Rh4BG243200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0018036
Physical Location & Seq
Forward (+)
40904559 .. 40905050
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG243200.1

Sequence Viewer

Length: 492 bp
ATGCCCGTCACGAATGCAAAGTGGCGAATAAGGAACCCGGTGTCAACCCGTCACCGAGAACGGCCTATGTTCCAAGAACCAATGCTACCAATACGGTCAGCACCAACCACTGAAGTTAGCCTTCATGATTCAGATGTTGCTGCTGCTGACATGCAAACCATTGAAGATGGTCCTCGGGGCAAAGAGCTTGAACCAGATAACAATCCCCAAGCTCCTGTTCTTCAACAACCGGAGCCTCCGAACAAGGCAAACAAATGGCAGCACCCGGGCAAGAGCGCGACTACTAGGGCACAATCCAAACTTGGAAATATATTACCAACCCCACAATTTTTATTGTTTGGAATGCAAGGGGCGTCAGCAATGGCCTCACGCGTAGGCGTCTCGACGATCTTGCTCAGACCGGGCTTTAGTCTTTGGTTGTCATCCTATCCTCTGATTAGAAGGGCCCACTATGTATCAAAATGGAAGTGGAGATTGCGTATGGATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.37

Weight (kDa)

10.49

Isoelectric Point (pI)

63.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018036)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g07761 FvH4_5g07762 FvH4_5g07800
pyrus_communis pycom461g00020 pycom461g00340
rosa_laevigata RLG00000000445 RLG00000000453 RLG00000006086
rosa_rugosa RorugMtG0000100.1
rosa_samantha Rh4AG240000 Rh4BG243200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 278, 372
AcuI CTGAAG 1 cut(s) 132
AcyI GRCGYC 2 cut(s) 353, 378
AflIII ACRYGT 1 cut(s) 370
AgsI TTSAA 3 cut(s) 164, 191, 224
AjuI GAANNNNNNNTTGG 2 cut(s) 201, 233
AluBI AGCT 2 cut(s) 187, 212
AluI AGCT 2 cut(s) 187, 212
Alw26I GTCTC 1 cut(s) 385
Ama87I CYCGRG 2 cut(s) 174, 265
AoxI GGCC 3 cut(s) 62, 363, 444
ApaI GGGCCC 1 cut(s) 448
ApeKI GCWGC 3 cut(s) 140, 143, 259
AspLEI GCGC 1 cut(s) 278
AspS9I GGNCC 3 cut(s) 170, 444, 445
AsuC2I CCSGG 4 cut(s) 38, 266, 267, 402
AsuHPI GGTGA 1 cut(s) 44
AvaI CYCGRG 2 cut(s) 174, 265
AvaII GGWCC 1 cut(s) 170
BaeGI GKGCMC 2 cut(s) 292, 448
BanII GRGCYC 1 cut(s) 448
BbvI GCAGC 3 cut(s) 127, 130, 271
BccI CCATC 2 cut(s) 161, 479
BceAI ACGGC 1 cut(s) 77
BcgI CGANNNNNNTGC 2 cut(s) 373, 407
BcnI CCSGG 4 cut(s) 38, 266, 267, 402
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 1 cut(s) 285
BisI GCNGC 3 cut(s) 141, 144, 260
BlsI GCNGC 3 cut(s) 142, 145, 261
Bme1390I CCNGG 4 cut(s) 38, 266, 267, 402
Bme18I GGWCC 1 cut(s) 170
BmeT110I CYCGRG 2 cut(s) 174, 265
BmgT120I GGNCC 3 cut(s) 170, 444, 445
BmiI GGNNCC 3 cut(s) 35, 234, 446
BmrFI CCNGG 4 cut(s) 38, 266, 267, 402
BpuMI CCSGG 4 cut(s) 38, 266, 267, 402
BsaBI GATNNNNATC 1 cut(s) 201
BsaHI GRCGYC 2 cut(s) 353, 378
BsaJI CCNNGG 2 cut(s) 173, 265
BsaWI WCCGGW 1 cut(s) 229
BsaXI ACNNNNNCTCC 1 cut(s) 463
Bse3DI GCAATG 1 cut(s) 366
Bse8I GATNNNNATC 1 cut(s) 201
BseDI CCNNGG 2 cut(s) 173, 265
BseGI GGATG 2 cut(s) 422, 490
BseJI GATNNNNATC 1 cut(s) 201
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 1 cut(s) 409
BseSI GKGCMC 2 cut(s) 292, 448
BseXI GCAGC 3 cut(s) 127, 130, 271
Bsh1236I CGCG 2 cut(s) 278, 372
BshFI GGCC 3 cut(s) 64, 365, 446
BsiHKCI CYCGRG 2 cut(s) 174, 265
BsiSI CCGG 4 cut(s) 38, 230, 266, 401
BsmAI GTCTC 1 cut(s) 385
BsmBI CGTCTC 1 cut(s) 385
BsmI GAATGC 2 cut(s) 19, 348
BsnI GGCC 3 cut(s) 64, 365, 446
BsoBI CYCGRG 2 cut(s) 174, 265
Bsp120I GGGCCC 1 cut(s) 444
Bsp1286I GDGCHC 2 cut(s) 292, 448
Bsp143I GATC 1 cut(s) 387
BspANI GGCC 3 cut(s) 64, 365, 446
BspCNI CTCAG 1 cut(s) 408
BspFNI CGCG 2 cut(s) 278, 372
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 3 cut(s) 35, 234, 446
BsrDI GCAATG 1 cut(s) 366
BssECI CCNNGG 2 cut(s) 173, 265
BssMI GATC 1 cut(s) 387
BssNI GRCGYC 2 cut(s) 353, 378
Bst4CI ACNGT 1 cut(s) 96
BstACI GRCGYC 2 cut(s) 353, 378
BstDEI CTNAG 1 cut(s) 395
BstF5I GGATG 2 cut(s) 422, 490
BstFNI CGCG 2 cut(s) 278, 372
BstHHI GCGC 1 cut(s) 278
BstKTI GATC 1 cut(s) 390
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 1 cut(s) 387
BstNSI RCATGY 1 cut(s) 154
BstSCI CCNGG 4 cut(s) 36, 264, 265, 400
BstSLI GKGCMC 2 cut(s) 292, 448
BstUI CGCG 2 cut(s) 278, 372
BstV1I GCAGC 3 cut(s) 127, 130, 271
BsuRI GGCC 3 cut(s) 64, 365, 446
BtsCI GGATG 2 cut(s) 422, 490
BtsIMutI CAGTG 1 cut(s) 108
CciI TCATGA 1 cut(s) 124
CfoI GCGC 1 cut(s) 278
Cfr13I GGNCC 3 cut(s) 170, 444, 445
Cfr9I CCCGGG 1 cut(s) 265
CseI GACGC 2 cut(s) 342, 367
CviAII CATG 2 cut(s) 125, 151
CviJI RGCY 8 cut(s) 64, 120, 187, 212, 235, 365, 405, 446
CviKI_1 RGCY 8 cut(s) 64, 120, 187, 212, 235, 365, 405, 446
DdeI CTNAG 1 cut(s) 395
DpnI GATC 1 cut(s) 389
DpnII GATC 1 cut(s) 387
Eco24I GRGCYC 1 cut(s) 448
Eco47I GGWCC 1 cut(s) 170
Eco57I CTGAAG 1 cut(s) 132
Eco88I CYCGRG 2 cut(s) 174, 265
EcoO109I RGGNCCY 1 cut(s) 444
EcoT38I GRGCYC 1 cut(s) 448
Esp3I CGTCTC 1 cut(s) 385
FaeI CATG 2 cut(s) 128, 154
FaiI YATR 6 cut(s) 68, 126, 152, 311, 453, 482
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FatI CATG 2 cut(s) 124, 150
Fnu4HI GCNGC 3 cut(s) 141, 144, 260
FokI GGATG 1 cut(s) 409
FriOI GRGCYC 1 cut(s) 448
Fsp4HI GCNGC 3 cut(s) 141, 144, 260
FspBI CTAG 1 cut(s) 285
GlaI GCGC 1 cut(s) 277
GluI GCNGC 3 cut(s) 141, 144, 260
HaeIII GGCC 3 cut(s) 64, 365, 446
HapII CCGG 4 cut(s) 38, 230, 266, 401
HgaI GACGC 2 cut(s) 342, 367
HhaI GCGC 1 cut(s) 278
Hin1I GRCGYC 2 cut(s) 353, 378
Hin1II CATG 2 cut(s) 128, 154
Hin6I GCGC 1 cut(s) 276
HinP1I GCGC 1 cut(s) 276
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HinfI GANTC 1 cut(s) 128
HpaII CCGG 4 cut(s) 38, 230, 266, 401
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 4 cut(s) 133, 240, 398, 435
Hpy188III TCNNGA 3 cut(s) 10, 125, 382
Hpy8I GTNNAC 1 cut(s) 45
Hpy99I CGWCG 1 cut(s) 388
HpyAV CCTTC 2 cut(s) 131, 435
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4V TGCA 3 cut(s) 17, 154, 346
HpyF3I CTNAG 1 cut(s) 395
Hsp92I GRCGYC 2 cut(s) 353, 378
Hsp92II CATG 2 cut(s) 128, 154
HspAI GCGC 1 cut(s) 276
Kzo9I GATC 1 cut(s) 387
LmnI GCTCC 2 cut(s) 217, 232
LpnPI CCDG 6 cut(s) 51, 207, 228, 243, 279, 414
Lsp1109I GCAGC 3 cut(s) 127, 130, 271
MaeI CTAG 1 cut(s) 285
MaeIII GTNAC 2 cut(s) 7, 50
MalI GATC 1 cut(s) 389
MboI GATC 1 cut(s) 387
MboII GAAGA 2 cut(s) 176, 212
MhlI GDGCHC 2 cut(s) 292, 448
MluCI AATT 1 cut(s) 326
MluI ACGCGT 1 cut(s) 370
MnlI CCTC 4 cut(s) 183, 246, 376, 441
MspI CCGG 4 cut(s) 38, 230, 266, 401
MspR9I CCNGG 4 cut(s) 38, 266, 267, 402
Mva1269I GAATGC 2 cut(s) 19, 348
MvnI CGCG 2 cut(s) 278, 372
NciI CCSGG 4 cut(s) 38, 266, 267, 402
NdeII GATC 1 cut(s) 387
NlaIII CATG 2 cut(s) 128, 154
NlaIV GGNNCC 3 cut(s) 35, 234, 446
NmuCI GTSAC 2 cut(s) 7, 50
NspI RCATGY 1 cut(s) 154
PagI TCATGA 1 cut(s) 124
PctI GAATGC 2 cut(s) 19, 348
PfeI GAWTC 1 cut(s) 128
PkrI GCNGC 3 cut(s) 142, 145, 261
PspN4I GGNNCC 3 cut(s) 35, 234, 446
PspOMI GGGCCC 1 cut(s) 444
PspPI GGNCC 3 cut(s) 170, 444, 445
PsrI GAACNNNNNNTAC 2 cut(s) 69, 101
SatI GCNGC 3 cut(s) 141, 144, 260
Sau3AI GATC 1 cut(s) 387
Sau96I GGNCC 3 cut(s) 170, 444, 445
ScrFI CCNGG 4 cut(s) 38, 266, 267, 402
SduI GDGCHC 2 cut(s) 292, 448
SetI ASST 2 cut(s) 189, 214
SinI GGWCC 1 cut(s) 170
SmaI CCCGGG 1 cut(s) 267
Sse9I AATT 1 cut(s) 326
SspMI CTAG 1 cut(s) 285
StyD4I CCNGG 4 cut(s) 36, 264, 265, 400
TaaI ACNGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 383
TasI AATT 1 cut(s) 326
TfiI GAWTC 1 cut(s) 128
TscAI CASTG 1 cut(s) 115
TseFI GTSAC 2 cut(s) 7, 50
TseI GCWGC 3 cut(s) 140, 143, 259
Tsp45I GTSAC 2 cut(s) 7, 50
TspDTI ATGAA 1 cut(s) 113
TspMI CCCGGG 1 cut(s) 265
TspRI CASTG 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 170
XceI RCATGY 1 cut(s) 154
XmaI CCCGGG 1 cut(s) 265
XspI CTAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.