Rmu_sc0014053.1_g000002

Protein of unknown function (DUF3537)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014053.1
OG0014739
Physical Location & Seq
Reverse (-)
6953 .. 8848
1896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014053.1_g000002.1.cds

Sequence Viewer

Length: 879 bp
atggcaatcccagaatcacaagaaaccataatcccactgatagacacatcagaaacacaaacaaaaacagaactagatgatgatacccaacttgatcacactctctaccgctttgagacctttctcaggctctttggcttctgccagtattccttttggagcttcagtctctcatggcttgcattccttctcgtgggtgttgtactgccagtgctacttattgggatctttcaatgttccaattgtgataagtatcagatcaaaagttttgagcttgagattctggttagcgagtctcttgtggctgcaagttctttgctttgtatttctcacaacctccgcaagtatggagtaagaaggttcttgtttgtggatagatatcatggccatatgactccgttccatgatgaatatatgcgaaagatcaatgtctcctctattgttgagcttgttggaataatcatatgcctgcaagcagctgcaaagatttcacatagagctcaagggcttgcatcagtagctagcagatggcacgctttgatcacgtgcagctccggtgatgcttcccaattgggaattgacaatgatacagaaaacttggggagttcttatccagctggttcattgcccataaactactcagaaactgatctggactctattgattatgtaccagtgcctacaaatacacaactagcttcatacatgtccttgtatcacaaaagacaagcttttgtcacttatatgcagtccaaccccggtggggctactatatacggatggaggattgatcgggcactgattaatactatcttctttgttgagctctcactcgttctttttgtgcttgggaagacgataaccttcaccactaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3537

Protein Analysis

292

Amino Acids

32.89

Weight (kDa)

5.58

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014739)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g07730
malus_domestica MD14G1161500.v1.1
prunus_persica Prupe.5G154400_v2.0.a1
pyrus_communis pycom14g13440
rosa_chinensis RchiOBHm_Chr7g0190691
rosa_laevigata RLG00000004503
rosa_multiflora Rmu_sc0006709.1_g000002 Rmu_sc0014053.1_g000002 Rmu_sc0014053.1_g000003 Rmu_sc0026963.1_g000001
rosa_roxburghii Rroxscaffold_3G00264400
rosa_rugosa Rorug06G0506500
rosa_samantha Rh7AG113000 Rh7BG115500 Rh7CG118000 Rh7DG116900
rosa_wichuraiana Rw7G009860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 109, 340
AclWI GGATC 1 cut(s) 233
AcoI YGGCCR 1 cut(s) 385
AcuI CTGAAG 1 cut(s) 148
AcvI CACGTG 1 cut(s) 546
AfaI GTAC 2 cut(s) 204, 672
AfiI CCNNNNNNNGG 3 cut(s) 126, 193, 763
AflIII ACRYGT 1 cut(s) 705
AgsI TTSAA 1 cut(s) 233
Alw21I GWGCWC 2 cut(s) 502, 828
Alw26I GTCTC 4 cut(s) 110, 173, 300, 436
AlwI GGATC 1 cut(s) 233
AlwNI CAGNNNCTG 1 cut(s) 647
AoxI GGCC 1 cut(s) 385
ApeKI GCWGC 4 cut(s) 305, 476, 479, 549
AseI ATTAAT 1 cut(s) 804
AsuC2I CCSGG 1 cut(s) 759
AsuHPI GGTGA 2 cut(s) 569, 859
AsuNHI GCTAGC 1 cut(s) 521
BaeGI GKGCMC 1 cut(s) 799
BalI TGGCCA 1 cut(s) 387
BanII GRGCYC 2 cut(s) 502, 828
BauI CACGAG 1 cut(s) 191
BbrPI CACGTG 1 cut(s) 546
BbsI GAAGAC 1 cut(s) 860
Bbv12I GWGCWC 2 cut(s) 502, 828
BbvI GCAGC 4 cut(s) 292, 466, 488, 561
BccI CCATC 2 cut(s) 522, 774
BclI TGATCA 2 cut(s) 94, 540
BcnI CCSGG 1 cut(s) 759
BcoDI GTCTC 4 cut(s) 110, 173, 300, 436
BfaI CTAG 3 cut(s) 74, 522, 695
BisI GCNGC 4 cut(s) 306, 477, 480, 550
BlsI GCNGC 4 cut(s) 307, 478, 481, 551
Bme1390I CCNGG 1 cut(s) 759
BmrFI CCNGG 1 cut(s) 759
BmsI GCATC 2 cut(s) 521, 550
BmtI GCTAGC 1 cut(s) 525
BpiI GAAGAC 1 cut(s) 860
BpuEI CTTGAG 2 cut(s) 296, 486
BpuMI CCSGG 1 cut(s) 759
BsaAI YACGTR 1 cut(s) 546
BsaBI GATNNNNATC 2 cut(s) 252, 378
BsaI GGTCTC 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 757
BsaWI WCCGGW 1 cut(s) 554
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bsc4I CCNNNNNNNGG 3 cut(s) 126, 193, 763
Bse1I ACTGG 3 cut(s) 145, 209, 674
Bse3DI GCAATG 1 cut(s) 623
Bse8I GATNNNNATC 2 cut(s) 252, 378
BseDI CCNNGG 1 cut(s) 757
BseGI GGATG 1 cut(s) 785
BseJI GATNNNNATC 2 cut(s) 252, 378
BseLI CCNNNNNNNGG 3 cut(s) 126, 193, 763
BseMI GCAATG 1 cut(s) 623
BseMII CTCAG 2 cut(s) 139, 654
BseNI ACTGG 3 cut(s) 145, 209, 674
BseRI GAGGAG 1 cut(s) 424
BseSI GKGCMC 1 cut(s) 799
BseXI GCAGC 4 cut(s) 292, 466, 488, 561
BsgI GTGCAG 1 cut(s) 568
BshFI GGCC 1 cut(s) 387
BsiHKAI GWGCWC 2 cut(s) 502, 828
BsiSI CCGG 2 cut(s) 555, 759
BslI CCNNNNNNNGG 3 cut(s) 126, 193, 763
BsmAI GTCTC 4 cut(s) 110, 173, 300, 436
BsmI GAATGC 1 cut(s) 182
BsnI GGCC 1 cut(s) 387
Bso31I GGTCTC 1 cut(s) 110
Bsp1286I GDGCHC 3 cut(s) 502, 799, 828
Bsp143I GATC 7 cut(s) 94, 225, 258, 423, 540, 649, 790
BspACI CCGC 2 cut(s) 109, 340
BspANI GGCC 1 cut(s) 387
BspCNI CTCAG 2 cut(s) 138, 653
BspOI GCTAGC 1 cut(s) 525
BspPI GGATC 1 cut(s) 233
BspTNI GGTCTC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 623
BsrI ACTGG 3 cut(s) 145, 209, 674
BssECI CCNNGG 1 cut(s) 757
BssMI GATC 7 cut(s) 94, 225, 258, 423, 540, 649, 790
BssSI CACGAG 1 cut(s) 191
Bst2BI CACGAG 1 cut(s) 191
BstBAI YACGTR 1 cut(s) 546
BstC8I GCNNGC 6 cut(s) 180, 470, 474, 510, 523, 534
BstDEI CTNAG 2 cut(s) 125, 640
BstENI CCTNNNNNAGG 1 cut(s) 124
BstF5I GGATG 1 cut(s) 785
BstKTI GATC 7 cut(s) 97, 228, 261, 426, 543, 652, 793
BstMAI GTCTC 4 cut(s) 110, 173, 300, 436
BstMBI GATC 7 cut(s) 94, 225, 258, 423, 540, 649, 790
BstMWI GCNNNNNNNGC 1 cut(s) 518
BstNSI RCATGY 1 cut(s) 709
BstSCI CCNGG 1 cut(s) 757
BstSLI GKGCMC 1 cut(s) 799
BstV1I GCAGC 4 cut(s) 292, 466, 488, 561
BstV2I GAAGAC 1 cut(s) 860
BstX2I RGATCY 1 cut(s) 225
BstYI RGATCY 1 cut(s) 225
BsuRI GGCC 1 cut(s) 387
BtsCI GGATG 1 cut(s) 785
BtsIMutI CAGTG 4 cut(s) 35, 216, 681, 797
Cac8I GCNNGC 6 cut(s) 180, 470, 474, 510, 523, 534
CaiI CAGNNNCTG 1 cut(s) 647
Csp6I GTAC 2 cut(s) 203, 671
CspCI CAANNNNNGTGG 2 cut(s) 742, 777
CviAII CATG 4 cut(s) 174, 383, 404, 706
CviQI GTAC 2 cut(s) 203, 671
DdeI CTNAG 2 cut(s) 125, 640
DpnI GATC 7 cut(s) 96, 227, 260, 425, 542, 651, 792
DpnII GATC 7 cut(s) 94, 225, 258, 423, 540, 649, 790
EaeI YGGCCR 1 cut(s) 385
Ecl136II GAGCTC 2 cut(s) 500, 826
Eco24I GRGCYC 2 cut(s) 502, 828
Eco31I GGTCTC 1 cut(s) 110
Eco32I GATATC 1 cut(s) 380
Eco53kI GAGCTC 2 cut(s) 500, 826
Eco57I CTGAAG 1 cut(s) 148
Eco72I CACGTG 1 cut(s) 546
EcoICRI GAGCTC 2 cut(s) 500, 826
EcoNI CCTNNNNNAGG 1 cut(s) 124
EcoRV GATATC 1 cut(s) 380
EcoT38I GRGCYC 2 cut(s) 502, 828
FaeI CATG 4 cut(s) 177, 386, 407, 709
FalI AAGNNNNNCTT 2 cut(s) 715, 747
FatI CATG 4 cut(s) 173, 382, 403, 705
FauNDI CATATG 2 cut(s) 390, 464
FbaI TGATCA 2 cut(s) 94, 540
Fnu4HI GCNGC 4 cut(s) 306, 477, 480, 550
FokI GGATG 1 cut(s) 792
FriOI GRGCYC 2 cut(s) 502, 828
Fsp4HI GCNGC 4 cut(s) 306, 477, 480, 550
FspBI CTAG 3 cut(s) 74, 522, 695
GluI GCNGC 4 cut(s) 306, 477, 480, 550
HaeIII GGCC 1 cut(s) 387
HapII CCGG 2 cut(s) 555, 759
Hin1II CATG 4 cut(s) 177, 386, 407, 709
HindIII AAGCTT 1 cut(s) 729
HinfI GANTC 5 cut(s) 14, 280, 293, 394, 656
HpaII CCGG 2 cut(s) 555, 759
HphI GGTGA 2 cut(s) 569, 859
Hpy188I TCNGA 3 cut(s) 52, 258, 643
Hpy188III TCNNGA 1 cut(s) 653
HpyAV CCTTC 3 cut(s) 197, 351, 874
HpyCH4IV ACGT 1 cut(s) 545
HpyCH4V TGCA 7 cut(s) 182, 308, 472, 482, 512, 549, 748
HpyF10VI GCNNNNNNNGC 1 cut(s) 518
HpyF3I CTNAG 2 cut(s) 125, 640
HpySE526I ACGT 1 cut(s) 545
Hsp92II CATG 4 cut(s) 177, 386, 407, 709
Ksp22I TGATCA 2 cut(s) 94, 540
Kzo9I GATC 7 cut(s) 94, 225, 258, 423, 540, 649, 790
LmnI GCTCC 2 cut(s) 159, 557
Lsp1109I GCAGC 4 cut(s) 292, 466, 488, 561
LweI GCATC 2 cut(s) 521, 550
MaeI CTAG 3 cut(s) 74, 522, 695
MaeII ACGT 1 cut(s) 545
MaeIII GTNAC 1 cut(s) 736
MalI GATC 7 cut(s) 96, 227, 260, 425, 542, 651, 792
MboI GATC 7 cut(s) 94, 225, 258, 423, 540, 649, 790
MboII GAAGA 2 cut(s) 805, 865
MfeI CAATTG 2 cut(s) 241, 569
MflI RGATCY 1 cut(s) 225
MhlI GDGCHC 3 cut(s) 502, 799, 828
MlsI TGGCCA 1 cut(s) 387
MluCI AATT 3 cut(s) 241, 569, 576
MluNI TGGCCA 1 cut(s) 387
MlyI GAGTC 3 cut(s) 302, 388, 650
MmeI TCCRAC 2 cut(s) 433, 777
MnlI CCTC 3 cut(s) 347, 445, 777
Mox20I TGGCCA 1 cut(s) 387
MscI TGGCCA 1 cut(s) 387
MseI TTAA 1 cut(s) 804
MslI CAYNNNNRTG 1 cut(s) 743
Msp20I TGGCCA 1 cut(s) 387
MspA1I CMGCKG 2 cut(s) 479, 617
MspI CCGG 2 cut(s) 555, 759
MspR9I CCNGG 1 cut(s) 759
MunI CAATTG 2 cut(s) 241, 569
Mva1269I GAATGC 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 518
NciI CCSGG 1 cut(s) 759
NdeI CATATG 2 cut(s) 390, 464
NdeII GATC 7 cut(s) 94, 225, 258, 423, 540, 649, 790
NheI GCTAGC 1 cut(s) 521
NlaIII CATG 4 cut(s) 177, 386, 407, 709
NmuCI GTSAC 1 cut(s) 736
NspI RCATGY 1 cut(s) 709
PciI ACATGT 1 cut(s) 705
PctI GAATGC 1 cut(s) 182
PfeI GAWTC 2 cut(s) 14, 280
PkrI GCNGC 4 cut(s) 307, 478, 481, 551
PleI GAGTC 3 cut(s) 301, 388, 650
PmaCI CACGTG 1 cut(s) 546
PmlI CACGTG 1 cut(s) 546
PpsI GAGTC 3 cut(s) 301, 388, 650
Ppu21I YACGTR 1 cut(s) 546
PscI ACATGT 1 cut(s) 705
PshBI ATTAAT 1 cut(s) 804
Psp124BI GAGCTC 2 cut(s) 502, 828
PspCI CACGTG 1 cut(s) 546
PstNI CAGNNNCTG 1 cut(s) 647
PsuI RGATCY 1 cut(s) 225
PvuII CAGCTG 2 cut(s) 479, 617
RsaI GTAC 2 cut(s) 204, 672
RsaNI GTAC 2 cut(s) 203, 671
RseI CAYNNNNRTG 1 cut(s) 743
SacI GAGCTC 2 cut(s) 502, 828
SaqAI TTAA 1 cut(s) 804
SatI GCNGC 4 cut(s) 306, 477, 480, 550
Sau3AI GATC 7 cut(s) 94, 225, 258, 423, 540, 649, 790
SchI GAGTC 3 cut(s) 302, 388, 650
ScrFI CCNGG 1 cut(s) 759
SduI GDGCHC 3 cut(s) 502, 799, 828
SfaNI GCATC 2 cut(s) 521, 550
SmiMI CAYNNNNRTG 1 cut(s) 743
SmlI CTYRAG 2 cut(s) 275, 501
SmoI CTYRAG 2 cut(s) 275, 501
Sse9I AATT 3 cut(s) 241, 569, 576
SsiI CCGC 2 cut(s) 109, 340
SspMI CTAG 3 cut(s) 74, 522, 695
SstI GAGCTC 2 cut(s) 502, 828
StyD4I CCNGG 1 cut(s) 757
TaiI ACGT 1 cut(s) 548
TasI AATT 3 cut(s) 241, 569, 576
TatI WGTACW 1 cut(s) 202
TfiI GAWTC 2 cut(s) 14, 280
Tru1I TTAA 1 cut(s) 804
Tru9I TTAA 1 cut(s) 804
TscAI CASTG 4 cut(s) 42, 216, 681, 804
TseFI GTSAC 1 cut(s) 736
TseI GCWGC 4 cut(s) 305, 476, 479, 549
Tsp45I GTSAC 1 cut(s) 736
TspDTI ATGAA 3 cut(s) 423, 612, 690
TspGWI ACGGA 2 cut(s) 387, 792
TspRI CASTG 4 cut(s) 42, 216, 681, 804
VspI ATTAAT 1 cut(s) 804
XagI CCTNNNNNAGG 1 cut(s) 124
XceI RCATGY 1 cut(s) 709
XspI CTAG 3 cut(s) 74, 522, 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.