAGTTGTTTGTTCAATTTGGTATGCAATTTGCAAGTCATACACTTTGAGAACTATGGGAAGCTCTTAGAAATGGATATAGATGTTTCTGCATACGTTGAGGAACACATTTGTCTAACGCATTATCTGTCCAAGATTAGCCACAGATTCCGAATCTATCTTCTTCTTCAACTCTTACTAGTCACAGCTAGCCAGTTTGTGGCTCTTTTGGAGAGCACTGAAAACAGCAAAGTCATCACTCTCATCAATGGAGGAGACTTTGTAGTCTCCTCTATTGTTGAGCTTGTTGGAATAATCATATGCCTACAAGCAGCTGCAAAGATTTCACATAGAGCTCAAGGGCTTGCATCAGTAGCTAGCAGATGGCACGCTTTGATCACGTGCAGCTCCGGTGATGCTTCCCACTTGGGAATTGACAATGATACAGAAAACTTGGGGAGTTCTTACCCAGCTGGTTCATTGCCCATAAACTACTCAGAAACTGATCTGGAATCTATTGATTATGTACCAGTGCCTACAAATACACAACTAGCTTCATACATGTCCTTGTATCACAAAAGACAAGCTTTTGTCACTTATATGCAGTCCAACCCCGGTGGGGCTACTATATACGGATGGAGGATTGATCGGACACTGATTAATACTATCTTCTTTGTTGAGCTCTCACTCGTTCTGTTTGTGCTTGGGAAGACGATAACCTTCACCACTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3537

Protein Analysis

436

Amino Acids

49.57

Weight (kDa)

5.77

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3537 PF12056 34 - 417 2.2e-143 Protein of unknown function (DUF3537)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014739)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g07730
malus_domestica MD14G1161500.v1.1
prunus_persica Prupe.5G154400_v2.0.a1
pyrus_communis pycom14g13440
rosa_chinensis RchiOBHm_Chr7g0190691
rosa_laevigata RLG00000004503
rosa_multiflora Rmu_sc0006709.1_g000002 Rmu_sc0014053.1_g000002 Rmu_sc0014053.1_g000003 Rmu_sc0026963.1_g000001
rosa_roxburghii Rroxscaffold_3G00264400
rosa_rugosa Rorug06G0506500
rosa_samantha Rh7AG113000 Rh7BG115500 Rh7CG118000 Rh7DG116900
rosa_wichuraiana Rw7G009860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 860
AccB7I CCANNNNNTGG 1 cut(s) 796
AciI CCGC 2 cut(s) 109, 340
AcoI YGGCCR 1 cut(s) 385
AcuI CTGAAG 2 cut(s) 148, 497
AcvI CACGTG 1 cut(s) 978
AfaI GTAC 1 cut(s) 1104
AfiI CCNNNNNNNGG 4 cut(s) 126, 193, 796, 1195
AflIII ACRYGT 1 cut(s) 1137
AgsI TTSAA 4 cut(s) 233, 579, 613, 767
AhlI ACTAGT 1 cut(s) 775
Alw21I GWGCWC 3 cut(s) 815, 934, 1260
Alw26I GTCTC 5 cut(s) 110, 173, 300, 846, 868
AlwNI CAGNNNCTG 1 cut(s) 1079
Ama87I CYCGRG 1 cut(s) 498
AoxI GGCC 1 cut(s) 385
ApeKI GCWGC 4 cut(s) 305, 908, 911, 981
AseI ATTAAT 1 cut(s) 1236
AsuC2I CCSGG 1 cut(s) 1191
AsuHPI GGTGA 2 cut(s) 1001, 1291
AsuNHI GCTAGC 2 cut(s) 785, 953
AvaI CYCGRG 1 cut(s) 498
BalI TGGCCA 1 cut(s) 387
BanII GRGCYC 2 cut(s) 934, 1260
BauI CACGAG 2 cut(s) 191, 486
BbrPI CACGTG 1 cut(s) 978
BbsI GAAGAC 2 cut(s) 485, 1292
Bbv12I GWGCWC 3 cut(s) 815, 934, 1260
BbvI GCAGC 4 cut(s) 292, 898, 920, 993
BccI CCATC 3 cut(s) 96, 954, 1206
BclI TGATCA 2 cut(s) 94, 972
BcnI CCSGG 1 cut(s) 1191
BcoDI GTCTC 5 cut(s) 110, 173, 300, 846, 868
BcuI ACTAGT 1 cut(s) 775
BfaI CTAG 4 cut(s) 776, 786, 954, 1127
BglII AGATCT 1 cut(s) 225
BisI GCNGC 4 cut(s) 306, 909, 912, 982
BlsI GCNGC 4 cut(s) 307, 910, 913, 983
Bme1390I CCNGG 1 cut(s) 1191
BmeT110I CYCGRG 1 cut(s) 498
BmrFI CCNGG 1 cut(s) 1191
BmsI GCATC 2 cut(s) 953, 982
BmtI GCTAGC 2 cut(s) 789, 957
BpiI GAAGAC 2 cut(s) 485, 1292
BpuEI CTTGAG 3 cut(s) 296, 501, 918
BpuMI CCSGG 1 cut(s) 1191
BsaAI YACGTR 1 cut(s) 978
BsaBI GATNNNNATC 3 cut(s) 87, 252, 378
BsaI GGTCTC 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 1189
BsaWI WCCGGW 1 cut(s) 986
BsaXI ACNNNNNCTCC 4 cut(s) 151, 181, 843, 873
Bsc4I CCNNNNNNNGG 4 cut(s) 126, 193, 796, 1195
Bse1I ACTGG 4 cut(s) 145, 209, 790, 1106
Bse3DI GCAATG 1 cut(s) 1055
Bse8I GATNNNNATC 3 cut(s) 87, 252, 378
BseDI CCNNGG 1 cut(s) 1189
BseGI GGATG 2 cut(s) 576, 1217
BseJI GATNNNNATC 3 cut(s) 87, 252, 378
BseLI CCNNNNNNNGG 4 cut(s) 126, 193, 796, 1195
BseMI GCAATG 1 cut(s) 1055
BseMII CTCAG 3 cut(s) 139, 410, 1086
BseNI ACTGG 4 cut(s) 145, 209, 790, 1106
BseRI GAGGAG 2 cut(s) 856, 864
BseXI GCAGC 4 cut(s) 292, 898, 920, 993
BseYI CCCAGC 1 cut(s) 1045
BsgI GTGCAG 1 cut(s) 1000
BshFI GGCC 1 cut(s) 387
BsiHKAI GWGCWC 3 cut(s) 815, 934, 1260
BsiHKCI CYCGRG 1 cut(s) 498
BsiSI CCGG 2 cut(s) 987, 1191
BslFI GGGAC 1 cut(s) 497
BslI CCNNNNNNNGG 4 cut(s) 126, 193, 796, 1195
BsmAI GTCTC 5 cut(s) 110, 173, 300, 846, 868
BsmFI GGGAC 1 cut(s) 497
BsmI GAATGC 1 cut(s) 182
BsnI GGCC 1 cut(s) 387
Bso31I GGTCTC 1 cut(s) 110
BsoBI CYCGRG 1 cut(s) 498
Bsp1286I GDGCHC 3 cut(s) 815, 934, 1260
Bsp143I GATC 7 cut(s) 94, 225, 258, 423, 972, 1081, 1222
BspACI CCGC 2 cut(s) 109, 340
BspANI GGCC 1 cut(s) 387
BspCNI CTCAG 3 cut(s) 138, 409, 1085
BspOI GCTAGC 2 cut(s) 789, 957
BspTNI GGTCTC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 1055
BsrI ACTGG 4 cut(s) 145, 209, 790, 1106
BssECI CCNNGG 1 cut(s) 1189
BssMI GATC 7 cut(s) 94, 225, 258, 423, 972, 1081, 1222
BssSI CACGAG 2 cut(s) 191, 486
Bst2BI CACGAG 2 cut(s) 191, 486
BstBAI YACGTR 1 cut(s) 978
BstC8I GCNNGC 6 cut(s) 180, 443, 787, 942, 955, 966
BstDEI CTNAG 4 cut(s) 125, 396, 664, 1072
BstENI CCTNNNNNAGG 1 cut(s) 124
BstF5I GGATG 2 cut(s) 576, 1217
BstKTI GATC 7 cut(s) 97, 228, 261, 426, 975, 1084, 1225
BstMAI GTCTC 5 cut(s) 110, 173, 300, 846, 868
BstMBI GATC 7 cut(s) 94, 225, 258, 423, 972, 1081, 1222
BstMWI GCNNNNNNNGC 1 cut(s) 950
BstNSI RCATGY 1 cut(s) 1141
BstSCI CCNGG 1 cut(s) 1189
BstV1I GCAGC 4 cut(s) 292, 898, 920, 993
BstV2I GAAGAC 2 cut(s) 485, 1292
BstX2I RGATCY 1 cut(s) 225
BstYI RGATCY 1 cut(s) 225
BsuRI GGCC 1 cut(s) 387
BtsCI GGATG 2 cut(s) 576, 1217
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 7 cut(s) 35, 203, 216, 456, 813, 1113, 1229
Cac8I GCNNGC 6 cut(s) 180, 443, 787, 942, 955, 966
CaiI CAGNNNCTG 1 cut(s) 1079
Csp6I GTAC 1 cut(s) 1103
CspCI CAANNNNNGTGG 2 cut(s) 1174, 1209
CviAII CATG 4 cut(s) 174, 383, 404, 1138
CviQI GTAC 1 cut(s) 1103
DdeI CTNAG 4 cut(s) 125, 396, 664, 1072
DpnI GATC 7 cut(s) 96, 227, 260, 425, 974, 1083, 1224
DpnII GATC 7 cut(s) 94, 225, 258, 423, 972, 1081, 1222
DrdI GACNNNNNNGTC 1 cut(s) 860
DseDI GACNNNNNNGTC 1 cut(s) 860
EaeI YGGCCR 1 cut(s) 385
Ecl136II GAGCTC 2 cut(s) 932, 1258
Eco24I GRGCYC 2 cut(s) 934, 1260
Eco31I GGTCTC 1 cut(s) 110
Eco53kI GAGCTC 2 cut(s) 932, 1258
Eco57I CTGAAG 2 cut(s) 148, 497
Eco72I CACGTG 1 cut(s) 978
Eco88I CYCGRG 1 cut(s) 498
EcoICRI GAGCTC 2 cut(s) 932, 1258
EcoNI CCTNNNNNAGG 1 cut(s) 124
EcoT38I GRGCYC 2 cut(s) 934, 1260
FaeI CATG 4 cut(s) 177, 386, 407, 1141
FalI AAGNNNNNCTT 2 cut(s) 1147, 1179
FaqI GGGAC 1 cut(s) 497
FatI CATG 4 cut(s) 173, 382, 403, 1137
FauNDI CATATG 2 cut(s) 390, 896
FbaI TGATCA 2 cut(s) 94, 972
Fnu4HI GCNGC 4 cut(s) 306, 909, 912, 982
FokI GGATG 2 cut(s) 583, 1224
FriOI GRGCYC 2 cut(s) 934, 1260
Fsp4HI GCNGC 4 cut(s) 306, 909, 912, 982
FspBI CTAG 4 cut(s) 776, 786, 954, 1127
GluI GCNGC 4 cut(s) 306, 909, 912, 982
GsaI CCCAGC 1 cut(s) 1049
HaeIII GGCC 1 cut(s) 387
HapII CCGG 2 cut(s) 987, 1191
Hin1II CATG 4 cut(s) 177, 386, 407, 1141
HindIII AAGCTT 1 cut(s) 1161
HinfI GANTC 9 cut(s) 14, 280, 293, 394, 501, 521, 744, 750, 1088
HpaII CCGG 2 cut(s) 987, 1191
HphI GGTGA 2 cut(s) 1001, 1291
Hpy188I TCNGA 6 cut(s) 52, 258, 477, 749, 1075, 1227
Hpy188III TCNNGA 4 cut(s) 92, 488, 518, 1085
HpyAV CCTTC 4 cut(s) 197, 351, 482, 1306
HpyCH4IV ACGT 2 cut(s) 693, 977
HpyF10VI GCNNNNNNNGC 1 cut(s) 950
HpyF3I CTNAG 4 cut(s) 125, 396, 664, 1072
HpySE526I ACGT 2 cut(s) 693, 977
Hsp92II CATG 4 cut(s) 177, 386, 407, 1141
Ksp22I TGATCA 2 cut(s) 94, 972
Kzo9I GATC 7 cut(s) 94, 225, 258, 423, 972, 1081, 1222
LmnI GCTCC 2 cut(s) 159, 989
Lsp1109I GCAGC 4 cut(s) 292, 898, 920, 993
LweI GCATC 2 cut(s) 953, 982
MaeI CTAG 4 cut(s) 776, 786, 954, 1127
MaeII ACGT 2 cut(s) 693, 977
MaeIII GTNAC 2 cut(s) 778, 1168
MalI GATC 7 cut(s) 96, 227, 260, 425, 974, 1083, 1224
MboI GATC 7 cut(s) 94, 225, 258, 423, 972, 1081, 1222
MboII GAAGA 6 cut(s) 490, 749, 752, 755, 1237, 1297
MfeI CAATTG 1 cut(s) 241
MflI RGATCY 1 cut(s) 225
MhlI GDGCHC 3 cut(s) 815, 934, 1260
MlsI TGGCCA 1 cut(s) 387
MluCI AATT 4 cut(s) 241, 613, 625, 1008
MluNI TGGCCA 1 cut(s) 387
MlyI GAGTC 3 cut(s) 302, 388, 510
MmeI TCCRAC 2 cut(s) 865, 1209
MnlI CCTC 6 cut(s) 347, 525, 691, 842, 877, 1209
Mox20I TGGCCA 1 cut(s) 387
MscI TGGCCA 1 cut(s) 387
MseI TTAA 1 cut(s) 1236
MslI CAYNNNNRTG 1 cut(s) 1175
Msp20I TGGCCA 1 cut(s) 387
MspA1I CMGCKG 2 cut(s) 911, 1049
MspI CCGG 2 cut(s) 987, 1191
MspR9I CCNGG 1 cut(s) 1191
MunI CAATTG 1 cut(s) 241
Mva1269I GAATGC 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 950
NciI CCSGG 1 cut(s) 1191
NdeI CATATG 2 cut(s) 390, 896
NdeII GATC 7 cut(s) 94, 225, 258, 423, 972, 1081, 1222
NheI GCTAGC 2 cut(s) 785, 953
NlaIII CATG 4 cut(s) 177, 386, 407, 1141
NmuCI GTSAC 2 cut(s) 778, 1168
NspI RCATGY 1 cut(s) 1141
PaeR7I CTCGAG 1 cut(s) 498
PciI ACATGT 1 cut(s) 1137
PctI GAATGC 1 cut(s) 182
PfeI GAWTC 6 cut(s) 14, 280, 521, 744, 750, 1088
PflMI CCANNNNNTGG 1 cut(s) 796
PkrI GCNGC 4 cut(s) 307, 910, 913, 983
PleI GAGTC 3 cut(s) 301, 388, 509
PmaCI CACGTG 1 cut(s) 978
PmlI CACGTG 1 cut(s) 978
PpsI GAGTC 3 cut(s) 301, 388, 509
Ppu21I YACGTR 1 cut(s) 978
PscI ACATGT 1 cut(s) 1137
PshBI ATTAAT 1 cut(s) 1236
Psp124BI GAGCTC 2 cut(s) 934, 1260
PspCI CACGTG 1 cut(s) 978
PspFI CCCAGC 1 cut(s) 1045
PspXI VCTCGAGB 1 cut(s) 498
PstNI CAGNNNCTG 1 cut(s) 1079
PsuI RGATCY 1 cut(s) 225
PvuII CAGCTG 2 cut(s) 911, 1049
RsaI GTAC 1 cut(s) 1104
RsaNI GTAC 1 cut(s) 1103
RseI CAYNNNNRTG 1 cut(s) 1175
SacI GAGCTC 2 cut(s) 934, 1260
SaqAI TTAA 1 cut(s) 1236
SatI GCNGC 4 cut(s) 306, 909, 912, 982
Sau3AI GATC 7 cut(s) 94, 225, 258, 423, 972, 1081, 1222
SchI GAGTC 3 cut(s) 302, 388, 510
ScrFI CCNGG 1 cut(s) 1191
SduI GDGCHC 3 cut(s) 815, 934, 1260
SfaNI GCATC 2 cut(s) 953, 982
Sfr274I CTCGAG 1 cut(s) 498
SlaI CTCGAG 1 cut(s) 498
SmiMI CAYNNNNRTG 1 cut(s) 1175
SmlI CTYRAG 4 cut(s) 275, 498, 516, 933
SmoI CTYRAG 4 cut(s) 275, 498, 516, 933
SpeI ACTAGT 1 cut(s) 775
Sse9I AATT 4 cut(s) 241, 613, 625, 1008
SsiI CCGC 2 cut(s) 109, 340
SspI AATATT 1 cut(s) 588
SspMI CTAG 4 cut(s) 776, 786, 954, 1127
SstI GAGCTC 2 cut(s) 934, 1260
StyD4I CCNGG 1 cut(s) 1189
TaiI ACGT 2 cut(s) 696, 980
TaqI TCGA 1 cut(s) 499
TasI AATT 4 cut(s) 241, 613, 625, 1008
TfiI GAWTC 6 cut(s) 14, 280, 521, 744, 750, 1088
Tru1I TTAA 1 cut(s) 1236
Tru9I TTAA 1 cut(s) 1236
TscAI CASTG 7 cut(s) 42, 210, 216, 456, 820, 1113, 1236
TseFI GTSAC 2 cut(s) 778, 1168
TseI GCWGC 4 cut(s) 305, 908, 911, 981
Tsp45I GTSAC 2 cut(s) 778, 1168
TspDTI ATGAA 4 cut(s) 423, 513, 1044, 1122
TspGWI ACGGA 1 cut(s) 1224
TspRI CASTG 7 cut(s) 42, 210, 216, 456, 820, 1113, 1236
Van91I CCANNNNNTGG 1 cut(s) 796
VspI ATTAAT 1 cut(s) 1236
XagI CCTNNNNNAGG 1 cut(s) 124
XceI RCATGY 1 cut(s) 1141
XhoI CTCGAG 1 cut(s) 498
XspI CTAG 4 cut(s) 776, 786, 954, 1127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.