RLG00000006086

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018036
Physical Location & Seq
Reverse (-)
4221185 .. 4222056
872 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006086

Sequence Viewer

Length: 510 bp
ATGCCCGTCACGAATGCAAAGTGGCGAATAAGGAATCTAGTATCAACCCATCGCCGAGAACGACCTATGTTCCAAGAACCAATGCTACCAATATGGTCAGCACCAGCCACTGAAGTTAGCCTTCGTGATTCAGATGTTGCTGCTGCTGACATGCAAAGGGGCAAAGAGCTTGAACCAGATAACAATCCCCAAGCTCCTGTTCTTCAACAACTAGAGCCTCTGAACAAGGCAAACAAATGGCAGCACCCAGGCAAGAGCGCGACTACTAGGGCACAATCCAAACTTGGAAATATATTACCAACCCCACAATTTTTATTGTTTGGAATGCAAGGGGCGTCAGCAATGGCCTCACGCGTAGGCGTCTCGACGATCTTGCTCAGACCGGGCTTTAGTCTTTGGTTGTCATCCTATCCTCTGATTAGAAGGGCCCACTATGTATCAAAATGGAAGTGGAGATTGCAAACGTACAAGAGATTTACTCTCAAACTACCTGCCCATATACCCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.29

Weight (kDa)

10.79

Isoelectric Point (pI)

62.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018036)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g07761 FvH4_5g07762 FvH4_5g07800
pyrus_communis pycom461g00020 pycom461g00340
rosa_laevigata RLG00000000445 RLG00000000453 RLG00000006086
rosa_rugosa RorugMtG0000100.1
rosa_samantha Rh4AG240000 Rh4BG243200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 499
AccII CGCG 2 cut(s) 260, 354
AcuI CTGAAG 1 cut(s) 132
AcyI GRCGYC 2 cut(s) 335, 360
AfaI GTAC 1 cut(s) 467
AflIII ACRYGT 1 cut(s) 352
AgsI TTSAA 2 cut(s) 173, 206
AjnI CCWGG 1 cut(s) 247
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
AluBI AGCT 2 cut(s) 169, 194
AluI AGCT 2 cut(s) 169, 194
Alw26I GTCTC 1 cut(s) 367
AlwNI CAGNNNCTG 1 cut(s) 110
Ama87I CYCGRG 1 cut(s) 503
AoxI GGCC 2 cut(s) 345, 426
ApaI GGGCCC 1 cut(s) 430
ApeKI GCWGC 3 cut(s) 140, 143, 241
AspLEI GCGC 1 cut(s) 260
AspS9I GGNCC 2 cut(s) 426, 427
AsuC2I CCSGG 1 cut(s) 384
AvaI CYCGRG 1 cut(s) 503
BaeGI GKGCMC 2 cut(s) 274, 430
BanII GRGCYC 1 cut(s) 430
BbvI GCAGC 3 cut(s) 127, 130, 253
BccI CCATC 1 cut(s) 57
BcgI CGANNNNNNTGC 2 cut(s) 355, 389
BciT130I CCWGG 1 cut(s) 249
BcnI CCSGG 1 cut(s) 384
BcoDI GTCTC 1 cut(s) 367
BfaI CTAG 3 cut(s) 38, 212, 267
BfuAI ACCTGC 1 cut(s) 499
BisI GCNGC 3 cut(s) 141, 144, 242
BlsI GCNGC 3 cut(s) 142, 145, 243
Bme1390I CCNGG 2 cut(s) 249, 384
BmeT110I CYCGRG 1 cut(s) 503
BmgT120I GGNCC 2 cut(s) 426, 427
BmiI GGNNCC 1 cut(s) 428
BmrFI CCNGG 2 cut(s) 249, 384
BplI GAGNNNNNCTC 2 cut(s) 463, 495
BpuMI CCSGG 1 cut(s) 384
BsaBI GATNNNNATC 1 cut(s) 183
BsaHI GRCGYC 2 cut(s) 335, 360
BsaJI CCNNGG 1 cut(s) 247
Bse3DI GCAATG 1 cut(s) 348
Bse8I GATNNNNATC 1 cut(s) 183
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 247
BseGI GGATG 1 cut(s) 404
BseJI GATNNNNATC 1 cut(s) 183
BseMI GCAATG 1 cut(s) 348
BseMII CTCAG 1 cut(s) 391
BseSI GKGCMC 2 cut(s) 274, 430
BseXI GCAGC 3 cut(s) 127, 130, 253
Bsh1236I CGCG 2 cut(s) 260, 354
BshFI GGCC 2 cut(s) 347, 428
BsiHKCI CYCGRG 1 cut(s) 503
BsiSI CCGG 1 cut(s) 383
BsmAI GTCTC 1 cut(s) 367
BsmBI CGTCTC 1 cut(s) 367
BsmI GAATGC 2 cut(s) 19, 330
BsnI GGCC 2 cut(s) 347, 428
BsoBI CYCGRG 1 cut(s) 503
Bsp120I GGGCCC 1 cut(s) 426
Bsp1286I GDGCHC 2 cut(s) 274, 430
Bsp143I GATC 1 cut(s) 369
BspANI GGCC 2 cut(s) 347, 428
BspCNI CTCAG 1 cut(s) 390
BspFNI CGCG 2 cut(s) 260, 354
BspLI GGNNCC 1 cut(s) 428
BspMI ACCTGC 1 cut(s) 499
BsrDI GCAATG 1 cut(s) 348
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 1 cut(s) 369
BssNI GRCGYC 2 cut(s) 335, 360
Bst2UI CCWGG 1 cut(s) 249
BstACI GRCGYC 2 cut(s) 335, 360
BstDEI CTNAG 1 cut(s) 377
BstF5I GGATG 1 cut(s) 404
BstFNI CGCG 2 cut(s) 260, 354
BstHHI GCGC 1 cut(s) 260
BstKTI GATC 1 cut(s) 372
BstMAI GTCTC 1 cut(s) 367
BstMBI GATC 1 cut(s) 369
BstNI CCWGG 1 cut(s) 249
BstNSI RCATGY 1 cut(s) 154
BstSCI CCNGG 2 cut(s) 247, 382
BstSLI GKGCMC 2 cut(s) 274, 430
BstUI CGCG 2 cut(s) 260, 354
BstV1I GCAGC 3 cut(s) 127, 130, 253
BsuRI GGCC 2 cut(s) 347, 428
BtgZI GCGATG 1 cut(s) 35
BtsCI GGATG 1 cut(s) 404
BtsIMutI CAGTG 1 cut(s) 108
BveI ACCTGC 1 cut(s) 499
CaiI CAGNNNCTG 1 cut(s) 110
CfoI GCGC 1 cut(s) 260
Cfr13I GGNCC 2 cut(s) 426, 427
CseI GACGC 2 cut(s) 324, 349
Csp6I GTAC 1 cut(s) 466
CviAII CATG 1 cut(s) 151
CviJI RGCY 8 cut(s) 107, 120, 169, 194, 217, 347, 387, 428
CviKI_1 RGCY 8 cut(s) 107, 120, 169, 194, 217, 347, 387, 428
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 1 cut(s) 377
DpnI GATC 1 cut(s) 371
DpnII GATC 1 cut(s) 369
Eco24I GRGCYC 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 132
Eco88I CYCGRG 1 cut(s) 503
EcoO109I RGGNCCY 1 cut(s) 426
EcoRII CCWGG 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 430
Esp3I CGTCTC 1 cut(s) 367
FaeI CATG 1 cut(s) 154
FaiI YATR 7 cut(s) 68, 94, 152, 293, 435, 498, 500
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FatI CATG 1 cut(s) 150
Fnu4HI GCNGC 3 cut(s) 141, 144, 242
FokI GGATG 1 cut(s) 391
FriOI GRGCYC 1 cut(s) 430
Fsp4HI GCNGC 3 cut(s) 141, 144, 242
FspBI CTAG 3 cut(s) 38, 212, 267
GlaI GCGC 1 cut(s) 259
GluI GCNGC 3 cut(s) 141, 144, 242
HaeIII GGCC 2 cut(s) 347, 428
HapII CCGG 1 cut(s) 383
HgaI GACGC 2 cut(s) 324, 349
HhaI GCGC 1 cut(s) 260
Hin1I GRCGYC 2 cut(s) 335, 360
Hin1II CATG 1 cut(s) 154
Hin6I GCGC 1 cut(s) 258
HinP1I GCGC 1 cut(s) 258
HinfI GANTC 2 cut(s) 34, 128
HpaII CCGG 1 cut(s) 383
Hpy188I TCNGA 4 cut(s) 133, 222, 380, 417
Hpy188III TCNNGA 3 cut(s) 10, 125, 364
Hpy99I CGWCG 1 cut(s) 370
HpyAV CCTTC 2 cut(s) 131, 417
HpyCH4IV ACGT 1 cut(s) 464
HpyCH4V TGCA 4 cut(s) 17, 154, 328, 460
HpyF3I CTNAG 1 cut(s) 377
HpySE526I ACGT 1 cut(s) 464
Hsp92I GRCGYC 2 cut(s) 335, 360
Hsp92II CATG 1 cut(s) 154
HspAI GCGC 1 cut(s) 258
Kzo9I GATC 1 cut(s) 369
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 7 cut(s) 117, 189, 210, 234, 261, 396, 504
Lsp1109I GCAGC 3 cut(s) 127, 130, 253
MaeI CTAG 3 cut(s) 38, 212, 267
MaeII ACGT 1 cut(s) 464
MaeIII GTNAC 1 cut(s) 7
MalI GATC 1 cut(s) 371
MboI GATC 1 cut(s) 369
MboII GAAGA 1 cut(s) 194
MhlI GDGCHC 2 cut(s) 274, 430
MluCI AATT 1 cut(s) 308
MluI ACGCGT 1 cut(s) 352
MnlI CCTC 3 cut(s) 228, 358, 423
MspI CCGG 1 cut(s) 383
MspR9I CCNGG 2 cut(s) 249, 384
Mva1269I GAATGC 2 cut(s) 19, 330
MvaI CCWGG 1 cut(s) 249
MvnI CGCG 2 cut(s) 260, 354
NciI CCSGG 1 cut(s) 384
NdeII GATC 1 cut(s) 369
NlaIII CATG 1 cut(s) 154
NlaIV GGNNCC 1 cut(s) 428
NmeAIII GCCGAG 1 cut(s) 80
NmuCI GTSAC 1 cut(s) 7
NspI RCATGY 1 cut(s) 154
PcsI WCGNNNNNNNCGW 1 cut(s) 58
PctI GAATGC 2 cut(s) 19, 330
PfeI GAWTC 2 cut(s) 34, 128
PkrI GCNGC 3 cut(s) 142, 145, 243
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 1 cut(s) 428
PspOMI GGGCCC 1 cut(s) 426
PspPI GGNCC 2 cut(s) 426, 427
PsrI GAACNNNNNNTAC 2 cut(s) 69, 101
PstNI CAGNNNCTG 1 cut(s) 110
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
SatI GCNGC 3 cut(s) 141, 144, 242
Sau3AI GATC 1 cut(s) 369
Sau96I GGNCC 2 cut(s) 426, 427
ScrFI CCNGG 2 cut(s) 249, 384
SduI GDGCHC 2 cut(s) 274, 430
SetI ASST 5 cut(s) 67, 171, 196, 467, 493
Sse9I AATT 1 cut(s) 308
SspMI CTAG 3 cut(s) 38, 212, 267
StyD4I CCNGG 2 cut(s) 247, 382
TaiI ACGT 1 cut(s) 467
TaqI TCGA 1 cut(s) 365
TasI AATT 1 cut(s) 308
TfiI GAWTC 2 cut(s) 34, 128
TscAI CASTG 1 cut(s) 115
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 3 cut(s) 140, 143, 241
Tsp45I GTSAC 1 cut(s) 7
TspRI CASTG 1 cut(s) 115
XceI RCATGY 1 cut(s) 154
XspI CTAG 3 cut(s) 38, 212, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.