RLG00000000445

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0018036
Physical Location & Seq
Reverse (-)
1002101 .. 1003499
1399 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000445

Sequence Viewer

Length: 549 bp
ATGAGGGAGCTAATCTGCTTGCTTGTGCAGGCGAGGACCGCTCGGCTAGGGCGCGCCGGAGGAGCTTCGAGTGAGGGCTGTCGAAGAGCAAAGAATCAAGTCACTCGAAGCTCTCCCCTTTGCCCCGTGCTGTCTCCCTTCCGGTTGCCCCAGGCCGAAAAACGTTGCAGTCAATTGCCCTTCCCAGGTGCGGCCCACTTGGTGTCGGATCAGCTCGACAGGTCACTCAATAGTCTTTCGCGGAGTACCCCTGTTTTAGTGAACCCTGGGAGTTGTCGGCGGCTCGACGATCTGTATTCAAAAGATGTTGCTGCTGCTGACATGCAAACCATTGAAGATGGTCCTCGGGGGCAAAGAGCTTTGAACCAGATAACAATCCCCAAGCTCCTGTTCTTCAACAACCGGAGCCTCCGAACAAGGCAAACAAATGGCAGCACCCGGGCAAGAGCGCGACTACTAGGGCACAATCCAAACTTGGAAATATATTACCAACCCCACAATTTTTATTGTTTGGAATGCAAGGGGCGTCAGCAATGGCCTCACGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

20.4

Weight (kDa)

10.29

Isoelectric Point (pI)

59.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018036)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g07761 FvH4_5g07762 FvH4_5g07800
pyrus_communis pycom461g00020 pycom461g00340
rosa_laevigata RLG00000000445 RLG00000000453 RLG00000006086
rosa_rugosa RorugMtG0000100.1
rosa_samantha Rh4AG240000 Rh4BG243200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 41
AccII CGCG 4 cut(s) 54, 241, 451, 545
AciI CCGC 4 cut(s) 39, 191, 241, 280
AclI AACGTT 1 cut(s) 163
AclWI GGATC 1 cut(s) 216
AcyI GRCGYC 1 cut(s) 526
AdeI CACNNNGTG 1 cut(s) 202
AfaI GTAC 1 cut(s) 247
AfiI CCNNNNNNNGG 2 cut(s) 185, 190
AflIII ACRYGT 1 cut(s) 543
AgsI TTSAA 4 cut(s) 300, 335, 364, 397
AjnI CCWGG 3 cut(s) 150, 184, 265
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
AluBI AGCT 6 cut(s) 10, 65, 111, 214, 359, 385
AluI AGCT 6 cut(s) 10, 65, 111, 214, 359, 385
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 1 cut(s) 216
Ama87I CYCGRG 2 cut(s) 345, 438
AoxI GGCC 3 cut(s) 153, 192, 536
ApeKI GCWGC 3 cut(s) 311, 314, 432
AscI GGCGCGCC 1 cut(s) 52
AspLEI GCGC 3 cut(s) 54, 56, 451
AspS9I GGNCC 3 cut(s) 36, 193, 341
AsuC2I CCSGG 2 cut(s) 439, 440
AvaI CYCGRG 2 cut(s) 345, 438
AvaII GGWCC 2 cut(s) 36, 341
BaeGI GKGCMC 1 cut(s) 465
BbvI GCAGC 3 cut(s) 298, 301, 444
BccI CCATC 1 cut(s) 332
BciT130I CCWGG 3 cut(s) 152, 186, 267
BcnI CCSGG 2 cut(s) 439, 440
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 2 cut(s) 47, 458
BisI GCNGC 5 cut(s) 192, 281, 312, 315, 433
BlsI GCNGC 5 cut(s) 193, 282, 313, 316, 434
Bme1390I CCNGG 5 cut(s) 152, 186, 267, 439, 440
Bme18I GGWCC 2 cut(s) 36, 341
BmeT110I CYCGRG 2 cut(s) 345, 438
BmgT120I GGNCC 3 cut(s) 36, 193, 341
BmiI GGNNCC 1 cut(s) 407
BmrFI CCNGG 5 cut(s) 152, 186, 267, 439, 440
BplI GAGNNNNNCTC 2 cut(s) 25, 57
BpuMI CCSGG 2 cut(s) 439, 440
BsaBI GATNNNNATC 1 cut(s) 374
BsaHI GRCGYC 1 cut(s) 526
BsaJI CCNNGG 6 cut(s) 150, 184, 265, 266, 344, 438
BsaWI WCCGGW 2 cut(s) 141, 402
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 190
Bse3DI GCAATG 1 cut(s) 539
Bse8I GATNNNNATC 1 cut(s) 374
BseBI CCWGG 3 cut(s) 152, 186, 267
BseDI CCNNGG 6 cut(s) 150, 184, 265, 266, 344, 438
BseJI GATNNNNATC 1 cut(s) 374
BseLI CCNNNNNNNGG 2 cut(s) 185, 190
BseMI GCAATG 1 cut(s) 539
BsePI GCGCGC 1 cut(s) 52
BseRI GAGGAG 1 cut(s) 75
BseSI GKGCMC 1 cut(s) 465
BseXI GCAGC 3 cut(s) 298, 301, 444
BsgI GTGCAG 1 cut(s) 47
Bsh1236I CGCG 4 cut(s) 54, 241, 451, 545
BshFI GGCC 3 cut(s) 155, 194, 538
BsiHKCI CYCGRG 2 cut(s) 345, 438
BsiSI CCGG 4 cut(s) 57, 142, 403, 439
BslI CCNNNNNNNGG 2 cut(s) 185, 190
BsmAI GTCTC 1 cut(s) 138
BsmI GAATGC 1 cut(s) 521
BsnI GGCC 3 cut(s) 155, 194, 538
BsoBI CYCGRG 2 cut(s) 345, 438
Bsp1286I GDGCHC 1 cut(s) 465
Bsp143I GATC 2 cut(s) 208, 289
BspACI CCGC 4 cut(s) 39, 191, 241, 280
BspANI GGCC 3 cut(s) 155, 194, 538
BspFNI CGCG 4 cut(s) 54, 241, 451, 545
BspLI GGNNCC 1 cut(s) 407
BspPI GGATC 1 cut(s) 216
BspQI GCTCTTC 1 cut(s) 79
BsrBI CCGCTC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 539
BssECI CCNNGG 6 cut(s) 150, 184, 265, 266, 344, 438
BssHII GCGCGC 1 cut(s) 52
BssMI GATC 2 cut(s) 208, 289
BssNI GRCGYC 1 cut(s) 526
Bst2UI CCWGG 3 cut(s) 152, 186, 267
Bst6I CTCTTC 1 cut(s) 79
BstACI GRCGYC 1 cut(s) 526
BstC8I GCNNGC 3 cut(s) 20, 30, 54
BstFNI CGCG 4 cut(s) 54, 241, 451, 545
BstHHI GCGC 3 cut(s) 54, 56, 451
BstKTI GATC 2 cut(s) 211, 292
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 2 cut(s) 208, 289
BstMWI GCNNNNNNNGC 2 cut(s) 38, 62
BstNI CCWGG 3 cut(s) 152, 186, 267
BstNSI RCATGY 1 cut(s) 325
BstSCI CCNGG 5 cut(s) 150, 184, 265, 437, 438
BstSLI GKGCMC 1 cut(s) 465
BstUI CGCG 4 cut(s) 54, 241, 451, 545
BstV1I GCAGC 3 cut(s) 298, 301, 444
BsuRI GGCC 3 cut(s) 155, 194, 538
Cac8I GCNNGC 3 cut(s) 20, 30, 54
CfoI GCGC 3 cut(s) 54, 56, 451
Cfr13I GGNCC 3 cut(s) 36, 193, 341
Cfr9I CCCGGG 1 cut(s) 438
CseI GACGC 1 cut(s) 515
Csp6I GTAC 1 cut(s) 246
CviAII CATG 1 cut(s) 322
CviQI GTAC 1 cut(s) 246
DpnI GATC 2 cut(s) 210, 291
DpnII GATC 2 cut(s) 208, 289
DraIII CACNNNGTG 1 cut(s) 202
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Eco47I GGWCC 2 cut(s) 36, 341
Eco88I CYCGRG 2 cut(s) 345, 438
EcoRII CCWGG 3 cut(s) 150, 184, 265
FaeI CATG 1 cut(s) 325
FaiI YATR 2 cut(s) 323, 484
FatI CATG 1 cut(s) 321
Fnu4HI GCNGC 5 cut(s) 192, 281, 312, 315, 433
Fsp4HI GCNGC 5 cut(s) 192, 281, 312, 315, 433
FspBI CTAG 2 cut(s) 47, 458
GlaI GCGC 3 cut(s) 53, 55, 450
GluI GCNGC 5 cut(s) 192, 281, 312, 315, 433
HaeIII GGCC 3 cut(s) 155, 194, 538
HapII CCGG 4 cut(s) 57, 142, 403, 439
HgaI GACGC 1 cut(s) 515
HhaI GCGC 3 cut(s) 54, 56, 451
Hin1I GRCGYC 1 cut(s) 526
Hin1II CATG 1 cut(s) 325
Hin6I GCGC 3 cut(s) 52, 54, 449
HinP1I GCGC 3 cut(s) 52, 54, 449
HinfI GANTC 1 cut(s) 94
HpaII CCGG 4 cut(s) 57, 142, 403, 439
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 2 cut(s) 208, 413
Hpy8I GTNNAC 1 cut(s) 262
Hpy99I CGWCG 1 cut(s) 290
HpyAV CCTTC 2 cut(s) 148, 190
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 4 cut(s) 28, 168, 325, 519
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 62
HpySE526I ACGT 1 cut(s) 163
Hsp92I GRCGYC 1 cut(s) 526
Hsp92II CATG 1 cut(s) 325
HspAI GCGC 3 cut(s) 52, 54, 449
Kzo9I GATC 2 cut(s) 208, 289
LguI GCTCTTC 1 cut(s) 79
LmnI GCTCC 4 cut(s) 7, 62, 390, 405
Lsp1109I GCAGC 3 cut(s) 298, 301, 444
MaeI CTAG 2 cut(s) 47, 458
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 2 cut(s) 100, 222
MalI GATC 2 cut(s) 210, 291
MbiI CCGCTC 1 cut(s) 41
MboI GATC 2 cut(s) 208, 289
MboII GAAGA 3 cut(s) 96, 347, 385
MfeI CAATTG 1 cut(s) 173
MhlI GDGCHC 1 cut(s) 465
MluCI AATT 2 cut(s) 173, 499
MluI ACGCGT 1 cut(s) 543
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 6 cut(s) 27, 53, 67, 354, 419, 549
MspI CCGG 4 cut(s) 57, 142, 403, 439
MspR9I CCNGG 5 cut(s) 152, 186, 267, 439, 440
MunI CAATTG 1 cut(s) 173
Mva1269I GAATGC 1 cut(s) 521
MvaI CCWGG 3 cut(s) 152, 186, 267
MvnI CGCG 4 cut(s) 54, 241, 451, 545
MwoI GCNNNNNNNGC 2 cut(s) 38, 62
NciI CCSGG 2 cut(s) 439, 440
NdeII GATC 2 cut(s) 208, 289
NlaIII CATG 1 cut(s) 325
NlaIV GGNNCC 1 cut(s) 407
NmeAIII GCCGAG 1 cut(s) 22
NmuCI GTSAC 2 cut(s) 100, 222
NspI RCATGY 1 cut(s) 325
PalAI GGCGCGCC 1 cut(s) 52
PasI CCCWGGG 1 cut(s) 266
PauI GCGCGC 1 cut(s) 52
PciSI GCTCTTC 1 cut(s) 79
PctI GAATGC 1 cut(s) 521
PfeI GAWTC 1 cut(s) 94
PkrI GCNGC 5 cut(s) 193, 282, 313, 316, 434
Psp1406I AACGTT 1 cut(s) 163
Psp6I CCWGG 3 cut(s) 150, 184, 265
PspGI CCWGG 3 cut(s) 150, 184, 265
PspN4I GGNNCC 1 cut(s) 407
PspPI GGNCC 3 cut(s) 36, 193, 341
PteI GCGCGC 1 cut(s) 52
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
SapI GCTCTTC 1 cut(s) 79
SatI GCNGC 5 cut(s) 192, 281, 312, 315, 433
Sau3AI GATC 2 cut(s) 208, 289
Sau96I GGNCC 3 cut(s) 36, 193, 341
ScrFI CCNGG 5 cut(s) 152, 186, 267, 439, 440
SduI GDGCHC 1 cut(s) 465
SetI ASST 9 cut(s) 12, 67, 113, 166, 190, 216, 224, 361, 387
SgsI GGCGCGCC 1 cut(s) 52
SinI GGWCC 2 cut(s) 36, 341
SmaI CCCGGG 1 cut(s) 440
Sse9I AATT 2 cut(s) 173, 499
SsiI CCGC 4 cut(s) 39, 191, 241, 280
SspMI CTAG 2 cut(s) 47, 458
StyD4I CCNGG 5 cut(s) 150, 184, 265, 437, 438
TaiI ACGT 1 cut(s) 166
TaqI TCGA 5 cut(s) 68, 82, 106, 216, 285
TasI AATT 2 cut(s) 173, 499
TauI GCSGC 2 cut(s) 194, 283
TfiI GAWTC 1 cut(s) 94
TseFI GTSAC 2 cut(s) 100, 222
TseI GCWGC 3 cut(s) 311, 314, 432
Tsp45I GTSAC 2 cut(s) 100, 222
TspMI CCCGGG 1 cut(s) 438
VpaK11BI GGWCC 2 cut(s) 36, 341
XceI RCATGY 1 cut(s) 325
XmaI CCCGGG 1 cut(s) 438
XspI CTAG 2 cut(s) 47, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.