FvH4_5g07762

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0018036
Physical Location & Seq
Forward (+)
4547226 .. 4549572
2347 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g07762.t1

Sequence Viewer

Length: 1557 bp
ATGGCTTCCCCAAATCTCATTTTTCTTCTGGTTCTCTTCTCCCTCGCAACCTCTATCTCCTCCATTTCCTCCACCGTAGCTTCGCCCGGAGTAAACCCCACCGCCGCTTCGCCCTCTTCCACCTCCATTTTCTCTACCGCCGCGGCTTCACCCGCTGTGGTTTTCCCCATCGTCACTATTCTCACCATACTCGCTCTGGCCAAAAGCCTCATCAACTCCCCCCACCTCTCCATGGCCCTCGGCCTCGGCCTCAGCTCGCCGACAGCCACCATATTTTTTCCGCCGAACATGGCCTTCCGGCACTCCGAACCTCCCTCGATACCTCTTGTTCGGTATCATGTTTCTCCTCGACGGCTCACCATCAAAACACTAGCGCGAGGCACCACAATTGAGATGGTTCGACACCGCAACAATATGACAGTCACCTCGTTCTTTGCCAGCGACGGCTACACCACCATCAACAACGTCTGGGTCGACCCGACACCAATTGTGGACGACGGGTCGAAAATCCGGCAAGTGGGTGACGTTCTTCGTGCCATCGAGTACTCCATCATGGCCGCTTTTGTAGAGTCGCAAGTTACGGAGTTCAGTGGGTCCACGCTCTTCGCCGAGGTGGACGATGCTGTGGAGGAGTATGCAAATCTCAACTCCGACTACGCACAGTTCTTCAAGGCGCGAGACGGTCAAGAAAAACTGGTTTTAAAGAGAAGCTTGGTGATAGAGGGATGTGAGCAAGGTTCTAAAAACGGCTTGAGCGGCCGCCTTAGCGCTCAGAGAAGGGTTGCCGTCCCGATTTTCTTCAAATCGGCGAGTAGGAAGAATAAACTATGGATTTTGAGTTTAACTCCGATACCGAAGAAGTACTTGAAGGTACTTGAAGGATGTGGAGAAGAAGAATTGGAGGACTTCGCTCGGAGTGGTTTACCCCACCGCCGCTTCGCCCTCTTCCACCTCTGTTTCCTCTACCGCCACGGCTTCACCCGCCGTGGTTTCCCCCATCGTCACCATCCTTCCCATACTCGCTCTGGTCAAAAGTCTCACCGACTCCCCCACCTCTCCATTGCCCTCGGCCTCGGCCTCAGCGAGTCGATAGCCACCATATTTCTTCCGCCGGACACGGCCTTCAGCACTCCGGACCTCTCTGATACCACTTGTCCGACGCTTCAACGCCGCTACAATCTAACGGTCACCTTGTCCTTTGCCGGCGACGGCTACGCCTCCATCAACTGCGTCTGGGTCAACCCGACACCAGTTGTGTACAACGGGTCGGTTGTGATCTATCGGGTGGTGAAGCCATTCCCCGTTAATAGGTCAGCTTCAGCGCATACGGCTCCGGCTTCGGTGAAGCCACCTCAGCAGAAAATCTGGCAAGTGGGTGGCGTTCTACGCACCATCGACTGCTTTATCATGATTGCTTTCGTAGAGTCACAAGTTACGGAGTTCAGTGGGTCCACGCTCTTTGTCGAGGTGGACGATGCTATGGAGGAGTATGCAAATCTCAACTCCAACTACGCTCAGTTCTTCATGGCGCGAGTTGCTCCCCGACGACTGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

519

Amino Acids

56.89

Weight (kDa)

9.3

Isoelectric Point (pI)

45.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018036)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g07761 FvH4_5g07762 FvH4_5g07800
pyrus_communis pycom461g00020 pycom461g00340
rosa_laevigata RLG00000000445 RLG00000000453 RLG00000006086
rosa_rugosa RorugMtG0000100.1
rosa_samantha Rh4AG240000 Rh4BG243200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 380
AccBSI CCGCTC 1 cut(s) 756
AccI GTMKAC 1 cut(s) 474
AccII CGCG 4 cut(s) 143, 376, 676, 1531
AccIII TCCGGA 1 cut(s) 1132
AcoI YGGCCR 3 cut(s) 198, 555, 757
AcuI CTGAAG 2 cut(s) 1108, 1302
AfaI GTAC 4 cut(s) 545, 863, 873, 1259
AfeI AGCGCT 1 cut(s) 769
AfiI CCNNNNNNNGG 3 cut(s) 232, 517, 1308
AgsI TTSAA 5 cut(s) 670, 802, 868, 878, 1166
AhdI GACNNNNNGTC 1 cut(s) 499
AluBI AGCT 5 cut(s) 80, 255, 711, 1316, 1554
AluI AGCT 5 cut(s) 80, 255, 711, 1316, 1554
Alw26I GTCTC 2 cut(s) 672, 1041
Aor13HI TCCGGA 1 cut(s) 1132
Aor51HI AGCGCT 1 cut(s) 769
Asp700I GAANNNNTTC 1 cut(s) 1295
AspLEI GCGC 5 cut(s) 376, 676, 770, 1324, 1531
AspS9I GGNCC 4 cut(s) 235, 594, 1135, 1449
AsuC2I CCSGG 1 cut(s) 87
AvaII GGWCC 3 cut(s) 594, 1135, 1449
BalI TGGCCA 1 cut(s) 200
BanI GGYRCC 1 cut(s) 380
BbvCI CCTCAGC 3 cut(s) 251, 1079, 1353
BceAI ACGGC 9 cut(s) 368, 460, 763, 770, 969, 988, 1134, 1225, 1344
BcnI CCSGG 1 cut(s) 87
BcoDI GTCTC 2 cut(s) 672, 1041
BfaI CTAG 2 cut(s) 371, 1555
BfoI RGCGCY 1 cut(s) 771
BisI GCNGC 8 cut(s) 105, 141, 144, 558, 757, 760, 934, 1171
BlsI GCNGC 8 cut(s) 106, 142, 145, 559, 758, 761, 935, 1172
BmcAI AGTACT 2 cut(s) 545, 863
Bme1390I CCNGG 1 cut(s) 87
Bme18I GGWCC 3 cut(s) 594, 1135, 1449
BmeRI GACNNNNNGTC 1 cut(s) 499
BmgT120I GGNCC 4 cut(s) 235, 594, 1135, 1449
BmiI GGNNCC 4 cut(s) 382, 595, 1332, 1450
BmrFI CCNGG 1 cut(s) 87
BmsI GCATC 2 cut(s) 610, 1465
BplI GAGNNNNNCTC 2 cut(s) 829, 861
Bpu10I CCTNAGC 4 cut(s) 251, 764, 1079, 1353
BpuEI CTTGAG 1 cut(s) 772
BpuMI CCSGG 1 cut(s) 87
BsaJI CCNNGG 9 cut(s) 141, 231, 238, 244, 609, 970, 985, 1066, 1072
BsaWI WCCGGW 1 cut(s) 1132
Bsc4I CCNNNNNNNGG 3 cut(s) 232, 517, 1308
Bse118I RCCGGY 1 cut(s) 1202
Bse1I ACTGG 2 cut(s) 699, 1250
Bse3DI GCAATG 1 cut(s) 1059
BseAI TCCGGA 1 cut(s) 1132
BseDI CCNNGG 9 cut(s) 141, 231, 238, 244, 609, 970, 985, 1066, 1072
BseGI GGATG 3 cut(s) 731, 887, 1006
BseLI CCNNNNNNNGG 3 cut(s) 232, 517, 1308
BseMI GCAATG 1 cut(s) 1059
BseMII CTCAG 6 cut(s) 265, 785, 1093, 1367, 1529, 1541
BseNI ACTGG 2 cut(s) 699, 1250
BseRI GAGGAG 4 cut(s) 49, 336, 644, 1499
BseX3I CGGCCG 1 cut(s) 757
Bsh1236I CGCG 4 cut(s) 143, 376, 676, 1531
Bsh1285I CGRYCG 1 cut(s) 760
BshNI GGYRCC 1 cut(s) 380
BsiEI CGRYCG 1 cut(s) 760
BsiSI CCGG 7 cut(s) 87, 298, 511, 1112, 1133, 1203, 1334
BslFI GGGAC 1 cut(s) 773
BslI CCNNNNNNNGG 3 cut(s) 232, 517, 1308
BsmAI GTCTC 2 cut(s) 672, 1041
BsmBI CGTCTC 1 cut(s) 672
BsmFI GGGAC 1 cut(s) 773
Bsp13I TCCGGA 1 cut(s) 1132
Bsp1407I TGTACA 1 cut(s) 1257
Bsp143I GATC 1 cut(s) 1275
Bsp19I CCATGG 1 cut(s) 231
BspCNI CTCAG 6 cut(s) 264, 784, 1092, 1366, 1528, 1542
BspEI TCCGGA 1 cut(s) 1132
BspFNI CGCG 4 cut(s) 143, 376, 676, 1531
BspHI TCATGA 1 cut(s) 1407
BspLI GGNNCC 4 cut(s) 382, 595, 1332, 1450
BspQI GCTCTTC 1 cut(s) 608
BspT107I GGYRCC 1 cut(s) 380
BsrBI CCGCTC 1 cut(s) 756
BsrDI GCAATG 1 cut(s) 1059
BsrFI RCCGGY 1 cut(s) 1202
BsrGI TGTACA 1 cut(s) 1257
BsrI ACTGG 2 cut(s) 699, 1250
BssAI RCCGGY 1 cut(s) 1202
BssECI CCNNGG 9 cut(s) 141, 231, 238, 244, 609, 970, 985, 1066, 1072
BssMI GATC 1 cut(s) 1275
BssT1I CCWWGG 1 cut(s) 231
Bst4CI ACNGT 5 cut(s) 76, 421, 663, 683, 1186
Bst6I CTCTTC 4 cut(s) 41, 121, 608, 950
BstAUI TGTACA 1 cut(s) 1257
BstC8I GCNNGC 3 cut(s) 257, 439, 1204
BstDEI CTNAG 7 cut(s) 251, 764, 771, 1079, 1353, 1515, 1550
BstDSI CCRYGG 4 cut(s) 141, 231, 970, 985
BstEII GGTNACC 1 cut(s) 1186
BstF5I GGATG 3 cut(s) 731, 887, 1006
BstFNI CGCG 4 cut(s) 143, 376, 676, 1531
BstH2I RGCGCY 1 cut(s) 771
BstHHI GCGC 5 cut(s) 376, 676, 770, 1324, 1531
BstKTI GATC 1 cut(s) 1278
BstMAI GTCTC 2 cut(s) 672, 1041
BstMBI GATC 1 cut(s) 1275
BstMCI CGRYCG 1 cut(s) 760
BstMWI GCNNNNNNNGC 8 cut(s) 152, 756, 765, 981, 1328, 1354, 1386, 1535
BstPI GGTNACC 1 cut(s) 1186
BstSCI CCNGG 1 cut(s) 85
BstUI CGCG 4 cut(s) 143, 376, 676, 1531
BstZI CGGCCG 1 cut(s) 757
BtgI CCRYGG 4 cut(s) 141, 231, 970, 985
BtsCI GGATG 3 cut(s) 731, 887, 1006
BtsIMutI CAGTG 2 cut(s) 595, 1450
Cac8I GCNNGC 3 cut(s) 257, 439, 1204
CciI TCATGA 1 cut(s) 1407
CciNI GCGGCCGC 1 cut(s) 757
CfoI GCGC 5 cut(s) 376, 676, 770, 1324, 1531
Cfr10I RCCGGY 1 cut(s) 1202
Cfr13I GGNCC 4 cut(s) 235, 594, 1135, 1449
Cfr42I CCGCGG 1 cut(s) 144
CseI GACGC 2 cut(s) 1168, 1219
Csp6I GTAC 4 cut(s) 544, 862, 872, 1258
CspCI CAANNNNNGTGG 2 cut(s) 1441, 1476
CviAII CATG 6 cut(s) 232, 289, 338, 553, 1408, 1525
CviQI GTAC 4 cut(s) 544, 862, 872, 1258
DdeI CTNAG 7 cut(s) 251, 764, 771, 1079, 1353, 1515, 1550
DpnI GATC 1 cut(s) 1277
DpnII GATC 1 cut(s) 1275
DraI TTTAAA 1 cut(s) 702
DriI GACNNNNNGTC 1 cut(s) 499
EaeI YGGCCR 3 cut(s) 198, 555, 757
EagI CGGCCG 1 cut(s) 757
Eam1104I CTCTTC 4 cut(s) 41, 121, 608, 950
Eam1105I GACNNNNNGTC 1 cut(s) 499
EarI CTCTTC 4 cut(s) 41, 121, 608, 950
EciI GGCGGA 2 cut(s) 270, 1098
EclXI CGGCCG 1 cut(s) 757
Eco130I CCWWGG 1 cut(s) 231
Eco47I GGWCC 3 cut(s) 594, 1135, 1449
Eco47III AGCGCT 1 cut(s) 769
Eco52I CGGCCG 1 cut(s) 757
Eco57I CTGAAG 2 cut(s) 1108, 1302
Eco91I GGTNACC 1 cut(s) 1186
EcoO65I GGTNACC 1 cut(s) 1186
EcoT14I CCWWGG 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 231
Esp3I CGTCTC 1 cut(s) 672
FaeI CATG 6 cut(s) 235, 292, 341, 556, 1411, 1528
FalI AAGNNNNNCTT 4 cut(s) 695, 727, 848, 880
FaqI GGGAC 1 cut(s) 773
FatI CATG 6 cut(s) 231, 288, 337, 552, 1407, 1524
FauI CCCGC 2 cut(s) 160, 989
FblI GTMKAC 1 cut(s) 474
Fnu4HI GCNGC 8 cut(s) 105, 141, 144, 558, 757, 760, 934, 1171
FokI GGATG 3 cut(s) 738, 894, 993
Fsp4HI GCNGC 8 cut(s) 105, 141, 144, 558, 757, 760, 934, 1171
FspBI CTAG 2 cut(s) 371, 1555
GlaI GCGC 5 cut(s) 375, 675, 769, 1323, 1530
GluI GCNGC 8 cut(s) 105, 141, 144, 558, 757, 760, 934, 1171
HaeII RGCGCY 1 cut(s) 771
HapII CCGG 7 cut(s) 87, 298, 511, 1112, 1133, 1203, 1334
HgaI GACGC 2 cut(s) 1168, 1219
HhaI GCGC 5 cut(s) 376, 676, 770, 1324, 1531
Hin1II CATG 6 cut(s) 235, 292, 341, 556, 1411, 1528
Hin6I GCGC 5 cut(s) 374, 674, 768, 1322, 1529
HinP1I GCGC 5 cut(s) 374, 674, 768, 1322, 1529
HincII GTYRAC 2 cut(s) 475, 1240
HindII GTYRAC 2 cut(s) 475, 1240
HindIII AAGCTT 1 cut(s) 709
HinfI GANTC 4 cut(s) 569, 1044, 1085, 1424
HpaII CCGG 7 cut(s) 87, 298, 511, 1112, 1133, 1203, 1334
Hpy188I TCNGA 7 cut(s) 307, 652, 774, 849, 915, 1144, 1158
Hpy188III TCNNGA 4 cut(s) 686, 790, 1133, 1408
Hpy99I CGWCG 6 cut(s) 354, 446, 500, 1162, 1211, 1548
HpyAV CCTTC 6 cut(s) 304, 771, 862, 872, 1020, 1132
HpyCH4III ACNGT 5 cut(s) 76, 421, 663, 683, 1186
HpyCH4IV ACGT 2 cut(s) 465, 525
HpyCH4V TGCA 2 cut(s) 638, 1493
HpyF10VI GCNNNNNNNGC 8 cut(s) 152, 756, 765, 981, 1328, 1354, 1386, 1535
HpyF3I CTNAG 7 cut(s) 251, 764, 771, 1079, 1353, 1515, 1550
HpySE526I ACGT 2 cut(s) 465, 525
Hsp92II CATG 6 cut(s) 235, 292, 341, 556, 1411, 1528
HspAI GCGC 5 cut(s) 374, 674, 768, 1322, 1529
Kpn2I TCCGGA 1 cut(s) 1132
KroI GCCGGC 1 cut(s) 1202
KroNI GCCGGC 1 cut(s) 1204
KspI CCGCGG 1 cut(s) 144
Kzo9I GATC 1 cut(s) 1275
LguI GCTCTTC 1 cut(s) 608
LmnI GCTCC 2 cut(s) 1336, 1543
LweI GCATC 2 cut(s) 610, 1465
MaeI CTAG 2 cut(s) 371, 1555
MaeII ACGT 2 cut(s) 465, 525
MaeIII GTNAC 8 cut(s) 172, 421, 521, 577, 1001, 1186, 1425, 1432
MalI GATC 1 cut(s) 1277
MbiI CCGCTC 1 cut(s) 756
MboI GATC 1 cut(s) 1275
MfeI CAATTG 2 cut(s) 387, 486
MlsI TGGCCA 1 cut(s) 200
MluCI AATT 3 cut(s) 387, 486, 896
MluNI TGGCCA 1 cut(s) 200
MlyI GAGTC 4 cut(s) 578, 1038, 1094, 1433
MmeI TCCRAC 3 cut(s) 675, 1181, 1530
Mox20I TGGCCA 1 cut(s) 200
MroI TCCGGA 1 cut(s) 1132
MroNI GCCGGC 1 cut(s) 1202
MroXI GAANNNNTTC 1 cut(s) 1295
MscI TGGCCA 1 cut(s) 200
MseI TTAA 3 cut(s) 701, 842, 1305
Msp20I TGGCCA 1 cut(s) 200
MspA1I CMGCKG 2 cut(s) 143, 155
MspI CCGG 7 cut(s) 87, 298, 511, 1112, 1133, 1203, 1334
MspR9I CCNGG 1 cut(s) 87
MunI CAATTG 2 cut(s) 387, 486
MvnI CGCG 4 cut(s) 143, 376, 676, 1531
MwoI GCNNNNNNNGC 8 cut(s) 152, 756, 765, 981, 1328, 1354, 1386, 1535
NaeI GCCGGC 1 cut(s) 1204
NciI CCSGG 1 cut(s) 87
NcoI CCATGG 1 cut(s) 231
NdeII GATC 1 cut(s) 1275
NgoMIV GCCGGC 1 cut(s) 1202
NlaIII CATG 6 cut(s) 235, 292, 341, 556, 1411, 1528
NlaIV GGNNCC 4 cut(s) 382, 595, 1332, 1450
NmeAIII GCCGAG 5 cut(s) 219, 225, 634, 1047, 1053
NmuCI GTSAC 6 cut(s) 172, 421, 521, 1001, 1186, 1425
NotI GCGGCCGC 1 cut(s) 757
PagI TCATGA 1 cut(s) 1407
PciSI GCTCTTC 1 cut(s) 608
PcsI WCGNNNNNNNCGW 3 cut(s) 471, 1080, 1470
PdiI GCCGGC 1 cut(s) 1204
PdmI GAANNNNTTC 1 cut(s) 1295
PkrI GCNGC 8 cut(s) 106, 142, 145, 559, 758, 761, 935, 1172
PleI GAGTC 4 cut(s) 577, 1038, 1093, 1432
PpsI GAGTC 4 cut(s) 577, 1038, 1093, 1432
PspEI GGTNACC 1 cut(s) 1186
PspN4I GGNNCC 4 cut(s) 382, 595, 1332, 1450
PspPI GGNCC 4 cut(s) 235, 594, 1135, 1449
RsaI GTAC 4 cut(s) 545, 863, 873, 1259
RsaNI GTAC 4 cut(s) 544, 862, 872, 1258
SacII CCGCGG 1 cut(s) 144
SalI GTCGAC 1 cut(s) 473
SapI GCTCTTC 1 cut(s) 608
SaqAI TTAA 3 cut(s) 701, 842, 1305
SatI GCNGC 8 cut(s) 105, 141, 144, 558, 757, 760, 934, 1171
Sau3AI GATC 1 cut(s) 1275
Sau96I GGNCC 4 cut(s) 235, 594, 1135, 1449
ScaI AGTACT 2 cut(s) 545, 863
SchI GAGTC 4 cut(s) 578, 1038, 1094, 1433
ScrFI CCNGG 1 cut(s) 87
SfaNI GCATC 2 cut(s) 610, 1465
Sfr303I CCGCGG 1 cut(s) 144
SgrBI CCGCGG 1 cut(s) 144
SinI GGWCC 3 cut(s) 594, 1135, 1449
SmlI CTYRAG 1 cut(s) 751
SmoI CTYRAG 1 cut(s) 751
Sse9I AATT 3 cut(s) 387, 486, 896
SspMI CTAG 2 cut(s) 371, 1555
StyD4I CCNGG 1 cut(s) 85
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 5 cut(s) 76, 421, 663, 683, 1186
TaiI ACGT 2 cut(s) 468, 528
TaqI TCGA 9 cut(s) 317, 349, 400, 474, 503, 540, 1088, 1395, 1464
TasI AATT 3 cut(s) 387, 486, 896
TatI WGTACW 3 cut(s) 543, 861, 1257
TauI GCSGC 8 cut(s) 107, 143, 146, 560, 759, 762, 936, 1173
Tru1I TTAA 3 cut(s) 701, 842, 1305
Tru9I TTAA 3 cut(s) 701, 842, 1305
TscAI CASTG 2 cut(s) 595, 1450
TseFI GTSAC 6 cut(s) 172, 421, 521, 1001, 1186, 1425
Tsp45I GTSAC 6 cut(s) 172, 421, 521, 1001, 1186, 1425
TspDTI ATGAA 1 cut(s) 1513
TspGWI ACGGA 2 cut(s) 596, 1451
TspRI CASTG 2 cut(s) 595, 1450
VpaK11BI GGWCC 3 cut(s) 594, 1135, 1449
XcmI CCANNNNNNNNNTGG 3 cut(s) 193, 391, 1022
XmiI GTMKAC 1 cut(s) 474
XmnI GAANNNNTTC 1 cut(s) 1295
XspI CTAG 2 cut(s) 371, 1555
ZrmI AGTACT 2 cut(s) 545, 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.