Prupe.5G154400_v2.0.a1

Protein of unknown function (DUF3537)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0014739
Physical Location & Seq
Forward (+)
13843473 .. 13846448
2976 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G154400.1

Sequence Viewer

Length: 1311 bp
ATGGCCAACCCAAACTCACAAACAACTCAAACTCCATTGATAGATGCATCACAAACACAAACAAACCCTAGTGATGATGATGATGCCAAACTTGATCACTCTCTCCACAGCTTGGAGACCTTTCTCAGGCTCTTTGGGTTTTGCCAGTACTCTTTTCTGAGCTTCAGCCTCTCATGGCTTGCTTTCCTTCTTGTGGGTGTTGCACTTCCAGTGGTACTCATTGAAACCTCTTATAGTTCCAGCAGTGAGAAGTATCAGATCAAAAATTTTGAGTTTCAGATTCTGGTTTCTGAGACTCTTGTGGCTGCCATTTCTCTTGTTTGTATTTCTTACAACCTCAGAAAGTATGGCATACGGAGGTTCTTGTTCGTGGATAGGTATCATGGTCATAAGCTTCAGTACCGTGAGGAATATATACAGAAGATCAATAACTTCTTCCGCTTGCTGGCAGTGTGCGTATTGCCTTGCCTCCTTCTGAAGACTGCTCGTGAAGTCACTCGCGTAATTTATGTTCACTACGATTCATGGTGGAAATCTGTTCTTGCATTGCTTGCTTTGCTTGTGTCATGGACGTTTTCAACTATAATTTTCCTATCAGGCAGTGCTTTGTTCAACTTGGTGTGCAGTTTGCAAGTGATACACTTTGAGAACTATGGGAAGCTTTTGGAAAGCGACATGGATGTTTCTGCGTATATCGAAGAACACACTCGTCTAACGCATTATCTATCCAAGATCAGCCACAGATTCCGAATCTATCTTATTTTTCAAATTTTAGTTGTGACAGGCAGCCAATTTGTGGCTCTACTGCAGACCACAGGAAATCACAGAATCGTCAATCTCATCAACGGAGGCGATTTTGCAGTCGCCTCTATTGTTGAGCTTGTTGGGTTAATTATATGCCTGCATGGGGCAACAAAGATTTCACACAGAGCTCAAGGTCTTGCATCAGTTACTAGCAGATGGCATGCTGTGGTCACCTGCGGCTCCAACGATGCATCTCAATCGAGATTCGACAACAGTACGGGAAACTTGGAGATTGCTTATTCTGCTGGTTCATTACCCATAACCTACTCAGAAAGCGATCTAGAGTCAGTTGATTATGTGCCAGTGCCGACAAGTAAACAAATAGCTTCAGACAAGTCCCTCTATCAGAAAAGACAAGCTTTTGTTACATACATGCAATCAAATCCGGGTGGGCTTACCATCTATGGCTATACGGTGGATCGGGCGCTCATTGGCACCATCTTCTTTCTTGAGTTCTCACTGGCTCTCTTTGTGCTGGGGAAGACTATTACCTTCACCACCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3537

Protein Analysis

437

Amino Acids

49.04

Weight (kDa)

6.89

Isoelectric Point (pI)

30.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014739)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g07730
malus_domestica MD14G1161500.v1.1
prunus_persica Prupe.5G154400_v2.0.a1
pyrus_communis pycom14g13440
rosa_chinensis RchiOBHm_Chr7g0190691
rosa_laevigata RLG00000004503
rosa_multiflora Rmu_sc0006709.1_g000002 Rmu_sc0014053.1_g000002 Rmu_sc0014053.1_g000003 Rmu_sc0026963.1_g000001
rosa_roxburghii Rroxscaffold_3G00264400
rosa_rugosa Rorug06G0506500
rosa_samantha Rh7AG113000 Rh7BG115500 Rh7CG118000 Rh7DG116900
rosa_wichuraiana Rw7G009860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 986
Acc36I ACCTGC 1 cut(s) 986
AccB1I GGYRCC 1 cut(s) 1238
AccB7I CCANNNNNTGG 2 cut(s) 112, 796
AccII CGCG 1 cut(s) 501
AciI CCGC 2 cut(s) 439, 981
AclWI GGATC 1 cut(s) 1230
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 265, 768
AcuI CTGAAG 4 cut(s) 148, 380, 497, 1116
AfaI GTAC 4 cut(s) 149, 216, 401, 1021
AfiI CCNNNNNNNGG 6 cut(s) 112, 126, 193, 445, 796, 907
AgsI TTSAA 4 cut(s) 224, 579, 613, 767
AluBI AGCT 8 cut(s) 111, 162, 394, 661, 880, 932, 1130, 1163
AluI AGCT 8 cut(s) 111, 162, 394, 661, 880, 932, 1130, 1163
Alw21I GWGCWC 1 cut(s) 934
Alw26I GTCTC 2 cut(s) 110, 287
AlwI GGATC 1 cut(s) 1230
AlwNI CAGNNNCTG 1 cut(s) 283
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 305, 786
ApoI RAATTY 2 cut(s) 265, 768
AspLEI GCGC 1 cut(s) 1231
AsuC2I CCSGG 1 cut(s) 1191
AsuHPI GGTGA 2 cut(s) 967, 1291
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 1238
BanII GRGCYC 1 cut(s) 934
BauI CACGAG 1 cut(s) 486
BbsI GAAGAC 2 cut(s) 485, 1292
Bbv12I GWGCWC 1 cut(s) 934
BbvI GCAGC 2 cut(s) 292, 798
BccI CCATC 3 cut(s) 954, 1211, 1250
BcgI CGANNNNNNTGC 2 cut(s) 984, 1018
BclI TGATCA 1 cut(s) 94
BcnI CCSGG 1 cut(s) 1191
BcoDI GTCTC 2 cut(s) 110, 287
BfaI CTAG 3 cut(s) 69, 954, 1085
BfmI CTRYAG 1 cut(s) 806
BfoI RGCGCY 1 cut(s) 1232
BfuAI ACCTGC 1 cut(s) 986
BisI GCNGC 3 cut(s) 306, 787, 982
BlsI GCNGC 3 cut(s) 307, 788, 983
BmcAI AGTACT 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 1191
BmiI GGNNCC 2 cut(s) 985, 1240
BmrFI CCNGG 1 cut(s) 1191
BmsI GCATC 6 cut(s) 34, 56, 73, 953, 982, 1004
BpiI GAAGAC 2 cut(s) 485, 1292
BpuEI CTTGAG 2 cut(s) 918, 1274
BpuMI CCSGG 1 cut(s) 1191
BsaBI GATNNNNATC 1 cut(s) 378
BsaI GGTCTC 1 cut(s) 110
BsaXI ACNNNNNCTCC 2 cut(s) 16, 46
Bsc4I CCNNNNNNNGG 6 cut(s) 112, 126, 193, 445, 796, 907
Bse1I ACTGG 4 cut(s) 145, 209, 1106, 1269
Bse3DI GCAATG 1 cut(s) 545
Bse8I GATNNNNATC 1 cut(s) 378
BseGI GGATG 1 cut(s) 685
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 6 cut(s) 112, 126, 193, 445, 796, 907
BseMI GCAATG 1 cut(s) 545
BseMII CTCAG 5 cut(s) 139, 149, 282, 352, 1086
BseNI ACTGG 4 cut(s) 145, 209, 1106, 1269
BseXI GCAGC 2 cut(s) 292, 798
BseYI CCCAGC 1 cut(s) 1279
BsgI GTGCAG 1 cut(s) 643
Bsh1236I CGCG 1 cut(s) 501
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 1238
BsiHKAI GWGCWC 1 cut(s) 934
BsiSI CCGG 1 cut(s) 1190
BslFI GGGAC 1 cut(s) 1126
BslI CCNNNNNNNGG 6 cut(s) 112, 126, 193, 445, 796, 907
BsmAI GTCTC 2 cut(s) 110, 287
BsmFI GGGAC 1 cut(s) 1126
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 934
Bsp143I GATC 6 cut(s) 94, 258, 423, 732, 1081, 1222
BspACI CCGC 2 cut(s) 439, 981
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 5 cut(s) 138, 150, 283, 351, 1085
BspFNI CGCG 1 cut(s) 501
BspLI GGNNCC 2 cut(s) 985, 1240
BspMAI CTGCAG 1 cut(s) 810
BspMI ACCTGC 1 cut(s) 986
BspPI GGATC 1 cut(s) 1230
BspT107I GGYRCC 1 cut(s) 1238
BspTNI GGTCTC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 545
BsrI ACTGG 4 cut(s) 145, 209, 1106, 1269
BssMI GATC 6 cut(s) 94, 258, 423, 732, 1081, 1222
BssSI CACGAG 1 cut(s) 486
Bst2BI CACGAG 1 cut(s) 486
Bst4CI ACNGT 3 cut(s) 404, 1019, 1219
BstAPI GCANNNNNTGC 1 cut(s) 551
BstC8I GCNNGC 6 cut(s) 180, 443, 447, 552, 902, 966
BstDEI CTNAG 5 cut(s) 125, 158, 291, 338, 1072
BstEII GGTNACC 1 cut(s) 973
BstENI CCTNNNNNAGG 1 cut(s) 124
BstF5I GGATG 1 cut(s) 685
BstFNI CGCG 1 cut(s) 501
BstH2I RGCGCY 1 cut(s) 1232
BstHHI GCGC 1 cut(s) 1231
BstKTI GATC 6 cut(s) 97, 261, 426, 735, 1084, 1225
BstMAI GTCTC 2 cut(s) 110, 287
BstMBI GATC 6 cut(s) 94, 258, 423, 732, 1081, 1222
BstMWI GCNNNNNNNGC 3 cut(s) 551, 556, 1046
BstNSI RCATGY 2 cut(s) 968, 1180
BstPI GGTNACC 1 cut(s) 973
BstSCI CCNGG 1 cut(s) 1189
BstSFI CTRYAG 1 cut(s) 806
BstUI CGCG 1 cut(s) 501
BstV1I GCAGC 2 cut(s) 292, 798
BstV2I GAAGAC 2 cut(s) 485, 1292
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 685
BtsI GCAGTG 3 cut(s) 250, 456, 607
BtsIMutI CAGTG 6 cut(s) 216, 250, 456, 607, 1113, 1262
BveI ACCTGC 1 cut(s) 986
Cac8I GCNNGC 6 cut(s) 180, 443, 447, 552, 902, 966
CaiI CAGNNNCTG 1 cut(s) 283
CfoI GCGC 1 cut(s) 1231
Csp6I GTAC 4 cut(s) 148, 215, 400, 1020
CviAII CATG 9 cut(s) 174, 383, 525, 567, 676, 905, 965, 1177, 1308
CviQI GTAC 4 cut(s) 148, 215, 400, 1020
DdeI CTNAG 5 cut(s) 125, 158, 291, 338, 1072
DpnI GATC 6 cut(s) 96, 260, 425, 734, 1083, 1224
DpnII GATC 6 cut(s) 94, 258, 423, 732, 1081, 1222
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 932
Eco24I GRGCYC 1 cut(s) 934
Eco31I GGTCTC 1 cut(s) 110
Eco53kI GAGCTC 1 cut(s) 932
Eco57I CTGAAG 4 cut(s) 148, 380, 497, 1116
Eco91I GGTNACC 1 cut(s) 973
EcoICRI GAGCTC 1 cut(s) 932
EcoNI CCTNNNNNAGG 1 cut(s) 124
EcoO65I GGTNACC 1 cut(s) 973
EcoT22I ATGCAT 2 cut(s) 49, 997
EcoT38I GRGCYC 1 cut(s) 934
FaeI CATG 9 cut(s) 177, 386, 528, 570, 679, 908, 968, 1180, 1311
FalI AAGNNNNNCTT 2 cut(s) 1147, 1179
FaqI GGGAC 1 cut(s) 1126
FatI CATG 9 cut(s) 173, 382, 524, 566, 675, 904, 964, 1176, 1307
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 3 cut(s) 306, 787, 982
FokI GGATG 1 cut(s) 692
FriOI GRGCYC 1 cut(s) 934
Fsp4HI GCNGC 3 cut(s) 306, 787, 982
FspBI CTAG 3 cut(s) 69, 954, 1085
GlaI GCGC 1 cut(s) 1230
GluI GCNGC 3 cut(s) 306, 787, 982
GsaI CCCAGC 1 cut(s) 1283
HaeII RGCGCY 1 cut(s) 1232
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 1190
HhaI GCGC 1 cut(s) 1231
Hin1II CATG 9 cut(s) 177, 386, 528, 570, 679, 908, 968, 1180, 1311
Hin6I GCGC 1 cut(s) 1229
HinP1I GCGC 1 cut(s) 1229
HindIII AAGCTT 3 cut(s) 392, 659, 1161
HinfI GANTC 8 cut(s) 280, 295, 521, 744, 750, 828, 1008, 1088
HpaII CCGG 1 cut(s) 1190
HphI GGTGA 2 cut(s) 967, 1291
Hpy166II GTNNAC 2 cut(s) 514, 1121
Hpy188III TCNNGA 4 cut(s) 488, 1005, 1085, 1253
Hpy8I GTNNAC 2 cut(s) 514, 1121
HpyAV CCTTC 3 cut(s) 197, 482, 1306
HpyCH4III ACNGT 3 cut(s) 404, 1019, 1219
HpyCH4IV ACGT 1 cut(s) 572
HpyF10VI GCNNNNNNNGC 3 cut(s) 551, 556, 1046
HpyF3I CTNAG 5 cut(s) 125, 158, 291, 338, 1072
HpySE526I ACGT 1 cut(s) 572
Hsp92II CATG 9 cut(s) 177, 386, 528, 570, 679, 908, 968, 1180, 1311
HspAI GCGC 1 cut(s) 1229
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 6 cut(s) 94, 258, 423, 732, 1081, 1222
LmnI GCTCC 1 cut(s) 989
Lsp1109I GCAGC 2 cut(s) 292, 798
LweI GCATC 6 cut(s) 34, 56, 73, 953, 982, 1004
MaeI CTAG 3 cut(s) 69, 954, 1085
MaeII ACGT 1 cut(s) 572
MaeIII GTNAC 5 cut(s) 493, 778, 949, 973, 1168
MalI GATC 6 cut(s) 96, 260, 425, 734, 1083, 1224
MboI GATC 6 cut(s) 94, 258, 423, 732, 1081, 1222
MboII GAAGA 6 cut(s) 427, 433, 490, 710, 1237, 1297
MhlI GDGCHC 1 cut(s) 934
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 265, 504, 585, 768, 791, 891
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 289, 1097
MmeI TCCRAC 1 cut(s) 1011
MnlI CCTC 9 cut(s) 179, 238, 347, 351, 400, 479, 842, 877, 1154
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 2 cut(s) 49, 997
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 890
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 1190
MspR9I CCNGG 1 cut(s) 1191
MvnI CGCG 1 cut(s) 501
MwoI GCNNNNNNNGC 3 cut(s) 551, 556, 1046
NciI CCSGG 1 cut(s) 1191
NdeII GATC 6 cut(s) 94, 258, 423, 732, 1081, 1222
NlaIII CATG 9 cut(s) 177, 386, 528, 570, 679, 908, 968, 1180, 1311
NlaIV GGNNCC 2 cut(s) 985, 1240
NmuCI GTSAC 3 cut(s) 493, 778, 973
NsiI ATGCAT 2 cut(s) 49, 997
NspI RCATGY 2 cut(s) 968, 1180
PaeI GCATGC 1 cut(s) 968
PaqCI CACCTGC 1 cut(s) 986
PfeI GAWTC 6 cut(s) 280, 521, 744, 750, 828, 1008
PflMI CCANNNNNTGG 2 cut(s) 112, 796
PkrI GCNGC 3 cut(s) 307, 788, 983
PleI GAGTC 2 cut(s) 289, 1096
PpsI GAGTC 2 cut(s) 289, 1096
Psp124BI GAGCTC 1 cut(s) 934
PspEI GGTNACC 1 cut(s) 973
PspFI CCCAGC 1 cut(s) 1279
PspN4I GGNNCC 2 cut(s) 985, 1240
PsrI GAACNNNNNNTAC 2 cut(s) 495, 527
PstI CTGCAG 1 cut(s) 810
PstNI CAGNNNCTG 1 cut(s) 283
RsaI GTAC 4 cut(s) 149, 216, 401, 1021
RsaNI GTAC 4 cut(s) 148, 215, 400, 1020
SacI GAGCTC 1 cut(s) 934
SaqAI TTAA 1 cut(s) 890
SatI GCNGC 3 cut(s) 306, 787, 982
Sau3AI GATC 6 cut(s) 94, 258, 423, 732, 1081, 1222
ScaI AGTACT 1 cut(s) 149
SchI GAGTC 2 cut(s) 289, 1097
ScrFI CCNGG 1 cut(s) 1191
SduI GDGCHC 1 cut(s) 934
SfaNI GCATC 6 cut(s) 34, 56, 73, 953, 982, 1004
SfcI CTRYAG 1 cut(s) 806
SmlI CTYRAG 2 cut(s) 933, 1253
SmoI CTYRAG 2 cut(s) 933, 1253
SphI GCATGC 1 cut(s) 968
Sse9I AATT 6 cut(s) 265, 504, 585, 768, 791, 891
SsiI CCGC 2 cut(s) 439, 981
SspMI CTAG 3 cut(s) 69, 954, 1085
SstI GAGCTC 1 cut(s) 934
StyD4I CCNGG 1 cut(s) 1189
TaaI ACNGT 3 cut(s) 404, 1019, 1219
TaiI ACGT 1 cut(s) 575
TaqI TCGA 3 cut(s) 696, 1004, 1011
TasI AATT 6 cut(s) 265, 504, 585, 768, 791, 891
TatI WGTACW 1 cut(s) 147
TauI GCSGC 1 cut(s) 984
TfiI GAWTC 6 cut(s) 280, 521, 744, 750, 828, 1008
Tru1I TTAA 1 cut(s) 890
Tru9I TTAA 1 cut(s) 890
TscAI CASTG 6 cut(s) 216, 250, 456, 607, 1113, 1269
TseFI GTSAC 3 cut(s) 493, 778, 973
TseI GCWGC 2 cut(s) 305, 786
Tsp45I GTSAC 3 cut(s) 493, 778, 973
TspDTI ATGAA 2 cut(s) 513, 1044
TspGWI ACGGA 2 cut(s) 370, 861
TspRI CASTG 6 cut(s) 216, 250, 456, 607, 1113, 1269
Van91I CCANNNNNTGG 2 cut(s) 112, 796
XagI CCTNNNNNAGG 1 cut(s) 124
XapI RAATTY 2 cut(s) 265, 768
XbaI TCTAGA 1 cut(s) 1084
XceI RCATGY 2 cut(s) 968, 1180
XspI CTAG 3 cut(s) 69, 954, 1085
ZrmI AGTACT 1 cut(s) 149
Zsp2I ATGCAT 2 cut(s) 49, 997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.