Rmu_sc0026963.1_g000001

Protein of unknown function (DUF3537)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026963.1
OG0014739
Physical Location & Seq
Reverse (-)
1 .. 1892
1892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026963.1_g000001.1.cds

Sequence Viewer

Length: 499 bp
atggatatagatgtttctgcatacctggaggaacacatttgtctaacgcattatctgtccaagattagccacagattccgaatctatcttcttcttcaacttttacttgtcacagctagccagtttgtggctcttttggagagcactgaaaacagcaaagtcatcactcttatcaatggaggagactttgtagtctcctctattgttgagcttgttggaataatcatatgcctgcaagcagctgcaaagatttcacatagagctcaagggcttgcatcagtagctagcagatggcacgctttgatcacgtgcagctccggtgatgcttcccaattgggaattgacaatgatacagaaaacttggggagttcttatccagctggttcattgcccataaactactcagaaactgatctggactctattgattatgtaccagtgcctacaaatacacaactagcttcatacatgtccttgtatcacaaaagacaagcttttg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3537

Protein Analysis

166

Amino Acids

18.16

Weight (kDa)

5.16

Isoelectric Point (pI)

49.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014739)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g07730
malus_domestica MD14G1161500.v1.1
prunus_persica Prupe.5G154400_v2.0.a1
pyrus_communis pycom14g13440
rosa_chinensis RchiOBHm_Chr7g0190691
rosa_laevigata RLG00000004503
rosa_multiflora Rmu_sc0006709.1_g000002 Rmu_sc0014053.1_g000002 Rmu_sc0014053.1_g000003 Rmu_sc0026963.1_g000001
rosa_roxburghii Rroxscaffold_3G00264400
rosa_rugosa Rorug06G0506500
rosa_samantha Rh7AG113000 Rh7BG115500 Rh7CG118000 Rh7DG116900
rosa_wichuraiana Rw7G009860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 191
AccB7I CCANNNNNTGG 1 cut(s) 127
AcvI CACGTG 1 cut(s) 309
AfaI GTAC 1 cut(s) 435
AfiI CCNNNNNNNGG 1 cut(s) 127
AflIII ACRYGT 1 cut(s) 468
AgsI TTSAA 1 cut(s) 98
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 9 cut(s) 116, 211, 242, 263, 284, 315, 380, 461, 494
AluI AGCT 9 cut(s) 116, 211, 242, 263, 284, 315, 380, 461, 494
Alw21I GWGCWC 2 cut(s) 146, 265
Alw26I GTCTC 2 cut(s) 177, 199
AlwNI CAGNNNCTG 1 cut(s) 410
ApeKI GCWGC 3 cut(s) 239, 242, 312
AsuHPI GGTGA 1 cut(s) 332
AsuNHI GCTAGC 2 cut(s) 116, 284
BanII GRGCYC 1 cut(s) 265
BbrPI CACGTG 1 cut(s) 309
Bbv12I GWGCWC 2 cut(s) 146, 265
BbvI GCAGC 3 cut(s) 229, 251, 324
BccI CCATC 1 cut(s) 285
BciT130I CCWGG 1 cut(s) 26
BclI TGATCA 1 cut(s) 303
BcoDI GTCTC 2 cut(s) 177, 199
BfaI CTAG 3 cut(s) 117, 285, 458
BisI GCNGC 3 cut(s) 240, 243, 313
BlsI GCNGC 3 cut(s) 241, 244, 314
Bme1390I CCNGG 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 26
BmsI GCATC 2 cut(s) 284, 313
BmtI GCTAGC 2 cut(s) 120, 288
BpmI CTGGAG 1 cut(s) 47
BpuEI CTTGAG 1 cut(s) 249
BsaAI YACGTR 1 cut(s) 309
BsaWI WCCGGW 1 cut(s) 317
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse1I ACTGG 2 cut(s) 121, 437
Bse3DI GCAATG 1 cut(s) 386
BseBI CCWGG 1 cut(s) 26
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMI GCAATG 1 cut(s) 386
BseMII CTCAG 1 cut(s) 417
BseNI ACTGG 2 cut(s) 121, 437
BseRI GAGGAG 2 cut(s) 187, 195
BseXI GCAGC 3 cut(s) 229, 251, 324
BsgI GTGCAG 1 cut(s) 331
BsiHKAI GWGCWC 2 cut(s) 146, 265
BsiSI CCGG 1 cut(s) 318
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 2 cut(s) 177, 199
Bsp1286I GDGCHC 2 cut(s) 146, 265
Bsp143I GATC 2 cut(s) 303, 412
BspCNI CTCAG 1 cut(s) 416
BspOI GCTAGC 2 cut(s) 120, 288
BsrDI GCAATG 1 cut(s) 386
BsrI ACTGG 2 cut(s) 121, 437
BssMI GATC 2 cut(s) 303, 412
Bst2UI CCWGG 1 cut(s) 26
BstBAI YACGTR 1 cut(s) 309
BstC8I GCNNGC 6 cut(s) 118, 233, 237, 273, 286, 297
BstDEI CTNAG 1 cut(s) 403
BstKTI GATC 2 cut(s) 306, 415
BstMAI GTCTC 2 cut(s) 177, 199
BstMBI GATC 2 cut(s) 303, 412
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstNI CCWGG 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 472
BstSCI CCNGG 1 cut(s) 24
BstV1I GCAGC 3 cut(s) 229, 251, 324
BtsIMutI CAGTG 2 cut(s) 144, 444
Cac8I GCNNGC 6 cut(s) 118, 233, 237, 273, 286, 297
CaiI CAGNNNCTG 1 cut(s) 410
Csp6I GTAC 1 cut(s) 434
CviAII CATG 1 cut(s) 469
CviQI GTAC 1 cut(s) 434
DdeI CTNAG 1 cut(s) 403
DpnI GATC 2 cut(s) 305, 414
DpnII GATC 2 cut(s) 303, 412
DrdI GACNNNNNNGTC 1 cut(s) 191
DseDI GACNNNNNNGTC 1 cut(s) 191
Ecl136II GAGCTC 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 263
Eco72I CACGTG 1 cut(s) 309
EcoICRI GAGCTC 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 24
EcoT38I GRGCYC 1 cut(s) 265
FaeI CATG 1 cut(s) 472
FaiI YATR 9 cut(s) 8, 22, 227, 229, 258, 395, 432, 466, 470
FalI AAGNNNNNCTT 1 cut(s) 478
FatI CATG 1 cut(s) 468
FauNDI CATATG 1 cut(s) 227
FbaI TGATCA 1 cut(s) 303
Fnu4HI GCNGC 3 cut(s) 240, 243, 313
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 3 cut(s) 240, 243, 313
FspBI CTAG 3 cut(s) 117, 285, 458
GluI GCNGC 3 cut(s) 240, 243, 313
GsuI CTGGAG 1 cut(s) 47
HapII CCGG 1 cut(s) 318
Hin1II CATG 1 cut(s) 472
HindIII AAGCTT 1 cut(s) 492
HinfI GANTC 3 cut(s) 75, 81, 419
HpaII CCGG 1 cut(s) 318
HphI GGTGA 1 cut(s) 332
Hpy188I TCNGA 2 cut(s) 80, 406
Hpy188III TCNNGA 1 cut(s) 416
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 5 cut(s) 20, 235, 245, 275, 312
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 1 cut(s) 403
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 1 cut(s) 472
Ksp22I TGATCA 1 cut(s) 303
Kzo9I GATC 2 cut(s) 303, 412
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 9 cut(s) 11, 38, 134, 245, 331, 366, 390, 401, 450
Lsp1109I GCAGC 3 cut(s) 229, 251, 324
LweI GCATC 2 cut(s) 284, 313
MaeI CTAG 3 cut(s) 117, 285, 458
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 1 cut(s) 109
MalI GATC 2 cut(s) 305, 414
MboI GATC 2 cut(s) 303, 412
MboII GAAGA 3 cut(s) 80, 83, 86
MfeI CAATTG 1 cut(s) 332
MhlI GDGCHC 2 cut(s) 146, 265
MluCI AATT 2 cut(s) 332, 339
MlyI GAGTC 1 cut(s) 413
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 3 cut(s) 22, 173, 208
MspA1I CMGCKG 2 cut(s) 242, 380
MspI CCGG 1 cut(s) 318
MspR9I CCNGG 1 cut(s) 26
MunI CAATTG 1 cut(s) 332
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 281
NdeI CATATG 1 cut(s) 227
NdeII GATC 2 cut(s) 303, 412
NheI GCTAGC 2 cut(s) 116, 284
NlaIII CATG 1 cut(s) 472
NmuCI GTSAC 1 cut(s) 109
NspI RCATGY 1 cut(s) 472
PciI ACATGT 1 cut(s) 468
PfeI GAWTC 2 cut(s) 75, 81
PflMI CCANNNNNTGG 1 cut(s) 127
PkrI GCNGC 3 cut(s) 241, 244, 314
PleI GAGTC 1 cut(s) 413
PmaCI CACGTG 1 cut(s) 309
PmlI CACGTG 1 cut(s) 309
PpsI GAGTC 1 cut(s) 413
Ppu21I YACGTR 1 cut(s) 309
PscI ACATGT 1 cut(s) 468
Psp124BI GAGCTC 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 24
PspCI CACGTG 1 cut(s) 309
PspGI CCWGG 1 cut(s) 24
PstNI CAGNNNCTG 1 cut(s) 410
PvuII CAGCTG 2 cut(s) 242, 380
RsaI GTAC 1 cut(s) 435
RsaNI GTAC 1 cut(s) 434
SacI GAGCTC 1 cut(s) 265
SatI GCNGC 3 cut(s) 240, 243, 313
Sau3AI GATC 2 cut(s) 303, 412
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 2 cut(s) 146, 265
SfaNI GCATC 2 cut(s) 284, 313
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
Sse9I AATT 2 cut(s) 332, 339
SspMI CTAG 3 cut(s) 117, 285, 458
SstI GAGCTC 1 cut(s) 265
StyD4I CCNGG 1 cut(s) 24
TaiI ACGT 1 cut(s) 311
TasI AATT 2 cut(s) 332, 339
TfiI GAWTC 2 cut(s) 75, 81
TscAI CASTG 2 cut(s) 151, 444
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 3 cut(s) 239, 242, 312
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 2 cut(s) 375, 453
TspRI CASTG 2 cut(s) 151, 444
Van91I CCANNNNNTGG 1 cut(s) 127
XceI RCATGY 1 cut(s) 472
XspI CTAG 3 cut(s) 117, 285, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.