Rh7CG118000

Protein of unknown function (DUF3537)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0014739
Physical Location & Seq
Forward (+)
9038490 .. 9040171
1682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG118000.1

Sequence Viewer

Length: 1212 bp
ATGGCAATCCCAGAATCACAAGAAACCATAATCCCACTGATAGACACATCAGAAACACAAACAAAAACCGAACTAGATGATGATACCCAACTTGATCACACTCTCTACCGCTTTGAGACCTTTCTCAGGCTCTTTGGCTTCTGCCAGTATTCCTTTTGGAGCTTCAGTCTCTCATGGCTTGCATTCCTTCTCGTGGGTGTTGCACTGCCAGTGCTACTTATTGAGATCTTTCAATGTGCCAATTGTGATAAGTATCAGATCAAAAGTTTTGAGCTTGAGATTCTGGTTAGCGAGTCTCTTGTGGCTGCAAGTTCTTTGCTTTGTATTTCTCACAACCTCCGCAAGTATGGAGTAAGAAGGTTCTTGTTTGTGGATAGGTATCATGGCCATATGACTCAGTTCCATAATGAATATATACGAAAGATCAATGATTTCTTTCGCTTGCTGTCAGTGTGGCTACTACCTTGCTTCCTTCTGAAGACTGCTCGTGAAATAACTCGAGTCATTTATGTCCCTCAAGATTCATTGTGGAAATCTGTTGCTGTTTTACTTGCTTTCCTTGTGTCGTGGATGTATTCAAATGTAATATTCCTATCAGGCAGTTGTTTGTTCAATTTGGTATGCAATTTGCAAGTTATACACTTTGAGAACTATGGGAAGCTCTTAGAAATGGATATAGATGTTTCTGCATACCTTGAGGAACACATTTGTCTAACGCATTATCTGTCCAAGATTAGCCACAGATTCCGAATCTATCTTCTTCTTCAACTTTTACTTGTCACAGCTAGCCAGTTTGTGGCTCTTTTGGAGAGCACTGAAAACAGCAAAGTCATCACTCTCATCAATGGAGGAGACTTTGTAGCCTCCTCTATTGTTGAGCTTGTTGGAATAATCATATGCCTGCAAGCAGCTGCAAAGATTTCACATAGAGCTCAAGGGCTTGCATCAGTAGCTAGCAGATGGCACGCTTTGATCACTTGCAGCTCCGGTGATGCTTCCCAATTGGGAATTGACAATGATACAGAAAACTTGGGGAGTTCTTATCCAGCTGGTTCATTGCACATAAACTACTCAGAAACTGATCTGGAATCTATTGATTATGTACCAGTGCCTACAAATACACAACTAGCTTCATACATGTCCTTGTATCACAAAAGACAAGCTTTTGGTATGTCCACTAAAACTACTACTGCATTAATGCAAACCCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3537

Protein Analysis

403

Amino Acids

45.73

Weight (kDa)

5.7

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3537 PF12056 34 - 389 7.1e-126 Protein of unknown function (DUF3537)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014739)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g07730
malus_domestica MD14G1161500.v1.1
prunus_persica Prupe.5G154400_v2.0.a1
pyrus_communis pycom14g13440
rosa_chinensis RchiOBHm_Chr7g0190691
rosa_laevigata RLG00000004503
rosa_multiflora Rmu_sc0006709.1_g000002 Rmu_sc0014053.1_g000002 Rmu_sc0014053.1_g000003 Rmu_sc0026963.1_g000001
rosa_roxburghii Rroxscaffold_3G00264400
rosa_rugosa Rorug06G0506500
rosa_samantha Rh7AG113000 Rh7BG115500 Rh7CG118000 Rh7DG116900
rosa_wichuraiana Rw7G009860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 796
AciI CCGC 2 cut(s) 109, 340
AcoI YGGCCR 1 cut(s) 385
AcuI CTGAAG 2 cut(s) 148, 497
AfaI GTAC 1 cut(s) 1104
AfiI CCNNNNNNNGG 3 cut(s) 126, 193, 796
AflIII ACRYGT 1 cut(s) 1137
AgsI TTSAA 4 cut(s) 233, 579, 613, 767
Alw21I GWGCWC 2 cut(s) 815, 934
Alw26I GTCTC 4 cut(s) 110, 173, 300, 846
AlwNI CAGNNNCTG 1 cut(s) 1079
Ama87I CYCGRG 1 cut(s) 498
AoxI GGCC 1 cut(s) 385
ApeKI GCWGC 4 cut(s) 305, 908, 911, 981
AseI ATTAAT 1 cut(s) 1196
AsuHPI GGTGA 1 cut(s) 1001
AsuNHI GCTAGC 2 cut(s) 785, 953
AvaI CYCGRG 1 cut(s) 498
BalI TGGCCA 1 cut(s) 387
BanII GRGCYC 1 cut(s) 934
BauI CACGAG 2 cut(s) 191, 486
BbsI GAAGAC 1 cut(s) 485
Bbv12I GWGCWC 2 cut(s) 815, 934
BbvI GCAGC 4 cut(s) 292, 898, 920, 993
BccI CCATC 1 cut(s) 954
BclI TGATCA 2 cut(s) 94, 972
BcoDI GTCTC 4 cut(s) 110, 173, 300, 846
BfaI CTAG 5 cut(s) 74, 786, 954, 1127, 1210
BglII AGATCT 1 cut(s) 225
BisI GCNGC 4 cut(s) 306, 909, 912, 982
BlsI GCNGC 4 cut(s) 307, 910, 913, 983
BmeT110I CYCGRG 1 cut(s) 498
BmsI GCATC 2 cut(s) 953, 982
BmtI GCTAGC 2 cut(s) 789, 957
BpiI GAAGAC 1 cut(s) 485
BpuEI CTTGAG 4 cut(s) 296, 501, 716, 918
BsaBI GATNNNNATC 2 cut(s) 252, 378
BsaI GGTCTC 1 cut(s) 110
BsaWI WCCGGW 1 cut(s) 986
BsaXI ACNNNNNCTCC 4 cut(s) 151, 181, 843, 873
Bsc4I CCNNNNNNNGG 3 cut(s) 126, 193, 796
Bse1I ACTGG 4 cut(s) 145, 209, 790, 1106
Bse3DI GCAATG 1 cut(s) 1055
Bse8I GATNNNNATC 2 cut(s) 252, 378
BseGI GGATG 1 cut(s) 576
BseJI GATNNNNATC 2 cut(s) 252, 378
BseLI CCNNNNNNNGG 3 cut(s) 126, 193, 796
BseMI GCAATG 1 cut(s) 1055
BseMII CTCAG 3 cut(s) 139, 410, 1086
BseNI ACTGG 4 cut(s) 145, 209, 790, 1106
BseRI GAGGAG 2 cut(s) 856, 864
BseXI GCAGC 4 cut(s) 292, 898, 920, 993
BshFI GGCC 1 cut(s) 387
BsiHKAI GWGCWC 2 cut(s) 815, 934
BsiHKCI CYCGRG 1 cut(s) 498
BsiSI CCGG 1 cut(s) 987
BslFI GGGAC 1 cut(s) 497
BslI CCNNNNNNNGG 3 cut(s) 126, 193, 796
BsmAI GTCTC 4 cut(s) 110, 173, 300, 846
BsmFI GGGAC 1 cut(s) 497
BsmI GAATGC 1 cut(s) 182
BsnI GGCC 1 cut(s) 387
Bso31I GGTCTC 1 cut(s) 110
BsoBI CYCGRG 1 cut(s) 498
Bsp1286I GDGCHC 2 cut(s) 815, 934
Bsp143I GATC 6 cut(s) 94, 225, 258, 423, 972, 1081
BspACI CCGC 2 cut(s) 109, 340
BspANI GGCC 1 cut(s) 387
BspCNI CTCAG 3 cut(s) 138, 409, 1085
BspOI GCTAGC 2 cut(s) 789, 957
BspTNI GGTCTC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 1055
BsrI ACTGG 4 cut(s) 145, 209, 790, 1106
BssMI GATC 6 cut(s) 94, 225, 258, 423, 972, 1081
BssSI CACGAG 2 cut(s) 191, 486
Bst2BI CACGAG 2 cut(s) 191, 486
BstC8I GCNNGC 8 cut(s) 180, 443, 787, 902, 906, 942, 955, 966
BstDEI CTNAG 4 cut(s) 125, 396, 664, 1072
BstENI CCTNNNNNAGG 1 cut(s) 124
BstF5I GGATG 1 cut(s) 576
BstKTI GATC 6 cut(s) 97, 228, 261, 426, 975, 1084
BstMAI GTCTC 4 cut(s) 110, 173, 300, 846
BstMBI GATC 6 cut(s) 94, 225, 258, 423, 972, 1081
BstMWI GCNNNNNNNGC 1 cut(s) 950
BstNSI RCATGY 1 cut(s) 1141
BstV1I GCAGC 4 cut(s) 292, 898, 920, 993
BstV2I GAAGAC 1 cut(s) 485
BstX2I RGATCY 1 cut(s) 225
BstYI RGATCY 1 cut(s) 225
BsuRI GGCC 1 cut(s) 387
BtsCI GGATG 1 cut(s) 576
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 6 cut(s) 35, 203, 216, 456, 813, 1113
Cac8I GCNNGC 8 cut(s) 180, 443, 787, 902, 906, 942, 955, 966
CaiI CAGNNNCTG 1 cut(s) 1079
Csp6I GTAC 1 cut(s) 1103
CviAII CATG 3 cut(s) 174, 383, 1138
CviQI GTAC 1 cut(s) 1103
DdeI CTNAG 4 cut(s) 125, 396, 664, 1072
DpnI GATC 6 cut(s) 96, 227, 260, 425, 974, 1083
DpnII GATC 6 cut(s) 94, 225, 258, 423, 972, 1081
EaeI YGGCCR 1 cut(s) 385
Ecl136II GAGCTC 1 cut(s) 932
Eco24I GRGCYC 1 cut(s) 934
Eco31I GGTCTC 1 cut(s) 110
Eco53kI GAGCTC 1 cut(s) 932
Eco57I CTGAAG 2 cut(s) 148, 497
Eco88I CYCGRG 1 cut(s) 498
EcoICRI GAGCTC 1 cut(s) 932
EcoNI CCTNNNNNAGG 1 cut(s) 124
EcoT38I GRGCYC 1 cut(s) 934
FaeI CATG 3 cut(s) 177, 386, 1141
FalI AAGNNNNNCTT 2 cut(s) 1147, 1179
FaqI GGGAC 1 cut(s) 497
FatI CATG 3 cut(s) 173, 382, 1137
FauNDI CATATG 2 cut(s) 390, 896
FbaI TGATCA 2 cut(s) 94, 972
Fnu4HI GCNGC 4 cut(s) 306, 909, 912, 982
FokI GGATG 1 cut(s) 583
FriOI GRGCYC 1 cut(s) 934
Fsp4HI GCNGC 4 cut(s) 306, 909, 912, 982
FspBI CTAG 5 cut(s) 74, 786, 954, 1127, 1210
GluI GCNGC 4 cut(s) 306, 909, 912, 982
HaeIII GGCC 1 cut(s) 387
HapII CCGG 1 cut(s) 987
Hin1II CATG 3 cut(s) 177, 386, 1141
HindIII AAGCTT 1 cut(s) 1161
HinfI GANTC 9 cut(s) 14, 280, 293, 394, 501, 521, 744, 750, 1088
HpaII CCGG 1 cut(s) 987
HphI GGTGA 1 cut(s) 1001
Hpy166II GTNNAC 1 cut(s) 1176
Hpy188I TCNGA 5 cut(s) 52, 258, 477, 749, 1075
Hpy188III TCNNGA 3 cut(s) 488, 518, 1085
Hpy8I GTNNAC 1 cut(s) 1176
HpyAV CCTTC 3 cut(s) 197, 351, 482
HpyF10VI GCNNNNNNNGC 1 cut(s) 950
HpyF3I CTNAG 4 cut(s) 125, 396, 664, 1072
Hsp92II CATG 3 cut(s) 177, 386, 1141
Ksp22I TGATCA 2 cut(s) 94, 972
Kzo9I GATC 6 cut(s) 94, 225, 258, 423, 972, 1081
LmnI GCTCC 2 cut(s) 159, 989
Lsp1109I GCAGC 4 cut(s) 292, 898, 920, 993
LweI GCATC 2 cut(s) 953, 982
MaeI CTAG 5 cut(s) 74, 786, 954, 1127, 1210
MaeIII GTNAC 1 cut(s) 778
MalI GATC 6 cut(s) 96, 227, 260, 425, 974, 1083
MboI GATC 6 cut(s) 94, 225, 258, 423, 972, 1081
MboII GAAGA 4 cut(s) 490, 749, 752, 755
MfeI CAATTG 2 cut(s) 241, 1001
MflI RGATCY 1 cut(s) 225
MhlI GDGCHC 2 cut(s) 815, 934
MlsI TGGCCA 1 cut(s) 387
MluCI AATT 5 cut(s) 241, 613, 625, 1001, 1008
MluNI TGGCCA 1 cut(s) 387
MlyI GAGTC 3 cut(s) 302, 388, 510
MmeI TCCRAC 1 cut(s) 865
MnlI CCTC 6 cut(s) 347, 525, 691, 842, 874, 877
Mox20I TGGCCA 1 cut(s) 387
MscI TGGCCA 1 cut(s) 387
MseI TTAA 1 cut(s) 1196
Msp20I TGGCCA 1 cut(s) 387
MspA1I CMGCKG 2 cut(s) 911, 1049
MspI CCGG 1 cut(s) 987
MunI CAATTG 2 cut(s) 241, 1001
Mva1269I GAATGC 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 950
NdeI CATATG 2 cut(s) 390, 896
NdeII GATC 6 cut(s) 94, 225, 258, 423, 972, 1081
NheI GCTAGC 2 cut(s) 785, 953
NlaIII CATG 3 cut(s) 177, 386, 1141
NmuCI GTSAC 1 cut(s) 778
NspI RCATGY 1 cut(s) 1141
PaeR7I CTCGAG 1 cut(s) 498
PciI ACATGT 1 cut(s) 1137
PctI GAATGC 1 cut(s) 182
PfeI GAWTC 6 cut(s) 14, 280, 521, 744, 750, 1088
PflMI CCANNNNNTGG 1 cut(s) 796
PkrI GCNGC 4 cut(s) 307, 910, 913, 983
PleI GAGTC 3 cut(s) 301, 388, 509
PpsI GAGTC 3 cut(s) 301, 388, 509
PscI ACATGT 1 cut(s) 1137
PshBI ATTAAT 1 cut(s) 1196
Psp124BI GAGCTC 1 cut(s) 934
PspXI VCTCGAGB 1 cut(s) 498
PstNI CAGNNNCTG 1 cut(s) 1079
PsuI RGATCY 1 cut(s) 225
PvuII CAGCTG 2 cut(s) 911, 1049
RsaI GTAC 1 cut(s) 1104
RsaNI GTAC 1 cut(s) 1103
SacI GAGCTC 1 cut(s) 934
SaqAI TTAA 1 cut(s) 1196
SatI GCNGC 4 cut(s) 306, 909, 912, 982
Sau3AI GATC 6 cut(s) 94, 225, 258, 423, 972, 1081
SchI GAGTC 3 cut(s) 302, 388, 510
SduI GDGCHC 2 cut(s) 815, 934
SfaNI GCATC 2 cut(s) 953, 982
Sfr274I CTCGAG 1 cut(s) 498
SlaI CTCGAG 1 cut(s) 498
SmlI CTYRAG 5 cut(s) 275, 498, 516, 695, 933
SmoI CTYRAG 5 cut(s) 275, 498, 516, 695, 933
Sse9I AATT 5 cut(s) 241, 613, 625, 1001, 1008
SsiI CCGC 2 cut(s) 109, 340
SspI AATATT 1 cut(s) 588
SspMI CTAG 5 cut(s) 74, 786, 954, 1127, 1210
SstI GAGCTC 1 cut(s) 934
TaqI TCGA 1 cut(s) 499
TasI AATT 5 cut(s) 241, 613, 625, 1001, 1008
TfiI GAWTC 6 cut(s) 14, 280, 521, 744, 750, 1088
Tru1I TTAA 1 cut(s) 1196
Tru9I TTAA 1 cut(s) 1196
TscAI CASTG 6 cut(s) 42, 210, 216, 456, 820, 1113
TseFI GTSAC 1 cut(s) 778
TseI GCWGC 4 cut(s) 305, 908, 911, 981
Tsp45I GTSAC 1 cut(s) 778
TspDTI ATGAA 4 cut(s) 423, 513, 1044, 1122
TspRI CASTG 6 cut(s) 42, 210, 216, 456, 820, 1113
Van91I CCANNNNNTGG 1 cut(s) 796
VspI ATTAAT 1 cut(s) 1196
XagI CCTNNNNNAGG 1 cut(s) 124
XceI RCATGY 1 cut(s) 1141
XhoI CTCGAG 1 cut(s) 498
XspI CTAG 5 cut(s) 74, 786, 954, 1127, 1210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.