Rorug06G0506500

Protein of unknown function (DUF3537)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0014739
Physical Location & Seq
Forward (+)
62168495 .. 62169424
930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0506500.1

Sequence Viewer

Length: 930 bp
ATGGGAGGTCGGTGGGTTATTTTTCTTGTGGCCGTGGAGTGCGCCAAGGATCCTTTGTCCCCTCTTCTTTTCTGCTTGGCAGAAGAGGTTCTTAGTAGGGGTCTCTCTGAGTTGTTGAGTAGTGGTCGGTTGCACCCTATTTCTTCCCCAAGGGGGGCATTGGCTCCTTCACATGTTTTATTTGCTGATGATGTGATAGTTTTCTGTCGAGGAGATAAACGCAGTTTGGAGTTGGTTATGACTTTCTTTGAGGAGTATGGGGTTAATTCAGGGCAAAGAATTAACAAGTCTATGTCTCAGGCTTTTCTTAGCAGACACATTCTTTACCGAAGGCATTCTATTAGTAGTTCTCTCAGCATTCCTATTGGGGAGTTTCCTTTCTCTTATCTAGGTGTGCCTATTTTCCGTGGGAAGCCTCGTGTCTCATATTTCCGGCCTTTGGTGGATAAAATTCGGGTGCGTCTCTCTAGTTGGATGGGTTCTCTACTCTCTATGGCAGGCCGTCTTCAATTGTTAAAATCGGTTTTTAACAGCATGCTTGTTTATAGTTTCCAAGTGTATGAATGGCCTATTTCTTTGTTGCGTCGGATGGAAGTCTGGTGTCGCAATTACCTATGGTCTGGCTCTATTGATAAGCGTGGTATCCCTTTAATTGCTTGGAAAACTTGTTGTTCACCGGTGGAGGAGGGTGGGCTAGGCCTTAAGCAGTTGATTGTTCTTAATTGCTCTCTCCTTCTTAAGCGGAGTTGGGAGGTTTTTTCTTCTCCTTCATTGGGTAGTTCTTTTCTTCGAGGTCGGTTTTGCCGTAATGGAGTTTTGCGTCGTTCATATGCTAGTTCCTCTATCTGGCCGGGTGTGAGGCGCTTCTGGGATCTAATTCAGGAGAACTCAAGGTGGATTATTGCCTCGGGTGAGAAAATTTCTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3537

Protein Analysis

309

Amino Acids

35.13

Weight (kDa)

10.0

Isoelectric Point (pI)

56.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 18 - 134 7.7e-06 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014739)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g07730
malus_domestica MD14G1161500.v1.1
prunus_persica Prupe.5G154400_v2.0.a1
pyrus_communis pycom14g13440
rosa_chinensis RchiOBHm_Chr7g0190691
rosa_laevigata RLG00000004503
rosa_multiflora Rmu_sc0006709.1_g000002 Rmu_sc0014053.1_g000002 Rmu_sc0014053.1_g000003 Rmu_sc0026963.1_g000001
rosa_roxburghii Rroxscaffold_3G00264400
rosa_rugosa Rorug06G0506500
rosa_samantha Rh7AG113000 Rh7BG115500 Rh7CG118000 Rh7DG116900
rosa_wichuraiana Rw7G009860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 742
AclWI GGATC 3 cut(s) 44, 57, 879
AcoI YGGCCR 2 cut(s) 30, 848
AcsI RAATTY 2 cut(s) 450, 918
AfiI CCNNNNNNNGG 5 cut(s) 153, 154, 439, 773, 846
AflII CTTAAG 2 cut(s) 701, 737
AflIII ACRYGT 1 cut(s) 172
AgeI ACCGGT 1 cut(s) 676
AgsI TTSAA 1 cut(s) 509
Alw26I GTCTC 4 cut(s) 107, 300, 427, 467
AlwI GGATC 3 cut(s) 44, 57, 879
Ama87I CYCGRG 1 cut(s) 907
AoxI GGCC 6 cut(s) 30, 434, 499, 566, 697, 848
ApoI RAATTY 2 cut(s) 450, 918
AsiGI ACCGGT 1 cut(s) 676
Asp700I GAANNNNTTC 2 cut(s) 87, 334
AspLEI GCGC 2 cut(s) 44, 864
AsuC2I CCSGG 1 cut(s) 852
AsuHPI GGTGA 2 cut(s) 666, 923
AvaI CYCGRG 1 cut(s) 907
BamHI GGATCC 1 cut(s) 49
BauI CACGAG 1 cut(s) 417
BbsI GAAGAC 1 cut(s) 497
BccI CCATC 2 cut(s) 469, 583
BceAI ACGGC 3 cut(s) 17, 486, 789
BciVI GTATCC 1 cut(s) 653
BcnI CCSGG 1 cut(s) 852
BcoDI GTCTC 4 cut(s) 107, 300, 427, 467
BfaI CTAG 5 cut(s) 389, 468, 695, 834, 928
BfoI RGCGCY 1 cut(s) 865
BfrI CTTAAG 2 cut(s) 701, 737
BfuI GTATCC 1 cut(s) 653
Bme1390I CCNGG 1 cut(s) 852
BmeT110I CYCGRG 1 cut(s) 907
BmiI GGNNCC 2 cut(s) 51, 165
BmrFI CCNGG 1 cut(s) 852
BpiI GAAGAC 1 cut(s) 497
BpuEI CTTGAG 1 cut(s) 874
BpuMI CCSGG 1 cut(s) 852
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 5 cut(s) 33, 45, 149, 406, 906
BsaWI WCCGGW 1 cut(s) 676
Bsc4I CCNNNNNNNGG 5 cut(s) 153, 154, 439, 773, 846
Bse118I RCCGGY 1 cut(s) 676
BseDI CCNNGG 5 cut(s) 33, 45, 149, 406, 906
BseGI GGATG 2 cut(s) 480, 594
BseLI CCNNNNNNNGG 5 cut(s) 153, 154, 439, 773, 846
BseMII CTCAG 3 cut(s) 99, 311, 367
BseRI GAGGAG 3 cut(s) 225, 266, 698
BshFI GGCC 6 cut(s) 32, 436, 501, 568, 699, 850
BshTI ACCGGT 1 cut(s) 676
BsiHKCI CYCGRG 1 cut(s) 907
BsiSI CCGG 3 cut(s) 433, 677, 851
BslFI GGGAC 1 cut(s) 43
BslI CCNNNNNNNGG 5 cut(s) 153, 154, 439, 773, 846
BsmAI GTCTC 4 cut(s) 107, 300, 427, 467
BsmBI CGTCTC 1 cut(s) 467
BsmFI GGGAC 1 cut(s) 43
BsmI GAATGC 2 cut(s) 334, 357
BsnI GGCC 6 cut(s) 32, 436, 501, 568, 699, 850
Bso31I GGTCTC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 907
Bsp143I GATC 2 cut(s) 49, 871
BspACI CCGC 1 cut(s) 742
BspANI GGCC 6 cut(s) 32, 436, 501, 568, 699, 850
BspCNI CTCAG 3 cut(s) 100, 310, 366
BspLI GGNNCC 2 cut(s) 51, 165
BspPI GGATC 3 cut(s) 44, 57, 879
BspTI CTTAAG 2 cut(s) 701, 737
BspTNI GGTCTC 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 676
BssAI RCCGGY 1 cut(s) 676
BssECI CCNNGG 5 cut(s) 33, 45, 149, 406, 906
BssMI GATC 2 cut(s) 49, 871
BssSI CACGAG 1 cut(s) 417
BssT1I CCWWGG 2 cut(s) 45, 149
Bst2BI CACGAG 1 cut(s) 417
Bst6I CTCTTC 2 cut(s) 69, 78
BstAFI CTTAAG 2 cut(s) 701, 737
BstC8I GCNNGC 2 cut(s) 499, 536
BstDEI CTNAG 5 cut(s) 92, 108, 297, 308, 353
BstDSI CCRYGG 2 cut(s) 33, 406
BstF5I GGATG 2 cut(s) 480, 594
BstH2I RGCGCY 1 cut(s) 865
BstHHI GCGC 2 cut(s) 44, 864
BstKTI GATC 2 cut(s) 52, 874
BstMAI GTCTC 4 cut(s) 107, 300, 427, 467
BstMBI GATC 2 cut(s) 49, 871
BstNSI RCATGY 2 cut(s) 176, 538
BstSCI CCNGG 1 cut(s) 850
BstV2I GAAGAC 1 cut(s) 497
BstX2I RGATCY 2 cut(s) 49, 871
BstYI RGATCY 2 cut(s) 49, 871
BsuI GTATCC 1 cut(s) 653
BsuRI GGCC 6 cut(s) 32, 436, 501, 568, 699, 850
BtgI CCRYGG 2 cut(s) 33, 406
BtsCI GGATG 2 cut(s) 480, 594
Cac8I GCNNGC 2 cut(s) 499, 536
CfoI GCGC 2 cut(s) 44, 864
Cfr10I RCCGGY 1 cut(s) 676
CseI GACGC 3 cut(s) 449, 572, 809
CspAI ACCGGT 1 cut(s) 676
CviAII CATG 2 cut(s) 173, 535
DdeI CTNAG 5 cut(s) 92, 108, 297, 308, 353
DpnI GATC 2 cut(s) 51, 873
DpnII GATC 2 cut(s) 49, 871
EaeI YGGCCR 2 cut(s) 30, 848
Eam1104I CTCTTC 2 cut(s) 69, 78
EarI CTCTTC 2 cut(s) 69, 78
Eco130I CCWWGG 2 cut(s) 45, 149
Eco147I AGGCCT 1 cut(s) 699
Eco31I GGTCTC 1 cut(s) 107
Eco88I CYCGRG 1 cut(s) 907
EcoT14I CCWWGG 2 cut(s) 45, 149
ErhI CCWWGG 2 cut(s) 45, 149
Esp3I CGTCTC 1 cut(s) 467
FaeI CATG 2 cut(s) 176, 538
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FaqI GGGAC 1 cut(s) 43
FatI CATG 2 cut(s) 172, 534
FauNDI CATATG 1 cut(s) 829
FokI GGATG 2 cut(s) 487, 601
FspBI CTAG 5 cut(s) 389, 468, 695, 834, 928
GlaI GCGC 2 cut(s) 43, 863
HaeII RGCGCY 1 cut(s) 865
HaeIII GGCC 6 cut(s) 32, 436, 501, 568, 699, 850
HapII CCGG 3 cut(s) 433, 677, 851
HgaI GACGC 3 cut(s) 449, 572, 809
HhaI GCGC 2 cut(s) 44, 864
Hin1II CATG 2 cut(s) 176, 538
Hin6I GCGC 2 cut(s) 42, 862
HinP1I GCGC 2 cut(s) 42, 862
HpaII CCGG 3 cut(s) 433, 677, 851
HphI GGTGA 2 cut(s) 666, 923
Hpy166II GTNNAC 1 cut(s) 674
Hpy188I TCNGA 2 cut(s) 109, 588
Hpy188III TCNNGA 1 cut(s) 881
Hpy8I GTNNAC 1 cut(s) 674
Hpy99I CGWCG 2 cut(s) 588, 825
HpyAV CCTTC 4 cut(s) 177, 324, 743, 777
HpyCH4V TGCA 1 cut(s) 133
HpyF3I CTNAG 5 cut(s) 92, 108, 297, 308, 353
Hsp92II CATG 2 cut(s) 176, 538
HspAI GCGC 2 cut(s) 42, 862
Kzo9I GATC 2 cut(s) 49, 871
LmnI GCTCC 1 cut(s) 169
MaeI CTAG 5 cut(s) 389, 468, 695, 834, 928
MalI GATC 2 cut(s) 51, 873
MboI GATC 2 cut(s) 49, 871
MboII GAAGA 6 cut(s) 56, 95, 135, 497, 753, 779
MfeI CAATTG 1 cut(s) 509
MflI RGATCY 2 cut(s) 49, 871
MluCI AATT 9 cut(s) 265, 279, 450, 509, 607, 651, 721, 876, 918
MmeI TCCRAC 2 cut(s) 452, 566
MroXI GAANNNNTTC 2 cut(s) 87, 334
MseI TTAA 8 cut(s) 264, 282, 515, 528, 650, 702, 720, 738
MspCI CTTAAG 2 cut(s) 701, 737
MspI CCGG 3 cut(s) 433, 677, 851
MspR9I CCNGG 1 cut(s) 852
MunI CAATTG 1 cut(s) 509
Mva1269I GAATGC 2 cut(s) 334, 357
NciI CCSGG 1 cut(s) 852
NdeI CATATG 1 cut(s) 829
NdeII GATC 2 cut(s) 49, 871
NlaIII CATG 2 cut(s) 176, 538
NlaIV GGNNCC 2 cut(s) 51, 165
NspI RCATGY 2 cut(s) 176, 538
PaeI GCATGC 1 cut(s) 538
PceI AGGCCT 1 cut(s) 699
PciI ACATGT 1 cut(s) 172
PcsI WCGNNNNNNNCGW 1 cut(s) 802
PctI GAATGC 2 cut(s) 334, 357
PdmI GAANNNNTTC 2 cut(s) 87, 334
PinAI ACCGGT 1 cut(s) 676
PscI ACATGT 1 cut(s) 172
PspN4I GGNNCC 2 cut(s) 51, 165
PsuI RGATCY 2 cut(s) 49, 871
SaqAI TTAA 8 cut(s) 264, 282, 515, 528, 650, 702, 720, 738
Sau3AI GATC 2 cut(s) 49, 871
ScrFI CCNGG 1 cut(s) 852
SetI ASST 7 cut(s) 10, 90, 394, 615, 756, 796, 896
SgrAI CRCCGGYG 1 cut(s) 676
SmlI CTYRAG 3 cut(s) 701, 737, 889
SmoI CTYRAG 3 cut(s) 701, 737, 889
SphI GCATGC 1 cut(s) 538
Sse9I AATT 9 cut(s) 265, 279, 450, 509, 607, 651, 721, 876, 918
SseBI AGGCCT 1 cut(s) 699
SsiI CCGC 1 cut(s) 742
SspMI CTAG 5 cut(s) 389, 468, 695, 834, 928
StuI AGGCCT 1 cut(s) 699
StyD4I CCNGG 1 cut(s) 850
StyI CCWWGG 2 cut(s) 45, 149
TaqI TCGA 2 cut(s) 208, 790
TasI AATT 9 cut(s) 265, 279, 450, 509, 607, 651, 721, 876, 918
Tru1I TTAA 8 cut(s) 264, 282, 515, 528, 650, 702, 720, 738
Tru9I TTAA 8 cut(s) 264, 282, 515, 528, 650, 702, 720, 738
TspDTI ATGAA 3 cut(s) 576, 759, 816
TspGWI ACGGA 1 cut(s) 395
Vha464I CTTAAG 2 cut(s) 701, 737
XapI RAATTY 2 cut(s) 450, 918
XceI RCATGY 2 cut(s) 176, 538
XmnI GAANNNNTTC 2 cut(s) 87, 334
XspI CTAG 5 cut(s) 389, 468, 695, 834, 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.