FvH4_5g08730

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014930
Physical Location & Seq
Forward (+)
5008534 .. 5010495
1962 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g08730.t1

Sequence Viewer

Length: 1047 bp
ATGGATATCATTAACACACTACTGAACATTGTGCTTCCTCCCATCGGTCTCACCTTGCTGCTCTTCTTTCTTCCACCATATCTGTTTCTCAAGTTCCTCCTTTCGATCATAAGGCCTCTGTTTTGCGAAAACGTGGCCGGAAAAGTCATACTCATAACCGGAGCATCCTCCGGCATAGGCGAGCATCTGGCATACGAGTACGCTAGCAGAGGTGCTTGTCTAGCTCTTGTTGCCAGAAGAGAACATCGACTCCAACAAGTTGCCAACAGAGCCGTGTCGATTGGCTCACCAGACGTTCTCATCATTCCTGCAGATGTTTCCAAGGTAGAAGATTGTAAGCGCTTTGTTGATGCGACAGTGAATCACTTTGGACGCTTGGATCACCTAGTGAATAATGCTGGGATTGCTCCCATCTGCATGTTTGAAGAAACACCTGATGTTACTAAACTAGCACCAGCCATGGACGTCAACTTTTGGGGTTCAGTTTACAGCTCTTATTTCGCTATTCCTCACCTTAAACAGAGCCAAGGGAGGATTATAGGGATCTCATCTGCTGCTGGATGGTTGCGCACACCACGTCTAAGCATGTATAGTGCTAGCAAAACAGCAGTGATAAGCTTTTATGAGACTTTGAGAGTCGAAACTGGGGATGAAGTTGGAATAACACTTGTGACTCCAGGGCTAGTTGAATCAGAAATGACTCAAGGAAAGTTCCTGAACAAGGAAGGCCGATTGGTATTAGATCAAGAACTGAGAGATGCTGAAATGAGCTTAATGCCTGTACTGCCTGTCAAAGAAGCTGCGGAAGCAATTGTGGACGGTGCCTGCGAAGGAGTAAAATACTTGACAGTACCAGCTTGGGTTAGGCAGTCAATTTACTGGAAAGTGTTTTCACCTGAGACACTGGAGTGGTGTAATCGGATTCTACTAATGAGCCGTTCAGGAGACGAGACAAATACACTGAGTAAGAAGATCCTGGACATTTCTGGCTTAAAGGATTTGGTGTATCCAGACACAATTCAATCTCCTCAGATCAGAGAACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

349

Amino Acids

38.52

Weight (kDa)

5.76

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 48 - 238 3e-47 short chain dehydrogenase
KR PF08659 50 - 212 8.1e-08 KR domain
adh_short_C2 PF13561 54 - 236 4.1e-30 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014930)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50770
fragaria_vesca FvH4_5g08730
malus_domestica MD14G1152800.v1.1
prunus_persica Prupe.5G147800_v2.0.a1
pyrus_communis pycom14g12720 pycom14g12730
rosa_chinensis RchiOBHm_Chr7g0189551
rosa_laevigata RLG00000004601
rosa_multiflora Rmu_sc0001924.1_g000012
rosa_roxburghii Rroxscaffold_3G00265310
rosa_rugosa Rorug06G0498900
rosa_samantha Rh7AG103900 Rh7BG106600 Rh7CG108700 Rh7DG106000
rosa_wichuraiana Rw7G008970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 468
Acc16I TGCGCA 1 cut(s) 569
AccB1I GGYRCC 1 cut(s) 821
AciI CCGC 1 cut(s) 803
AclWI GGATC 3 cut(s) 387, 551, 967
AcoI YGGCCR 1 cut(s) 135
AcyI GRCGYC 1 cut(s) 465
AdeI CACNNNGTG 1 cut(s) 388
AfaI GTAC 3 cut(s) 200, 783, 852
AfeI AGCGCT 1 cut(s) 341
AfiI CCNNNNNNNGG 2 cut(s) 44, 721
AgsI TTSAA 3 cut(s) 425, 689, 1022
AjiI CACGTC 1 cut(s) 578
AjnI CCWGG 2 cut(s) 676, 975
AleI CACNNNNGTG 1 cut(s) 907
AloI GAACNNNNNNTCC 2 cut(s) 234, 266
AluBI AGCT 6 cut(s) 224, 492, 618, 771, 800, 857
AluI AGCT 6 cut(s) 224, 492, 618, 771, 800, 857
Alw26I GTCTC 5 cut(s) 53, 620, 893, 939, 944
AlwI GGATC 3 cut(s) 387, 551, 967
Aor51HI AGCGCT 1 cut(s) 341
AoxI GGCC 3 cut(s) 113, 135, 727
ApeKI GCWGC 3 cut(s) 58, 554, 800
AspLEI GCGC 2 cut(s) 342, 570
AsuHPI GGTGA 5 cut(s) 43, 279, 374, 503, 885
AsuNHI GCTAGC 2 cut(s) 203, 596
BanI GGYRCC 1 cut(s) 821
BbvI GCAGC 3 cut(s) 45, 541, 787
BccI CCATC 3 cut(s) 50, 419, 555
BceAI ACGGC 2 cut(s) 257, 921
BciT130I CCWGG 2 cut(s) 678, 977
BciVI GTATCC 1 cut(s) 1017
BcoDI GTCTC 5 cut(s) 53, 620, 893, 939, 944
BfaI CTAG 6 cut(s) 204, 221, 386, 449, 597, 683
BfmI CTRYAG 1 cut(s) 309
BfoI RGCGCY 1 cut(s) 343
BfuI GTATCC 1 cut(s) 1017
BisI GCNGC 3 cut(s) 59, 555, 801
BlsI GCNGC 3 cut(s) 60, 556, 802
Bme1390I CCNGG 2 cut(s) 678, 977
BmgBI CACGTC 1 cut(s) 578
BmiI GGNNCC 1 cut(s) 823
BmrFI CCNGG 2 cut(s) 678, 977
BmrI ACTGGG 1 cut(s) 654
BmsI GCATC 4 cut(s) 173, 193, 340, 748
BmtI GCTAGC 2 cut(s) 207, 600
BmuI ACTGGG 1 cut(s) 654
BpmI CTGGAG 2 cut(s) 660, 926
BpuEI CTTGAG 2 cut(s) 74, 687
BsaHI GRCGYC 1 cut(s) 465
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 4 cut(s) 321, 459, 526, 677
BsaWI WCCGGW 1 cut(s) 158
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 721
Bse1I ACTGG 3 cut(s) 649, 884, 909
BseBI CCWGG 2 cut(s) 678, 977
BseDI CCNNGG 4 cut(s) 321, 459, 526, 677
BseGI GGATG 3 cut(s) 164, 566, 655
BseLI CCNNNNNNNGG 2 cut(s) 44, 721
BseMII CTCAG 4 cut(s) 743, 888, 953, 1043
BseNI ACTGG 3 cut(s) 649, 884, 909
BseRI GAGGAG 1 cut(s) 1017
BseXI GCAGC 3 cut(s) 45, 541, 787
BseYI CCCAGC 1 cut(s) 398
BshFI GGCC 3 cut(s) 115, 137, 729
BshNI GGYRCC 1 cut(s) 821
BsiSI CCGG 3 cut(s) 138, 159, 171
BslI CCNNNNNNNGG 2 cut(s) 44, 721
BsmAI GTCTC 5 cut(s) 53, 620, 893, 939, 944
BsmBI CGTCTC 1 cut(s) 939
BsnI GGCC 3 cut(s) 115, 137, 729
Bso31I GGTCTC 1 cut(s) 53
Bsp143I GATC 6 cut(s) 105, 379, 543, 742, 972, 1032
Bsp19I CCATGG 1 cut(s) 459
BspACI CCGC 1 cut(s) 803
BspANI GGCC 3 cut(s) 115, 137, 729
BspCNI CTCAG 4 cut(s) 744, 889, 954, 1042
BspLI GGNNCC 1 cut(s) 823
BspMAI CTGCAG 1 cut(s) 313
BspOI GCTAGC 2 cut(s) 207, 600
BspPI GGATC 3 cut(s) 387, 551, 967
BspQI GCTCTTC 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 821
BspTNI GGTCTC 1 cut(s) 53
BsrI ACTGG 3 cut(s) 649, 884, 909
BssECI CCNNGG 4 cut(s) 321, 459, 526, 677
BssMI GATC 6 cut(s) 105, 379, 543, 742, 972, 1032
BssNI GRCGYC 1 cut(s) 465
BssT1I CCWWGG 3 cut(s) 321, 459, 526
Bst2UI CCWGG 2 cut(s) 678, 977
Bst4CI ACNGT 3 cut(s) 358, 821, 850
Bst6I CTCTTC 2 cut(s) 68, 232
BstACI GRCGYC 1 cut(s) 465
BstC8I GCNNGC 4 cut(s) 182, 205, 598, 826
BstDEI CTNAG 5 cut(s) 581, 752, 897, 962, 1029
BstDSI CCRYGG 1 cut(s) 459
BstENI CCTNNNNNAGG 1 cut(s) 719
BstF5I GGATG 3 cut(s) 164, 566, 655
BstH2I RGCGCY 1 cut(s) 343
BstHHI GCGC 2 cut(s) 342, 570
BstKTI GATC 6 cut(s) 108, 382, 546, 745, 975, 1035
BstMAI GTCTC 5 cut(s) 53, 620, 893, 939, 944
BstMBI GATC 6 cut(s) 105, 379, 543, 742, 972, 1032
BstMWI GCNNNNNNNGC 6 cut(s) 221, 230, 269, 404, 784, 806
BstNI CCWGG 2 cut(s) 678, 977
BstNSI RCATGY 2 cut(s) 421, 589
BstSCI CCNGG 2 cut(s) 676, 975
BstSFI CTRYAG 1 cut(s) 309
BstV1I GCAGC 3 cut(s) 45, 541, 787
BstX2I RGATCY 2 cut(s) 543, 972
BstYI RGATCY 2 cut(s) 543, 972
BsuI GTATCC 1 cut(s) 1017
BsuRI GGCC 3 cut(s) 115, 137, 729
BtgI CCRYGG 1 cut(s) 459
BtrI CACGTC 1 cut(s) 578
BtsCI GGATG 3 cut(s) 164, 566, 655
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 5 cut(s) 363, 615, 902, 959, 1042
Cac8I GCNNGC 4 cut(s) 182, 205, 598, 826
CfoI GCGC 2 cut(s) 342, 570
CseI GACGC 1 cut(s) 381
Csp6I GTAC 3 cut(s) 199, 782, 851
CviAII CATG 3 cut(s) 418, 460, 586
CviQI GTAC 3 cut(s) 199, 782, 851
DdeI CTNAG 5 cut(s) 581, 752, 897, 962, 1029
DpnI GATC 6 cut(s) 107, 381, 545, 744, 974, 1034
DpnII GATC 6 cut(s) 105, 379, 543, 742, 972, 1032
DraIII CACNNNGTG 1 cut(s) 388
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 68, 232
EarI CTCTTC 2 cut(s) 68, 232
Eco130I CCWWGG 3 cut(s) 321, 459, 526
Eco147I AGGCCT 1 cut(s) 115
Eco31I GGTCTC 1 cut(s) 53
Eco32I GATATC 1 cut(s) 7
Eco47III AGCGCT 1 cut(s) 341
EcoNI CCTNNNNNAGG 1 cut(s) 719
EcoRII CCWGG 2 cut(s) 676, 975
EcoRV GATATC 1 cut(s) 7
EcoT14I CCWWGG 3 cut(s) 321, 459, 526
ErhI CCWWGG 3 cut(s) 321, 459, 526
Esp3I CGTCTC 1 cut(s) 939
FaeI CATG 3 cut(s) 421, 463, 589
FatI CATG 3 cut(s) 417, 459, 585
Fnu4HI GCNGC 3 cut(s) 59, 555, 801
FokI GGATG 3 cut(s) 151, 573, 662
Fsp4HI GCNGC 3 cut(s) 59, 555, 801
FspBI CTAG 6 cut(s) 204, 221, 386, 449, 597, 683
FspI TGCGCA 1 cut(s) 569
GlaI GCGC 2 cut(s) 341, 569
GluI GCNGC 3 cut(s) 59, 555, 801
GsaI CCCAGC 1 cut(s) 402
GsuI CTGGAG 2 cut(s) 660, 926
HaeII RGCGCY 1 cut(s) 343
HaeIII GGCC 3 cut(s) 115, 137, 729
HapII CCGG 3 cut(s) 138, 159, 171
HgaI GACGC 1 cut(s) 381
HhaI GCGC 2 cut(s) 342, 570
Hin1I GRCGYC 1 cut(s) 465
Hin1II CATG 3 cut(s) 421, 463, 589
Hin6I GCGC 2 cut(s) 340, 568
HinP1I GCGC 2 cut(s) 340, 568
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HindIII AAGCTT 1 cut(s) 616
HinfI GANTC 7 cut(s) 249, 361, 636, 673, 689, 700, 922
HpaII CCGG 3 cut(s) 138, 159, 171
HphI GGTGA 5 cut(s) 43, 279, 374, 503, 885
Hpy166II GTNNAC 3 cut(s) 469, 487, 817
Hpy188I TCNGA 4 cut(s) 694, 921, 1032, 1037
Hpy188III TCNNGA 4 cut(s) 715, 746, 942, 1010
Hpy8I GTNNAC 3 cut(s) 469, 487, 817
HpyAV CCTTC 2 cut(s) 719, 824
HpyCH4III ACNGT 3 cut(s) 358, 821, 850
HpyCH4IV ACGT 4 cut(s) 132, 294, 465, 577
HpyCH4V TGCA 2 cut(s) 311, 417
HpyF10VI GCNNNNNNNGC 6 cut(s) 221, 230, 269, 404, 784, 806
HpyF3I CTNAG 5 cut(s) 581, 752, 897, 962, 1029
HpySE526I ACGT 4 cut(s) 132, 294, 465, 577
Hsp92I GRCGYC 1 cut(s) 465
Hsp92II CATG 3 cut(s) 421, 463, 589
HspAI GCGC 2 cut(s) 340, 568
Kzo9I GATC 6 cut(s) 105, 379, 543, 742, 972, 1032
LguI GCTCTTC 1 cut(s) 68
LmnI GCTCC 2 cut(s) 161, 412
Lsp1109I GCAGC 3 cut(s) 45, 541, 787
LweI GCATC 4 cut(s) 173, 193, 340, 748
MaeI CTAG 6 cut(s) 204, 221, 386, 449, 597, 683
MaeII ACGT 4 cut(s) 132, 294, 465, 577
MaeIII GTNAC 2 cut(s) 439, 670
MalI GATC 6 cut(s) 107, 381, 545, 744, 974, 1034
MboI GATC 6 cut(s) 105, 379, 543, 742, 972, 1032
MboII GAAGA 6 cut(s) 55, 62, 249, 341, 437, 982
MfeI CAATTG 1 cut(s) 810
MflI RGATCY 2 cut(s) 543, 972
MluCI AATT 3 cut(s) 810, 873, 1017
MlyI GAGTC 4 cut(s) 243, 645, 667, 694
MmeI TCCRAC 2 cut(s) 277, 637
MnlI CCTC 8 cut(s) 48, 107, 126, 178, 203, 519, 525, 1038
MseI TTAA 4 cut(s) 12, 516, 773, 992
MslI CAYNNNNRTG 2 cut(s) 416, 907
MspI CCGG 3 cut(s) 138, 159, 171
MspR9I CCNGG 2 cut(s) 678, 977
MunI CAATTG 1 cut(s) 810
MvaI CCWGG 2 cut(s) 678, 977
MwoI GCNNNNNNNGC 6 cut(s) 221, 230, 269, 404, 784, 806
NcoI CCATGG 1 cut(s) 459
NdeII GATC 6 cut(s) 105, 379, 543, 742, 972, 1032
NheI GCTAGC 2 cut(s) 203, 596
NlaIII CATG 3 cut(s) 421, 463, 589
NlaIV GGNNCC 1 cut(s) 823
NmuCI GTSAC 1 cut(s) 670
NsbI TGCGCA 1 cut(s) 569
NspI RCATGY 2 cut(s) 421, 589
OliI CACNNNNGTG 1 cut(s) 907
PceI AGGCCT 1 cut(s) 115
PciSI GCTCTTC 1 cut(s) 68
PcsI WCGNNNNNNNCGW 1 cut(s) 825
PfeI GAWTC 3 cut(s) 361, 689, 922
PfoI TCCNGGA 1 cut(s) 975
PkrI GCNGC 3 cut(s) 60, 556, 802
PleI GAGTC 4 cut(s) 243, 644, 667, 694
PpsI GAGTC 4 cut(s) 243, 644, 667, 694
Psp6I CCWGG 2 cut(s) 676, 975
PspFI CCCAGC 1 cut(s) 398
PspGI CCWGG 2 cut(s) 676, 975
PspN4I GGNNCC 1 cut(s) 823
PstI CTGCAG 1 cut(s) 313
PsuI RGATCY 2 cut(s) 543, 972
RsaI GTAC 3 cut(s) 200, 783, 852
RsaNI GTAC 3 cut(s) 199, 782, 851
RseI CAYNNNNRTG 2 cut(s) 416, 907
SapI GCTCTTC 1 cut(s) 68
SaqAI TTAA 4 cut(s) 12, 516, 773, 992
SatI GCNGC 3 cut(s) 59, 555, 801
Sau3AI GATC 6 cut(s) 105, 379, 543, 742, 972, 1032
SchI GAGTC 4 cut(s) 243, 645, 667, 694
ScrFI CCNGG 2 cut(s) 678, 977
SfaNI GCATC 4 cut(s) 173, 193, 340, 748
SfcI CTRYAG 1 cut(s) 309
SmiMI CAYNNNNRTG 2 cut(s) 416, 907
SmlI CTYRAG 2 cut(s) 89, 702
SmoI CTYRAG 2 cut(s) 89, 702
Sse9I AATT 3 cut(s) 810, 873, 1017
SseBI AGGCCT 1 cut(s) 115
SsiI CCGC 1 cut(s) 803
SspMI CTAG 6 cut(s) 204, 221, 386, 449, 597, 683
StuI AGGCCT 1 cut(s) 115
StyD4I CCNGG 2 cut(s) 676, 975
StyI CCWWGG 3 cut(s) 321, 459, 526
TaaI ACNGT 3 cut(s) 358, 821, 850
TaiI ACGT 4 cut(s) 135, 297, 468, 580
TaqI TCGA 4 cut(s) 104, 247, 278, 639
TaqII GACCGA 1 cut(s) 35
TasI AATT 3 cut(s) 810, 873, 1017
TatI WGTACW 1 cut(s) 781
TfiI GAWTC 3 cut(s) 361, 689, 922
Tru1I TTAA 4 cut(s) 12, 516, 773, 992
Tru9I TTAA 4 cut(s) 12, 516, 773, 992
TscAI CASTG 4 cut(s) 363, 615, 909, 966
TseFI GTSAC 1 cut(s) 670
TseI GCWGC 3 cut(s) 58, 554, 800
Tsp45I GTSAC 1 cut(s) 670
TspDTI ATGAA 1 cut(s) 666
TspRI CASTG 4 cut(s) 363, 615, 909, 966
XagI CCTNNNNNAGG 1 cut(s) 719
XceI RCATGY 2 cut(s) 421, 589
XspI CTAG 6 cut(s) 204, 221, 386, 449, 597, 683
ZraI GACGTC 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.