FvH4_5g07761

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0018036
Physical Location & Seq
Forward (+)
4545326 .. 4546098
773 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g07761.t1

Sequence Viewer

Length: 708 bp
ATGGCTTCCCCGAATCTCCTTTTTCTTCTGGTTCTCTTCTCCCTCGCTACCTCCGTTTCCTCCACCATAGCTTTGCCCGGAGTGGTTTACCCCACCGCCGCTTCGCCCTCTTCCACCTCCGTTTCCTCTACTGCCGCAGCTTCACCCGCCGTGGTTTCCCCCACCGTTACCATCCTCACCATACTCGGTCTGGCCAAAAGCCTCACCGACTCCCCTCACCTCTCCATGGCCCTCGGCCTCGGCCTCAGCCCACCGACGACCACCATATTTCTTCCGTCGGATACGGCTTTCCAGCACTCCGGACCTCCCTCGATACCTCTTGCGCTTCGGCGCCGCTATAATCTGACGATCACCTCGTCCTTTGTCGGCGACGGTTATACCTCCATCAACGCCGTCTGGGTCAACCCGACACCAGTTTTAGACTACGGGTCGGTTGTGATCTATCGGGTGGCGAAGCCGTTTCCCGTCAATAGATCAGCTTCAACGCATATGGCTCCGGCTTCGGCAAAGCCACCTCAGCAGAAAATCCGACAAGTGGGTGGCGTTCTTCGTGCCATCGATTGCTTAATCATGGCCGCTTTCGTAGAGTTGCAAGTTACGGAGTTCAGTGGGTCCACGCTCTTTGCTGAGGAGGACGAAGCAGTGGAGGAGTATGCAAATCTCAACTCCGACTACGCTCAGTTCTTCAAGGCGCGAGTTGTTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

236

Amino Acids

24.75

Weight (kDa)

6.27

Isoelectric Point (pI)

54.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018036)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g07761 FvH4_5g07762 FvH4_5g07800
pyrus_communis pycom461g00020 pycom461g00340
rosa_laevigata RLG00000000445 RLG00000000453 RLG00000006086
rosa_rugosa RorugMtG0000100.1
rosa_samantha Rh4AG240000 Rh4BG243200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 330
AccII CGCG 1 cut(s) 694
AccIII TCCGGA 1 cut(s) 299
AciI CCGC 6 cut(s) 96, 99, 135, 147, 334, 576
AcoI YGGCCR 2 cut(s) 192, 573
AcyI GRCGYC 1 cut(s) 331
AfiI CCNNNNNNNGG 2 cut(s) 226, 535
AgsI TTSAA 2 cut(s) 483, 688
AhdI GACNNNNNGTC 1 cut(s) 427
AluBI AGCT 3 cut(s) 71, 140, 479
AluI AGCT 3 cut(s) 71, 140, 479
Aor13HI TCCGGA 1 cut(s) 299
AoxI GGCC 5 cut(s) 192, 228, 235, 241, 573
ApeKI GCWGC 1 cut(s) 137
AspLEI GCGC 3 cut(s) 325, 333, 694
AspS9I GGNCC 3 cut(s) 229, 302, 612
AsuC2I CCSGG 1 cut(s) 78
AsuHPI GGTGA 5 cut(s) 135, 169, 196, 209, 343
AvaII GGWCC 2 cut(s) 302, 612
BalI TGGCCA 1 cut(s) 194
BanI GGYRCC 1 cut(s) 330
BbvCI CCTCAGC 3 cut(s) 245, 516, 627
BbvI GCAGC 1 cut(s) 149
BccI CCATC 3 cut(s) 179, 392, 563
BceAI ACGGC 4 cut(s) 134, 300, 377, 442
BciVI GTATCC 1 cut(s) 274
BcnI CCSGG 1 cut(s) 78
BfoI RGCGCY 1 cut(s) 334
BfuI GTATCC 1 cut(s) 274
BisI GCNGC 5 cut(s) 99, 135, 138, 334, 576
BlsI GCNGC 5 cut(s) 100, 136, 139, 335, 577
Bme1390I CCNGG 1 cut(s) 78
Bme18I GGWCC 2 cut(s) 302, 612
BmeRI GACNNNNNGTC 1 cut(s) 427
BmgT120I GGNCC 3 cut(s) 229, 302, 612
BmiI GGNNCC 3 cut(s) 332, 495, 613
BmrFI CCNGG 1 cut(s) 78
Bpu10I CCTNAGC 3 cut(s) 245, 516, 627
BpuMI CCSGG 1 cut(s) 78
Bsa29I ATCGAT 1 cut(s) 558
BsaHI GRCGYC 1 cut(s) 331
BsaJI CCNNGG 4 cut(s) 150, 225, 232, 238
BsaWI WCCGGW 1 cut(s) 299
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 535
Bse1I ACTGG 1 cut(s) 413
BseAI TCCGGA 1 cut(s) 299
BseCI ATCGAT 1 cut(s) 558
BseDI CCNNGG 4 cut(s) 150, 225, 232, 238
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 226, 535
BseMII CTCAG 4 cut(s) 259, 530, 618, 692
BseNI ACTGG 1 cut(s) 413
BseRI GAGGAG 2 cut(s) 644, 662
BseXI GCAGC 1 cut(s) 149
Bsh1236I CGCG 1 cut(s) 694
BshFI GGCC 5 cut(s) 194, 230, 237, 243, 575
BshNI GGYRCC 1 cut(s) 330
BshVI ATCGAT 1 cut(s) 558
BsiSI CCGG 3 cut(s) 78, 300, 497
BslI CCNNNNNNNGG 2 cut(s) 226, 535
BsnI GGCC 5 cut(s) 194, 230, 237, 243, 575
Bsp13I TCCGGA 1 cut(s) 299
Bsp143I GATC 3 cut(s) 348, 438, 473
Bsp19I CCATGG 1 cut(s) 225
BspACI CCGC 6 cut(s) 96, 99, 135, 147, 334, 576
BspANI GGCC 5 cut(s) 194, 230, 237, 243, 575
BspCNI CTCAG 4 cut(s) 258, 529, 619, 691
BspDI ATCGAT 1 cut(s) 558
BspEI TCCGGA 1 cut(s) 299
BspFNI CGCG 1 cut(s) 694
BspLI GGNNCC 3 cut(s) 332, 495, 613
BspT107I GGYRCC 1 cut(s) 330
BsrI ACTGG 1 cut(s) 413
BssECI CCNNGG 4 cut(s) 150, 225, 232, 238
BssMI GATC 3 cut(s) 348, 438, 473
BssNI GRCGYC 1 cut(s) 331
BssT1I CCWWGG 1 cut(s) 225
Bst4CI ACNGT 2 cut(s) 166, 374
Bst6I CTCTTC 2 cut(s) 41, 115
BstACI GRCGYC 1 cut(s) 331
BstDEI CTNAG 4 cut(s) 245, 516, 627, 678
BstDSI CCRYGG 2 cut(s) 150, 225
BstF5I GGATG 1 cut(s) 171
BstFNI CGCG 1 cut(s) 694
BstH2I RGCGCY 1 cut(s) 334
BstHHI GCGC 3 cut(s) 325, 333, 694
BstKTI GATC 3 cut(s) 351, 441, 476
BstMBI GATC 3 cut(s) 348, 438, 473
BstMWI GCNNNNNNNGC 2 cut(s) 146, 517
BstSCI CCNGG 1 cut(s) 76
BstUI CGCG 1 cut(s) 694
BstV1I GCAGC 1 cut(s) 149
Bsu15I ATCGAT 1 cut(s) 558
BsuI GTATCC 1 cut(s) 274
BsuRI GGCC 5 cut(s) 194, 230, 237, 243, 575
BsuTUI ATCGAT 1 cut(s) 558
BtgI CCRYGG 2 cut(s) 150, 225
BtsCI GGATG 1 cut(s) 171
BtsI GCAGTG 1 cut(s) 648
BtsIMutI CAGTG 2 cut(s) 613, 648
CfoI GCGC 3 cut(s) 325, 333, 694
Cfr13I GGNCC 3 cut(s) 229, 302, 612
ClaI ATCGAT 1 cut(s) 558
CspCI CAANNNNNGTGG 2 cut(s) 604, 639
CviAII CATG 2 cut(s) 226, 571
DdeI CTNAG 4 cut(s) 245, 516, 627, 678
DinI GGCGCC 1 cut(s) 332
DpnI GATC 3 cut(s) 350, 440, 475
DpnII GATC 3 cut(s) 348, 438, 473
DriI GACNNNNNGTC 1 cut(s) 427
EaeI YGGCCR 2 cut(s) 192, 573
Eam1104I CTCTTC 2 cut(s) 41, 115
Eam1105I GACNNNNNGTC 1 cut(s) 427
EarI CTCTTC 2 cut(s) 41, 115
Eco130I CCWWGG 1 cut(s) 225
Eco47I GGWCC 2 cut(s) 302, 612
EcoT14I CCWWGG 1 cut(s) 225
EgeI GGCGCC 1 cut(s) 332
EheI GGCGCC 1 cut(s) 332
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 2 cut(s) 229, 574
FatI CATG 2 cut(s) 225, 570
FauI CCCGC 1 cut(s) 154
FauNDI CATATG 1 cut(s) 489
Fnu4HI GCNGC 5 cut(s) 99, 135, 138, 334, 576
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 5 cut(s) 99, 135, 138, 334, 576
GlaI GCGC 3 cut(s) 324, 332, 693
GluI GCNGC 5 cut(s) 99, 135, 138, 334, 576
HaeII RGCGCY 1 cut(s) 334
HaeIII GGCC 5 cut(s) 194, 230, 237, 243, 575
HapII CCGG 3 cut(s) 78, 300, 497
HhaI GCGC 3 cut(s) 325, 333, 694
Hin1I GRCGYC 1 cut(s) 331
Hin1II CATG 2 cut(s) 229, 574
Hin6I GCGC 3 cut(s) 323, 331, 692
HinP1I GCGC 3 cut(s) 323, 331, 692
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 2 cut(s) 13, 209
HpaII CCGG 3 cut(s) 78, 300, 497
HphI GGTGA 5 cut(s) 135, 169, 196, 209, 343
Hpy166II GTNNAC 3 cut(s) 88, 403, 615
Hpy188I TCNGA 4 cut(s) 280, 345, 530, 670
Hpy188III TCNNGA 1 cut(s) 300
Hpy8I GTNNAC 3 cut(s) 88, 403, 615
Hpy99I CGWCG 3 cut(s) 259, 280, 374
HpyCH4III ACNGT 2 cut(s) 166, 374
HpyCH4V TGCA 2 cut(s) 592, 656
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 517
HpyF3I CTNAG 4 cut(s) 245, 516, 627, 678
Hsp92I GRCGYC 1 cut(s) 331
Hsp92II CATG 2 cut(s) 229, 574
HspAI GCGC 3 cut(s) 323, 331, 692
KasI GGCGCC 1 cut(s) 330
Kpn2I TCCGGA 1 cut(s) 299
Kzo9I GATC 3 cut(s) 348, 438, 473
LmnI GCTCC 1 cut(s) 499
LpnPI CCDG 8 cut(s) 14, 91, 176, 305, 313, 382, 426, 510
Lsp1109I GCAGC 1 cut(s) 149
MaeIII GTNAC 2 cut(s) 166, 595
MalI GATC 3 cut(s) 350, 440, 475
MboI GATC 3 cut(s) 348, 438, 473
MboII GAAGA 6 cut(s) 17, 28, 102, 263, 539, 676
MlsI TGGCCA 1 cut(s) 194
MluNI TGGCCA 1 cut(s) 194
Mly113I GGCGCC 1 cut(s) 331
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 3 cut(s) 258, 553, 693
Mox20I TGGCCA 1 cut(s) 194
MroI TCCGGA 1 cut(s) 299
MscI TGGCCA 1 cut(s) 194
MseI TTAA 1 cut(s) 566
Msp20I TGGCCA 1 cut(s) 194
MspI CCGG 3 cut(s) 78, 300, 497
MspR9I CCNGG 1 cut(s) 78
MvnI CGCG 1 cut(s) 694
MwoI GCNNNNNNNGC 2 cut(s) 146, 517
NarI GGCGCC 1 cut(s) 331
NciI CCSGG 1 cut(s) 78
NcoI CCATGG 1 cut(s) 225
NdeI CATATG 1 cut(s) 489
NdeII GATC 3 cut(s) 348, 438, 473
NlaIII CATG 2 cut(s) 229, 574
NlaIV GGNNCC 3 cut(s) 332, 495, 613
NmeAIII GCCGAG 2 cut(s) 213, 219
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 353
PfeI GAWTC 1 cut(s) 13
PkrI GCNGC 5 cut(s) 100, 136, 139, 335, 577
PleI GAGTC 1 cut(s) 203
PluTI GGCGCC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 203
PspN4I GGNNCC 3 cut(s) 332, 495, 613
PspPI GGNCC 3 cut(s) 229, 302, 612
SaqAI TTAA 1 cut(s) 566
SatI GCNGC 5 cut(s) 99, 135, 138, 334, 576
Sau3AI GATC 3 cut(s) 348, 438, 473
Sau96I GGNCC 3 cut(s) 229, 302, 612
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 78
SfoI GGCGCC 1 cut(s) 332
SinI GGWCC 2 cut(s) 302, 612
SsiI CCGC 6 cut(s) 96, 99, 135, 147, 334, 576
SspDI GGCGCC 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 76
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 2 cut(s) 166, 374
TaqI TCGA 2 cut(s) 311, 558
TaqII GACCGA 1 cut(s) 176
TauI GCSGC 4 cut(s) 101, 137, 336, 578
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 1 cut(s) 566
Tru9I TTAA 1 cut(s) 566
TscAI CASTG 2 cut(s) 613, 648
TseI GCWGC 1 cut(s) 137
TspGWI ACGGA 4 cut(s) 43, 109, 264, 614
TspRI CASTG 2 cut(s) 613, 648
VpaK11BI GGWCC 2 cut(s) 302, 612
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.