Rh4AG240000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0018036
Physical Location & Seq
Forward (+)
54531833 .. 54532279
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG240000.1

Sequence Viewer

Length: 417 bp
ATGAGGGAGCTAATCTGCTTGCTTGTGCAGGCGAGGACCGCTCGGCTAGGGCGCGCCAGAGGAGCTTCGAGGGAGGGCTGTCGAAGAGCAAAGAATCAAGTCACTCGAAGCTCTGCCCTTTGCCCCGTGCTGTCTCCCTCCGGTTGCCCCAGGCCGAAAAACGTTGCAGTCAATTGCCCTTCCCGTTCTCATAAAAAAATAGACTACCATACGCGCCCTTTGCCGGCATTTCTATCCGCCCGCGCGTCTCATGACTGTAATGGTTGGGGTTGGCTCTGCTCGCCGGTTGTGCTGCGTGAGCTTCCGGATGCCTCCAAGCAAGCGAAGGTTTTCGGGGTGAACGCCGCGCGTCCTTCCCATGCTCCGTGGCAACGGCGGTGCCCCGAAACAAAGGGGCCACCCAGTCGCGGTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.19

Weight (kDa)

11.19

Isoelectric Point (pI)

62.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018036)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g07761 FvH4_5g07762 FvH4_5g07800
pyrus_communis pycom461g00020 pycom461g00340
rosa_laevigata RLG00000000445 RLG00000000453 RLG00000006086
rosa_rugosa RorugMtG0000100.1
rosa_samantha Rh4AG240000 Rh4BG243200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 378
AccBSI CCGCTC 1 cut(s) 41
AccII CGCG 7 cut(s) 54, 214, 243, 245, 347, 349, 408
AccIII TCCGGA 1 cut(s) 304
AciI CCGC 6 cut(s) 39, 237, 241, 345, 376, 408
AclI AACGTT 1 cut(s) 162
AfiI CCNNNNNNNGG 2 cut(s) 223, 407
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 4 cut(s) 10, 65, 111, 301
AluI AGCT 4 cut(s) 10, 65, 111, 301
Alw26I GTCTC 2 cut(s) 138, 252
Aor13HI TCCGGA 1 cut(s) 304
AoxI GGCC 2 cut(s) 152, 395
ApeKI GCWGC 1 cut(s) 292
AscI GGCGCGCC 1 cut(s) 52
Asp700I GAANNNNTTC 1 cut(s) 329
AspLEI GCGC 5 cut(s) 54, 56, 216, 245, 349
AspS9I GGNCC 2 cut(s) 36, 395
AsuHPI GGTGA 1 cut(s) 349
AvaII GGWCC 1 cut(s) 36
BaeGI GKGCMC 1 cut(s) 383
BanI GGYRCC 1 cut(s) 378
BbvI GCAGC 1 cut(s) 279
BceAI ACGGC 1 cut(s) 389
BciT130I CCWGG 1 cut(s) 151
BcoDI GTCTC 2 cut(s) 138, 252
BfaI CTAG 2 cut(s) 47, 415
BisI GCNGC 2 cut(s) 293, 345
BlsI GCNGC 2 cut(s) 294, 346
Bme1390I CCNGG 1 cut(s) 151
Bme18I GGWCC 1 cut(s) 36
BmgT120I GGNCC 2 cut(s) 36, 395
BmiI GGNNCC 2 cut(s) 380, 396
BmrFI CCNGG 1 cut(s) 151
BmrI ACTGGG 1 cut(s) 396
BmsI GCATC 1 cut(s) 298
BmuI ACTGGG 1 cut(s) 396
BplI GAGNNNNNCTC 2 cut(s) 25, 57
BsaJI CCNNGG 2 cut(s) 149, 365
BsaWI WCCGGW 2 cut(s) 140, 304
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 407
Bse118I RCCGGY 2 cut(s) 223, 283
Bse1I ACTGG 1 cut(s) 402
BseAI TCCGGA 1 cut(s) 304
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 2 cut(s) 149, 365
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 2 cut(s) 223, 407
BseNI ACTGG 1 cut(s) 402
BsePI GCGCGC 1 cut(s) 52
BseRI GAGGAG 1 cut(s) 75
BseSI GKGCMC 1 cut(s) 383
BseXI GCAGC 1 cut(s) 279
BsgI GTGCAG 1 cut(s) 47
Bsh1236I CGCG 7 cut(s) 54, 214, 243, 245, 347, 349, 408
Bsh1285I CGRYCG 1 cut(s) 412
BshFI GGCC 2 cut(s) 154, 397
BshNI GGYRCC 1 cut(s) 378
BsiEI CGRYCG 1 cut(s) 412
BsiSI CCGG 4 cut(s) 141, 224, 284, 305
BslI CCNNNNNNNGG 2 cut(s) 223, 407
BsmAI GTCTC 2 cut(s) 138, 252
BsmBI CGTCTC 1 cut(s) 252
BsnI GGCC 2 cut(s) 154, 397
Bsp1286I GDGCHC 1 cut(s) 383
Bsp13I TCCGGA 1 cut(s) 304
BspACI CCGC 6 cut(s) 39, 237, 241, 345, 376, 408
BspANI GGCC 2 cut(s) 154, 397
BspEI TCCGGA 1 cut(s) 304
BspFNI CGCG 7 cut(s) 54, 214, 243, 245, 347, 349, 408
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 2 cut(s) 380, 396
BspQI GCTCTTC 1 cut(s) 79
BspT107I GGYRCC 1 cut(s) 378
BsrBI CCGCTC 1 cut(s) 41
BsrFI RCCGGY 2 cut(s) 223, 283
BsrI ACTGG 1 cut(s) 402
BssAI RCCGGY 2 cut(s) 223, 283
BssECI CCNNGG 2 cut(s) 149, 365
BssHII GCGCGC 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 257
Bst6I CTCTTC 1 cut(s) 79
BstC8I GCNNGC 7 cut(s) 20, 30, 54, 225, 241, 281, 321
BstDSI CCRYGG 1 cut(s) 365
BstF5I GGATG 1 cut(s) 313
BstFNI CGCG 7 cut(s) 54, 214, 243, 245, 347, 349, 408
BstHHI GCGC 5 cut(s) 54, 56, 216, 245, 349
BstMAI GTCTC 2 cut(s) 138, 252
BstMCI CGRYCG 1 cut(s) 412
BstMWI GCNNNNNNNGC 6 cut(s) 38, 62, 220, 280, 289, 298
BstNI CCWGG 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 149
BstSLI GKGCMC 1 cut(s) 383
BstUI CGCG 7 cut(s) 54, 214, 243, 245, 347, 349, 408
BstV1I GCAGC 1 cut(s) 279
BsuRI GGCC 2 cut(s) 154, 397
BtgI CCRYGG 1 cut(s) 365
BtsCI GGATG 1 cut(s) 313
Cac8I GCNNGC 7 cut(s) 20, 30, 54, 225, 241, 281, 321
CciI TCATGA 1 cut(s) 250
CfoI GCGC 5 cut(s) 54, 56, 216, 245, 349
Cfr10I RCCGGY 2 cut(s) 223, 283
Cfr13I GGNCC 2 cut(s) 36, 395
CseI GACGC 2 cut(s) 234, 338
CviAII CATG 2 cut(s) 251, 359
CviJI RGCY 9 cut(s) 10, 46, 65, 78, 111, 154, 274, 301, 397
CviKI_1 RGCY 9 cut(s) 10, 46, 65, 78, 111, 154, 274, 301, 397
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
EciI GGCGGA 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 149
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 2 cut(s) 254, 362
FaiI YATR 4 cut(s) 192, 210, 252, 360
FatI CATG 2 cut(s) 250, 358
FauI CCCGC 1 cut(s) 248
Fnu4HI GCNGC 2 cut(s) 293, 345
FokI GGATG 1 cut(s) 320
Fsp4HI GCNGC 2 cut(s) 293, 345
FspBI CTAG 2 cut(s) 47, 415
GlaI GCGC 5 cut(s) 53, 55, 215, 244, 348
GluI GCNGC 2 cut(s) 293, 345
HaeIII GGCC 2 cut(s) 154, 397
HapII CCGG 4 cut(s) 141, 224, 284, 305
HgaI GACGC 2 cut(s) 234, 338
HhaI GCGC 5 cut(s) 54, 56, 216, 245, 349
Hin1II CATG 2 cut(s) 254, 362
Hin6I GCGC 5 cut(s) 52, 54, 214, 243, 347
HinP1I GCGC 5 cut(s) 52, 54, 214, 243, 347
HinfI GANTC 1 cut(s) 94
HpaII CCGG 4 cut(s) 141, 224, 284, 305
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 1 cut(s) 340
Hpy188III TCNNGA 2 cut(s) 251, 305
Hpy8I GTNNAC 1 cut(s) 340
HpyAV CCTTC 3 cut(s) 189, 319, 363
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 2 cut(s) 28, 167
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 62, 220, 280, 289, 298
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 2 cut(s) 254, 362
HspAI GCGC 5 cut(s) 52, 54, 214, 243, 347
Kpn2I TCCGGA 1 cut(s) 304
KroI GCCGGC 1 cut(s) 223
KroNI GCCGGC 1 cut(s) 225
LguI GCTCTTC 1 cut(s) 79
LmnI GCTCC 3 cut(s) 7, 62, 367
LpnPI CCDG 8 cut(s) 14, 70, 136, 154, 163, 237, 297, 318
Lsp1109I GCAGC 1 cut(s) 279
LweI GCATC 1 cut(s) 298
MaeI CTAG 2 cut(s) 47, 415
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 100
MbiI CCGCTC 1 cut(s) 41
MboII GAAGA 1 cut(s) 96
MfeI CAATTG 1 cut(s) 172
MhlI GDGCHC 1 cut(s) 383
MluCI AATT 1 cut(s) 172
MnlI CCTC 6 cut(s) 27, 53, 63, 67, 148, 322
MroI TCCGGA 1 cut(s) 304
MroNI GCCGGC 1 cut(s) 223
MroXI GAANNNNTTC 1 cut(s) 329
MspI CCGG 4 cut(s) 141, 224, 284, 305
MspR9I CCNGG 1 cut(s) 151
MunI CAATTG 1 cut(s) 172
MvaI CCWGG 1 cut(s) 151
MvnI CGCG 7 cut(s) 54, 214, 243, 245, 347, 349, 408
MwoI GCNNNNNNNGC 6 cut(s) 38, 62, 220, 280, 289, 298
NaeI GCCGGC 1 cut(s) 225
NgoMIV GCCGGC 1 cut(s) 223
NlaIII CATG 2 cut(s) 254, 362
NlaIV GGNNCC 2 cut(s) 380, 396
NmeAIII GCCGAG 1 cut(s) 22
NmuCI GTSAC 1 cut(s) 100
PagI TCATGA 1 cut(s) 250
PalAI GGCGCGCC 1 cut(s) 52
PauI GCGCGC 1 cut(s) 52
PciSI GCTCTTC 1 cut(s) 79
PdiI GCCGGC 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 329
PfeI GAWTC 1 cut(s) 94
PkrI GCNGC 2 cut(s) 294, 346
Psp1406I AACGTT 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 149
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 2 cut(s) 380, 396
PspPI GGNCC 2 cut(s) 36, 395
PteI GCGCGC 1 cut(s) 52
SapI GCTCTTC 1 cut(s) 79
SatI GCNGC 2 cut(s) 293, 345
Sau96I GGNCC 2 cut(s) 36, 395
ScrFI CCNGG 1 cut(s) 151
SduI GDGCHC 1 cut(s) 383
SetI ASST 6 cut(s) 12, 67, 113, 165, 303, 330
SfaNI GCATC 1 cut(s) 298
SgsI GGCGCGCC 1 cut(s) 52
SinI GGWCC 1 cut(s) 36
Sse9I AATT 1 cut(s) 172
SsiI CCGC 6 cut(s) 39, 237, 241, 345, 376, 408
SspMI CTAG 2 cut(s) 47, 415
StyD4I CCNGG 1 cut(s) 149
TaaI ACNGT 1 cut(s) 257
TaiI ACGT 1 cut(s) 165
TaqI TCGA 3 cut(s) 68, 82, 106
TasI AATT 1 cut(s) 172
TauI GCSGC 1 cut(s) 347
TfiI GAWTC 1 cut(s) 94
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 100
TspGWI ACGGA 1 cut(s) 354
VpaK11BI GGWCC 1 cut(s) 36
XmnI GAANNNNTTC 1 cut(s) 329
XspI CTAG 2 cut(s) 47, 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.