No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g07761 FvH4_5g07762 FvH4_5g07800 |
| pyrus_communis | pycom461g00020 pycom461g00340 |
| rosa_laevigata | RLG00000000445 RLG00000000453 RLG00000006086 |
| rosa_rugosa | RorugMtG0000100.1 |
| rosa_samantha | Rh4AG240000 Rh4BG243200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 899 |
| Acc65I | GGTACC | 1 cut(s) | 424 |
| AccB1I | GGYRCC | 1 cut(s) | 424 |
| AccBSI | CCGCTC | 1 cut(s) | 686 |
| AclI | AACGTT | 1 cut(s) | 807 |
| AclWI | GGATC | 1 cut(s) | 487 |
| AcoI | YGGCCR | 2 cut(s) | 37, 115 |
| AcuI | CTGAAG | 1 cut(s) | 1035 |
| AcyI | GRCGYC | 2 cut(s) | 1256, 1281 |
| AfaI | GTAC | 2 cut(s) | 162, 426 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 113, 196, 579, 586, 628, 629 |
| AflIII | ACRYGT | 1 cut(s) | 1273 |
| AgeI | ACCGGT | 1 cut(s) | 579 |
| AgsI | TTSAA | 3 cut(s) | 1067, 1094, 1127 |
| AjnI | CCWGG | 3 cut(s) | 547, 647, 794 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1104, 1136 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 87, 119 |
| AluBI | AGCT | 7 cut(s) | 11, 256, 496, 710, 756, 1090, 1115 |
| AluI | AGCT | 7 cut(s) | 11, 256, 496, 710, 756, 1090, 1115 |
| Alw26I | GTCTC | 2 cut(s) | 783, 1288 |
| AlwI | GGATC | 1 cut(s) | 487 |
| Ama87I | CYCGRG | 3 cut(s) | 627, 1077, 1168 |
| ApaI | GGGCCC | 1 cut(s) | 1351 |
| ApeKI | GCWGC | 5 cut(s) | 289, 674, 1043, 1046, 1162 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 82, 114 |
| AscI | GGCGCGCC | 1 cut(s) | 697 |
| AsiGI | ACCGGT | 1 cut(s) | 579 |
| Asp718I | GGTACC | 1 cut(s) | 424 |
| AspLEI | GCGC | 6 cut(s) | 321, 654, 699, 701, 861, 1181 |
| AspS9I | GGNCC | 9 cut(s) | 43, 125, 269, 551, 602, 681, 1073, 1347, 1348 |
| AsuHPI | GGTGA | 3 cut(s) | 133, 188, 947 |
| AsuII | TTCGAA | 1 cut(s) | 443 |
| AvaI | CYCGRG | 3 cut(s) | 627, 1077, 1168 |
| AvaII | GGWCC | 4 cut(s) | 269, 602, 681, 1073 |
| BaeGI | GKGCMC | 2 cut(s) | 1195, 1351 |
| BanI | GGYRCC | 1 cut(s) | 424 |
| BanII | GRGCYC | 3 cut(s) | 339, 623, 1351 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 174, 206 |
| BbvI | GCAGC | 5 cut(s) | 276, 686, 1030, 1033, 1174 |
| BccI | CCATC | 3 cut(s) | 546, 1064, 1382 |
| BceAI | ACGGC | 2 cut(s) | 369, 980 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1276, 1310 |
| BciT130I | CCWGG | 3 cut(s) | 549, 649, 796 |
| BcoDI | GTCTC | 2 cut(s) | 783, 1288 |
| BfaI | CTAG | 3 cut(s) | 65, 692, 1188 |
| BfmI | CTRYAG | 2 cut(s) | 504, 523 |
| BfoI | RGCGCY | 1 cut(s) | 655 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 123 |
| BisI | GCNGC | 9 cut(s) | 37, 290, 322, 516, 675, 869, 1044, 1047, 1163 |
| BlsI | GCNGC | 9 cut(s) | 38, 291, 323, 517, 676, 870, 1045, 1048, 1164 |
| Bme18I | GGWCC | 4 cut(s) | 269, 602, 681, 1073 |
| BmeT110I | CYCGRG | 3 cut(s) | 627, 1077, 1168 |
| BmgT120I | GGNCC | 9 cut(s) | 43, 125, 269, 551, 602, 681, 1073, 1347, 1348 |
| BmiI | GGNNCC | 8 cut(s) | 44, 210, 426, 604, 645, 938, 1137, 1349 |
| BmsI | GCATC | 1 cut(s) | 421 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 670, 702 |
| BpmI | CTGGAG | 1 cut(s) | 441 |
| Bpu14I | TTCGAA | 1 cut(s) | 443 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1104 |
| BsaHI | GRCGYC | 2 cut(s) | 1256, 1281 |
| BsaJI | CCNNGG | 8 cut(s) | 40, 605, 627, 628, 647, 794, 1076, 1168 |
| BsaWI | WCCGGW | 3 cut(s) | 579, 785, 1132 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 1366 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 113, 196, 579, 586, 628, 629 |
| Bse118I | RCCGGY | 4 cut(s) | 45, 113, 427, 579 |
| Bse3DI | GCAATG | 2 cut(s) | 885, 1269 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1104 |
| BseBI | CCWGG | 3 cut(s) | 549, 649, 796 |
| BseDI | CCNNGG | 8 cut(s) | 40, 605, 627, 628, 647, 794, 1076, 1168 |
| BseGI | GGATG | 2 cut(s) | 1325, 1393 |
| BseJI | GATNNNNATC | 1 cut(s) | 1104 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 113, 196, 579, 586, 628, 629 |
| BseMI | GCAATG | 2 cut(s) | 885, 1269 |
| BseMII | CTCAG | 1 cut(s) | 1312 |
| BsePI | GCGCGC | 1 cut(s) | 697 |
| BseRI | GAGGAG | 1 cut(s) | 720 |
| BseSI | GKGCMC | 2 cut(s) | 1195, 1351 |
| BseX3I | CGGCCG | 1 cut(s) | 37 |
| BseXI | GCAGC | 5 cut(s) | 276, 686, 1030, 1033, 1174 |
| BseYI | CCCAGC | 1 cut(s) | 622 |
| BsgI | GTGCAG | 1 cut(s) | 864 |
| Bsh1285I | CGRYCG | 3 cut(s) | 40, 477, 584 |
| BshNI | GGYRCC | 1 cut(s) | 424 |
| BshTI | ACCGGT | 1 cut(s) | 579 |
| BsiEI | CGRYCG | 3 cut(s) | 40, 477, 584 |
| BsiHKCI | CYCGRG | 3 cut(s) | 627, 1077, 1168 |
| BslFI | GGGAC | 1 cut(s) | 675 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 113, 196, 579, 586, 628, 629 |
| BsmAI | GTCTC | 2 cut(s) | 783, 1288 |
| BsmBI | CGTCTC | 1 cut(s) | 1288 |
| BsmFI | GGGAC | 1 cut(s) | 675 |
| BsmI | GAATGC | 3 cut(s) | 641, 922, 1251 |
| BsoBI | CYCGRG | 3 cut(s) | 627, 1077, 1168 |
| Bsp119I | TTCGAA | 1 cut(s) | 443 |
| Bsp120I | GGGCCC | 1 cut(s) | 1347 |
| Bsp1286I | GDGCHC | 4 cut(s) | 339, 623, 1195, 1351 |
| Bsp143I | GATC | 5 cut(s) | 474, 479, 592, 597, 1290 |
| Bsp68I | TCGCGA | 1 cut(s) | 252 |
| BspCNI | CTCAG | 1 cut(s) | 1311 |
| BspLI | GGNNCC | 8 cut(s) | 44, 210, 426, 604, 645, 938, 1137, 1349 |
| BspMAI | CTGCAG | 1 cut(s) | 527 |
| BspPI | GGATC | 1 cut(s) | 487 |
| BspQI | GCTCTTC | 1 cut(s) | 724 |
| BspT104I | TTCGAA | 1 cut(s) | 443 |
| BspT107I | GGYRCC | 1 cut(s) | 424 |
| BsrBI | CCGCTC | 1 cut(s) | 686 |
| BsrDI | GCAATG | 2 cut(s) | 885, 1269 |
| BsrFI | RCCGGY | 4 cut(s) | 45, 113, 427, 579 |
| BssAI | RCCGGY | 4 cut(s) | 45, 113, 427, 579 |
| BssECI | CCNNGG | 8 cut(s) | 40, 605, 627, 628, 647, 794, 1076, 1168 |
| BssHII | GCGCGC | 1 cut(s) | 697 |
| BssMI | GATC | 5 cut(s) | 474, 479, 592, 597, 1290 |
| BssNI | GRCGYC | 2 cut(s) | 1256, 1281 |
| Bst2UI | CCWGG | 3 cut(s) | 549, 649, 796 |
| Bst4CI | ACNGT | 5 cut(s) | 29, 145, 176, 372, 999 |
| Bst6I | CTCTTC | 1 cut(s) | 724 |
| BstACI | GRCGYC | 2 cut(s) | 1256, 1281 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 887 |
| BstBI | TTCGAA | 1 cut(s) | 443 |
| BstC8I | GCNNGC | 5 cut(s) | 47, 254, 433, 699, 883 |
| BstDEI | CTNAG | 3 cut(s) | 243, 872, 1298 |
| BstEII | GGTNACC | 3 cut(s) | 109, 130, 185 |
| BstF5I | GGATG | 2 cut(s) | 1325, 1393 |
| BstH2I | RGCGCY | 1 cut(s) | 655 |
| BstHHI | GCGC | 6 cut(s) | 321, 654, 699, 701, 861, 1181 |
| BstKTI | GATC | 5 cut(s) | 477, 482, 595, 600, 1293 |
| BstMAI | GTCTC | 2 cut(s) | 783, 1288 |
| BstMBI | GATC | 5 cut(s) | 474, 479, 592, 597, 1290 |
| BstMCI | CGRYCG | 3 cut(s) | 40, 477, 584 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 42, 123, 683, 707, 865, 887 |
| BstNI | CCWGG | 3 cut(s) | 549, 649, 796 |
| BstNSI | RCATGY | 2 cut(s) | 435, 1057 |
| BstPI | GGTNACC | 3 cut(s) | 109, 130, 185 |
| BstSFI | CTRYAG | 2 cut(s) | 504, 523 |
| BstSLI | GKGCMC | 2 cut(s) | 1195, 1351 |
| BstV1I | GCAGC | 5 cut(s) | 276, 686, 1030, 1033, 1174 |
| BstX2I | RGATCY | 1 cut(s) | 479 |
| BstYI | RGATCY | 1 cut(s) | 479 |
| BstZI | CGGCCG | 1 cut(s) | 37 |
| BtsCI | GGATG | 2 cut(s) | 1325, 1393 |
| BtsIMutI | CAGTG | 1 cut(s) | 1011 |
| BtuMI | TCGCGA | 1 cut(s) | 252 |
| Cac8I | GCNNGC | 5 cut(s) | 47, 254, 433, 699, 883 |
| CfoI | GCGC | 6 cut(s) | 321, 654, 699, 701, 861, 1181 |
| Cfr10I | RCCGGY | 4 cut(s) | 45, 113, 427, 579 |
| Cfr13I | GGNCC | 9 cut(s) | 43, 125, 269, 551, 602, 681, 1073, 1347, 1348 |
| Cfr9I | CCCGGG | 2 cut(s) | 627, 1168 |
| CseI | GACGC | 4 cut(s) | 212, 300, 1245, 1270 |
| Csp6I | GTAC | 2 cut(s) | 161, 425 |
| CspAI | ACCGGT | 1 cut(s) | 579 |
| CviAII | CATG | 6 cut(s) | 20, 432, 640, 658, 904, 1054 |
| CviQI | GTAC | 2 cut(s) | 161, 425 |
| DdeI | CTNAG | 3 cut(s) | 243, 872, 1298 |
| DpnI | GATC | 5 cut(s) | 476, 481, 594, 599, 1292 |
| DpnII | GATC | 5 cut(s) | 474, 479, 592, 597, 1290 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 899 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 899 |
| EaeI | YGGCCR | 2 cut(s) | 37, 115 |
| EagI | CGGCCG | 1 cut(s) | 37 |
| Eam1104I | CTCTTC | 1 cut(s) | 724 |
| EarI | CTCTTC | 1 cut(s) | 724 |
| EclXI | CGGCCG | 1 cut(s) | 37 |
| Eco24I | GRGCYC | 3 cut(s) | 339, 623, 1351 |
| Eco47I | GGWCC | 4 cut(s) | 269, 602, 681, 1073 |
| Eco52I | CGGCCG | 1 cut(s) | 37 |
| Eco57I | CTGAAG | 1 cut(s) | 1035 |
| Eco88I | CYCGRG | 3 cut(s) | 627, 1077, 1168 |
| Eco91I | GGTNACC | 3 cut(s) | 109, 130, 185 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1347 |
| EcoO65I | GGTNACC | 3 cut(s) | 109, 130, 185 |
| EcoRII | CCWGG | 3 cut(s) | 547, 647, 794 |
| EcoT22I | ATGCAT | 1 cut(s) | 641 |
| EcoT38I | GRGCYC | 3 cut(s) | 339, 623, 1351 |
| Esp3I | CGTCTC | 1 cut(s) | 1288 |
| FaeI | CATG | 6 cut(s) | 23, 435, 643, 661, 907, 1057 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1008, 1040 |
| FaqI | GGGAC | 1 cut(s) | 675 |
| FatI | CATG | 6 cut(s) | 19, 431, 639, 657, 903, 1053 |
| FauI | CCCGC | 2 cut(s) | 316, 347 |
| Fnu4HI | GCNGC | 9 cut(s) | 37, 290, 322, 516, 675, 869, 1044, 1047, 1163 |
| FokI | GGATG | 1 cut(s) | 1312 |
| FriOI | GRGCYC | 3 cut(s) | 339, 623, 1351 |
| Fsp4HI | GCNGC | 9 cut(s) | 37, 290, 322, 516, 675, 869, 1044, 1047, 1163 |
| FspBI | CTAG | 3 cut(s) | 65, 692, 1188 |
| GlaI | GCGC | 6 cut(s) | 320, 653, 698, 700, 860, 1180 |
| GluI | GCNGC | 9 cut(s) | 37, 290, 322, 516, 675, 869, 1044, 1047, 1163 |
| GsaI | CCCAGC | 1 cut(s) | 626 |
| GsuI | CTGGAG | 1 cut(s) | 441 |
| HaeII | RGCGCY | 1 cut(s) | 655 |
| HgaI | GACGC | 4 cut(s) | 212, 300, 1245, 1270 |
| HhaI | GCGC | 6 cut(s) | 321, 654, 699, 701, 861, 1181 |
| Hin1I | GRCGYC | 2 cut(s) | 1256, 1281 |
| Hin1II | CATG | 6 cut(s) | 23, 435, 643, 661, 907, 1057 |
| Hin6I | GCGC | 6 cut(s) | 319, 652, 697, 699, 859, 1179 |
| HinP1I | GCGC | 6 cut(s) | 319, 652, 697, 699, 859, 1179 |
| HincII | GTYRAC | 1 cut(s) | 948 |
| HindII | GTYRAC | 1 cut(s) | 948 |
| HinfI | GANTC | 5 cut(s) | 239, 247, 445, 739, 1031 |
| HphI | GGTGA | 3 cut(s) | 133, 188, 947 |
| Hpy166II | GTNNAC | 3 cut(s) | 202, 577, 948 |
| Hpy188I | TCNGA | 7 cut(s) | 479, 597, 602, 1036, 1143, 1301, 1338 |
| Hpy188III | TCNNGA | 7 cut(s) | 154, 251, 458, 487, 913, 1028, 1285 |
| Hpy8I | GTNNAC | 3 cut(s) | 202, 577, 948 |
| Hpy99I | CGWCG | 3 cut(s) | 102, 149, 1291 |
| HpyAV | CCTTC | 6 cut(s) | 145, 176, 359, 834, 1034, 1338 |
| HpyCH4III | ACNGT | 5 cut(s) | 29, 145, 176, 372, 999 |
| HpyCH4IV | ACGT | 3 cut(s) | 97, 668, 807 |
| HpyCH4V | TGCA | 8 cut(s) | 435, 525, 639, 812, 881, 920, 1057, 1249 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 42, 123, 683, 707, 865, 887 |
| HpyF3I | CTNAG | 3 cut(s) | 243, 872, 1298 |
| HpySE526I | ACGT | 3 cut(s) | 97, 668, 807 |
| Hsp92I | GRCGYC | 2 cut(s) | 1256, 1281 |
| Hsp92II | CATG | 6 cut(s) | 23, 435, 643, 661, 907, 1057 |
| HspAI | GCGC | 6 cut(s) | 319, 652, 697, 699, 859, 1179 |
| KpnI | GGTACC | 1 cut(s) | 428 |
| KroI | GCCGGC | 1 cut(s) | 45 |
| KroNI | GCCGGC | 1 cut(s) | 47 |
| Kzo9I | GATC | 5 cut(s) | 474, 479, 592, 597, 1290 |
| LguI | GCTCTTC | 1 cut(s) | 724 |
| LmnI | GCTCC | 4 cut(s) | 208, 707, 1120, 1135 |
| Lsp1109I | GCAGC | 5 cut(s) | 276, 686, 1030, 1033, 1174 |
| LweI | GCATC | 1 cut(s) | 421 |
| MaeI | CTAG | 3 cut(s) | 65, 692, 1188 |
| MaeII | ACGT | 3 cut(s) | 97, 668, 807 |
| MalI | GATC | 5 cut(s) | 476, 481, 594, 599, 1292 |
| MbiI | CCGCTC | 1 cut(s) | 686 |
| MboI | GATC | 5 cut(s) | 474, 479, 592, 597, 1290 |
| MboII | GAAGA | 5 cut(s) | 322, 526, 741, 1079, 1115 |
| MfeI | CAATTG | 1 cut(s) | 817 |
| MflI | RGATCY | 1 cut(s) | 479 |
| MhlI | GDGCHC | 4 cut(s) | 339, 623, 1195, 1351 |
| MluCI | AATT | 2 cut(s) | 817, 1229 |
| MluI | ACGCGT | 1 cut(s) | 1273 |
| MlyI | GAGTC | 2 cut(s) | 248, 256 |
| Mph1103I | ATGCAT | 1 cut(s) | 641 |
| MroNI | GCCGGC | 1 cut(s) | 45 |
| MseI | TTAA | 1 cut(s) | 560 |
| MunI | CAATTG | 1 cut(s) | 817 |
| Mva1269I | GAATGC | 3 cut(s) | 641, 922, 1251 |
| MvaI | CCWGG | 3 cut(s) | 549, 649, 796 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 42, 123, 683, 707, 865, 887 |
| NaeI | GCCGGC | 1 cut(s) | 47 |
| NdeII | GATC | 5 cut(s) | 474, 479, 592, 597, 1290 |
| NgoMIV | GCCGGC | 1 cut(s) | 45 |
| NlaIII | CATG | 6 cut(s) | 23, 435, 643, 661, 907, 1057 |
| NlaIV | GGNNCC | 8 cut(s) | 44, 210, 426, 604, 645, 938, 1137, 1349 |
| NmeAIII | GCCGAG | 1 cut(s) | 667 |
| NmuCI | GTSAC | 5 cut(s) | 139, 176, 745, 910, 953 |
| NruI | TCGCGA | 1 cut(s) | 252 |
| NsiI | ATGCAT | 1 cut(s) | 641 |
| NspI | RCATGY | 2 cut(s) | 435, 1057 |
| NspV | TTCGAA | 1 cut(s) | 443 |
| PaeI | GCATGC | 1 cut(s) | 435 |
| PalAI | GGCGCGCC | 1 cut(s) | 697 |
| PauI | GCGCGC | 1 cut(s) | 697 |
| PciSI | GCTCTTC | 1 cut(s) | 724 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 674 |
| PctI | GAATGC | 3 cut(s) | 641, 922, 1251 |
| PdiI | GCCGGC | 1 cut(s) | 47 |
| PfeI | GAWTC | 3 cut(s) | 445, 739, 1031 |
| PinAI | ACCGGT | 1 cut(s) | 579 |
| PkrI | GCNGC | 9 cut(s) | 38, 291, 323, 517, 676, 870, 1045, 1048, 1164 |
| Ple19I | CGATCG | 1 cut(s) | 477 |
| PleI | GAGTC | 2 cut(s) | 247, 255 |
| PpsI | GAGTC | 2 cut(s) | 247, 255 |
| Psp1406I | AACGTT | 1 cut(s) | 807 |
| Psp6I | CCWGG | 3 cut(s) | 547, 647, 794 |
| PspEI | GGTNACC | 3 cut(s) | 109, 130, 185 |
| PspFI | CCCAGC | 1 cut(s) | 622 |
| PspGI | CCWGG | 3 cut(s) | 547, 647, 794 |
| PspN4I | GGNNCC | 8 cut(s) | 44, 210, 426, 604, 645, 938, 1137, 1349 |
| PspOMI | GGGCCC | 1 cut(s) | 1347 |
| PspPI | GGNCC | 9 cut(s) | 43, 125, 269, 551, 602, 681, 1073, 1347, 1348 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 972, 1004 |
| PstI | CTGCAG | 1 cut(s) | 527 |
| PsuI | RGATCY | 1 cut(s) | 479 |
| PteI | GCGCGC | 1 cut(s) | 697 |
| PvuI | CGATCG | 1 cut(s) | 477 |
| RruI | TCGCGA | 1 cut(s) | 252 |
| RsaI | GTAC | 2 cut(s) | 162, 426 |
| RsaNI | GTAC | 2 cut(s) | 161, 425 |
| SapI | GCTCTTC | 1 cut(s) | 724 |
| SaqAI | TTAA | 1 cut(s) | 560 |
| SatI | GCNGC | 9 cut(s) | 37, 290, 322, 516, 675, 869, 1044, 1047, 1163 |
| Sau3AI | GATC | 5 cut(s) | 474, 479, 592, 597, 1290 |
| Sau96I | GGNCC | 9 cut(s) | 43, 125, 269, 551, 602, 681, 1073, 1347, 1348 |
| SchI | GAGTC | 2 cut(s) | 248, 256 |
| SduI | GDGCHC | 4 cut(s) | 339, 623, 1195, 1351 |
| SfaNI | GCATC | 1 cut(s) | 421 |
| SfcI | CTRYAG | 2 cut(s) | 504, 523 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 123 |
| SfuI | TTCGAA | 1 cut(s) | 443 |
| SgsI | GGCGCGCC | 1 cut(s) | 697 |
| SinI | GGWCC | 4 cut(s) | 269, 602, 681, 1073 |
| SmaI | CCCGGG | 2 cut(s) | 629, 1170 |
| SphI | GCATGC | 1 cut(s) | 435 |
| Sse9I | AATT | 2 cut(s) | 817, 1229 |
| SspMI | CTAG | 3 cut(s) | 65, 692, 1188 |
| TaaI | ACNGT | 5 cut(s) | 29, 145, 176, 372, 999 |
| TaiI | ACGT | 3 cut(s) | 100, 671, 810 |
| TaqI | TCGA | 8 cut(s) | 153, 225, 333, 443, 713, 727, 751, 1286 |
| TaqII | GACCGA | 1 cut(s) | 257 |
| TasI | AATT | 2 cut(s) | 817, 1229 |
| TatI | WGTACW | 1 cut(s) | 160 |
| TauI | GCSGC | 4 cut(s) | 39, 324, 518, 871 |
| TfiI | GAWTC | 3 cut(s) | 445, 739, 1031 |
| Tru1I | TTAA | 1 cut(s) | 560 |
| Tru9I | TTAA | 1 cut(s) | 560 |
| TscAI | CASTG | 1 cut(s) | 1018 |
| TseFI | GTSAC | 5 cut(s) | 139, 176, 745, 910, 953 |
| TseI | GCWGC | 5 cut(s) | 289, 674, 1043, 1046, 1162 |
| Tsp45I | GTSAC | 5 cut(s) | 139, 176, 745, 910, 953 |
| TspDTI | ATGAA | 2 cut(s) | 480, 646 |
| TspGWI | ACGGA | 2 cut(s) | 562, 679 |
| TspMI | CCCGGG | 2 cut(s) | 627, 1168 |
| TspRI | CASTG | 1 cut(s) | 1018 |
| VpaK11BI | GGWCC | 4 cut(s) | 269, 602, 681, 1073 |
| XceI | RCATGY | 2 cut(s) | 435, 1057 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 545 |
| XmaI | CCCGGG | 2 cut(s) | 627, 1168 |
| XspI | CTAG | 3 cut(s) | 65, 692, 1188 |
| Zsp2I | ATGCAT | 1 cut(s) | 641 |