Prupe.5G147800_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0014930
Physical Location & Seq
Forward (+)
13541301 .. 13544521
3221 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G147800.1

Sequence Viewer

Length: 1077 bp
ATGGATGATATCATTAACAAGGTACTCAACATTATAATTCCTCCCATATCCCTCACCTTCTTCCTCTTCCTTCTGCCACTCTATCTCTTTTACAAGTTCCTCCTCTCCGCCGTACGATCTGTTTTTAGTGAAGATGTGGCCGGAAAAGTCGTCCTCATCACTGGAGCTTCCTCCGGCATAGGAGAGCATATGGCATATGAGTATGCTAGAAGAGGAGCTTGCCTAGCTCTTGTTGCCAGAAGAGAAAACCTGCTCCAATCTGTGGCTAGCAGAGCCATGTCCATTGGCTCCCCAGATATTCTCGTAATCCCTGCAGATGTTTCAAAGGTGGAAAATTGTAGGCGCTTTGTCGATGTAGCAGTGAACCACTTTGGGCGTTTGGATCACCTAGTCAACAATGCTGGGATTACTCCAGACACAAACTTTTGGGGTTCAGTATATGGCACCTACTTTGCCATTCCACACCTTAAAAGGAGCAGAGGGAAGATCGTGGGGATCGCTTCCTCTGCCGGATGGTTGCGTGTGCCACGACTAAGCTTGTATGGTGCTACCAAATCAGCAGTGATAAGCTTCTATGAGACGCTGAGAGTAGAAATTGGGAGAGAAGTTGGAATAACAATTGTGACTCCAGGTTTGGTTGAATCAGAAATGACCAAAGGCAAATTCTTATCCAAGGAAGGCCAACTGGTATTGGATCAACAATTGAGAGATGTTGAAGTAAGCATAATGCCAATACTGCCTGTCAAGGAGGCTGCCAAATCAATCGTGGACAGCGCATGCCGGGGAGAAAATTACTTGACAGTACCAGCTTGGGTTTGGCATTCATTTTACTGGAAGGTGTTTTTCCCAGAGTTACTGGACTGGTCTAACCGTATGTTACTGATGAGCAATGGGAGCGGTGGCGAGAGGGATACAATAAACGTCATCAATGGCTTCCACACTAACGGCGGTACCACTCTGCGGCATTTCAATGGTGTCGACGACGTCGATTCTGTACTCGTCGGGAAACTCTCCGAGCAACAACCCCATCACCTCCATAGGAACGCCAGCTCTTGCTATCAAATTTCATACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

359

Amino Acids

39.72

Weight (kDa)

8.27

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014930)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50770
fragaria_vesca FvH4_5g08730
malus_domestica MD14G1152800.v1.1
prunus_persica Prupe.5G147800_v2.0.a1
pyrus_communis pycom14g12720 pycom14g12730
rosa_chinensis RchiOBHm_Chr7g0189551
rosa_laevigata RLG00000004601
rosa_multiflora Rmu_sc0001924.1_g000012
rosa_roxburghii Rroxscaffold_3G00265310
rosa_rugosa Rorug06G0498900
rosa_samantha Rh7AG103900 Rh7BG106600 Rh7CG108700 Rh7DG106000
rosa_wichuraiana Rw7G008970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 35
AatII GACGTC 1 cut(s) 987
Acc36I ACCTGC 1 cut(s) 258
Acc65I GGTACC 1 cut(s) 950
AccB1I GGYRCC 2 cut(s) 443, 950
AccB7I CCANNNNNTGG 1 cut(s) 262
AccBSI CCGCTC 1 cut(s) 897
AccI GTMKAC 1 cut(s) 978
AciI CCGC 4 cut(s) 108, 897, 948, 961
AclWI GGATC 3 cut(s) 390, 503, 702
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 2 cut(s) 662, 1062
AcyI GRCGYC 1 cut(s) 984
AfaI GTAC 5 cut(s) 24, 114, 804, 952, 996
AfiI CCNNNNNNNGG 2 cut(s) 262, 960
AgsI TTSAA 4 cut(s) 324, 641, 716, 970
AjnI CCWGG 1 cut(s) 628
AjuI GAANNNNNNNTTGG 2 cut(s) 647, 679
AluBI AGCT 7 cut(s) 167, 218, 227, 537, 570, 809, 1050
AluI AGCT 7 cut(s) 167, 218, 227, 537, 570, 809, 1050
Alw26I GTCTC 1 cut(s) 572
AlwI GGATC 3 cut(s) 390, 503, 702
AoxI GGCC 2 cut(s) 138, 679
ApeKI GCWGC 1 cut(s) 752
ApoI RAATTY 2 cut(s) 662, 1062
ArsI GACNNNNNNTTYG 2 cut(s) 616, 648
Asp718I GGTACC 1 cut(s) 950
AspLEI GCGC 2 cut(s) 345, 776
AsuC2I CCSGG 1 cut(s) 782
AsuHPI GGTGA 3 cut(s) 46, 377, 1022
AsuNHI GCTAGC 1 cut(s) 266
BaeI ACNNNNGTAYC 2 cut(s) 934, 967
BanI GGYRCC 2 cut(s) 443, 950
BbvI GCAGC 1 cut(s) 739
BccI CCATC 2 cut(s) 507, 1035
BceAI ACGGC 2 cut(s) 95, 961
BciT130I CCWGG 1 cut(s) 630
BciVI GTATCC 1 cut(s) 904
BcnI CCSGG 1 cut(s) 782
BcoDI GTCTC 1 cut(s) 572
BfaI CTAG 4 cut(s) 207, 224, 267, 389
BfmI CTRYAG 1 cut(s) 312
BfoI RGCGCY 1 cut(s) 346
BfuAI ACCTGC 1 cut(s) 258
BfuI GTATCC 1 cut(s) 904
BisI GCNGC 2 cut(s) 753, 962
BlsI GCNGC 2 cut(s) 754, 963
Bme1390I CCNGG 2 cut(s) 630, 782
BmiI GGNNCC 3 cut(s) 289, 445, 952
BmrFI CCNGG 2 cut(s) 630, 782
BmtI GCTAGC 1 cut(s) 270
BpmI CTGGAG 3 cut(s) 183, 396, 612
BpuMI CCSGG 1 cut(s) 782
BsaHI GRCGYC 1 cut(s) 984
BsaJI CCNNGG 2 cut(s) 672, 781
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 960
Bse1I ACTGG 5 cut(s) 166, 690, 836, 861, 866
Bse3DI GCAATG 1 cut(s) 895
BseBI CCWGG 1 cut(s) 630
BseDI CCNNGG 2 cut(s) 672, 781
BseGI GGATG 2 cut(s) 10, 518
BseLI CCNNNNNNNGG 2 cut(s) 262, 960
BseMI GCAATG 1 cut(s) 895
BseMII CTCAG 1 cut(s) 575
BseNI ACTGG 5 cut(s) 166, 690, 836, 861, 866
BseRI GAGGAG 2 cut(s) 92, 228
BseXI GCAGC 1 cut(s) 739
BseYI CCCAGC 1 cut(s) 401
BshFI GGCC 2 cut(s) 140, 681
BshNI GGYRCC 2 cut(s) 443, 950
BsiSI CCGG 4 cut(s) 141, 174, 510, 781
BsiWI CGTACG 1 cut(s) 112
BslI CCNNNNNNNGG 2 cut(s) 262, 960
BsmAI GTCTC 1 cut(s) 572
BsmBI CGTCTC 1 cut(s) 572
BsmI GAATGC 1 cut(s) 820
BsnI GGCC 2 cut(s) 140, 681
Bsp143I GATC 5 cut(s) 116, 382, 486, 495, 694
BspACI CCGC 4 cut(s) 108, 897, 948, 961
BspANI GGCC 2 cut(s) 140, 681
BspCNI CTCAG 1 cut(s) 576
BspLI GGNNCC 3 cut(s) 289, 445, 952
BspMAI CTGCAG 1 cut(s) 316
BspMI ACCTGC 1 cut(s) 258
BspOI GCTAGC 1 cut(s) 270
BspPI GGATC 3 cut(s) 390, 503, 702
BspT107I GGYRCC 2 cut(s) 443, 950
BsrBI CCGCTC 1 cut(s) 897
BsrDI GCAATG 1 cut(s) 895
BsrI ACTGG 5 cut(s) 166, 690, 836, 861, 866
BssECI CCNNGG 2 cut(s) 672, 781
BssMI GATC 5 cut(s) 116, 382, 486, 495, 694
BssNI GRCGYC 1 cut(s) 984
BssT1I CCWWGG 1 cut(s) 672
Bst2UI CCWGG 1 cut(s) 630
Bst4CI ACNGT 2 cut(s) 802, 872
Bst6I CTCTTC 3 cut(s) 71, 205, 235
BstACI GRCGYC 1 cut(s) 984
BstC8I GCNNGC 4 cut(s) 220, 268, 778, 1048
BstDEI CTNAG 2 cut(s) 533, 584
BstF5I GGATG 2 cut(s) 10, 518
BstH2I RGCGCY 1 cut(s) 346
BstHHI GCGC 2 cut(s) 345, 776
BstKTI GATC 5 cut(s) 119, 385, 489, 498, 697
BstMAI GTCTC 1 cut(s) 572
BstMBI GATC 5 cut(s) 116, 382, 486, 495, 694
BstMWI GCNNNNNNNGC 6 cut(s) 224, 233, 272, 506, 736, 894
BstNI CCWGG 1 cut(s) 630
BstNSI RCATGY 1 cut(s) 780
BstSCI CCNGG 2 cut(s) 628, 780
BstSFI CTRYAG 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 739
BsuI GTATCC 1 cut(s) 904
BsuRI GGCC 2 cut(s) 140, 681
BtsCI GGATG 2 cut(s) 10, 518
BtsI GCAGTG 2 cut(s) 366, 567
BtsIMutI CAGTG 3 cut(s) 159, 366, 567
BveI ACCTGC 1 cut(s) 258
Cac8I GCNNGC 4 cut(s) 220, 268, 778, 1048
CfoI GCGC 2 cut(s) 345, 776
CseI GACGC 1 cut(s) 589
Csp6I GTAC 5 cut(s) 23, 113, 803, 951, 995
CviAII CATG 2 cut(s) 277, 777
CviQI GTAC 5 cut(s) 23, 113, 803, 951, 995
DdeI CTNAG 2 cut(s) 533, 584
DpnI GATC 5 cut(s) 118, 384, 488, 497, 696
DpnII GATC 5 cut(s) 116, 382, 486, 495, 694
EaeI YGGCCR 1 cut(s) 138
Eam1104I CTCTTC 3 cut(s) 71, 205, 235
EarI CTCTTC 3 cut(s) 71, 205, 235
EciI GGCGGA 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 672
Eco32I GATATC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 628
EcoRV GATATC 1 cut(s) 10
EcoT14I CCWWGG 1 cut(s) 672
ErhI CCWWGG 1 cut(s) 672
Esp3I CGTCTC 1 cut(s) 572
FaeI CATG 2 cut(s) 280, 780
FalI AAGNNNNNCTT 2 cut(s) 202, 234
FatI CATG 2 cut(s) 276, 776
FauNDI CATATG 2 cut(s) 189, 196
FblI GTMKAC 1 cut(s) 978
Fnu4HI GCNGC 2 cut(s) 753, 962
FokI GGATG 2 cut(s) 17, 525
Fsp4HI GCNGC 2 cut(s) 753, 962
FspBI CTAG 4 cut(s) 207, 224, 267, 389
GlaI GCGC 2 cut(s) 344, 775
GluI GCNGC 2 cut(s) 753, 962
GsaI CCCAGC 1 cut(s) 405
GsuI CTGGAG 3 cut(s) 183, 396, 612
HaeII RGCGCY 1 cut(s) 346
HaeIII GGCC 2 cut(s) 140, 681
HapII CCGG 4 cut(s) 141, 174, 510, 781
HgaI GACGC 1 cut(s) 589
HhaI GCGC 2 cut(s) 345, 776
Hin1I GRCGYC 1 cut(s) 984
Hin1II CATG 2 cut(s) 280, 780
Hin6I GCGC 2 cut(s) 343, 774
HinP1I GCGC 2 cut(s) 343, 774
HincII GTYRAC 2 cut(s) 394, 979
HindII GTYRAC 2 cut(s) 394, 979
HindIII AAGCTT 2 cut(s) 535, 568
HinfI GANTC 3 cut(s) 625, 641, 989
HpaII CCGG 4 cut(s) 141, 174, 510, 781
HphI GGTGA 3 cut(s) 46, 377, 1022
Hpy166II GTNNAC 4 cut(s) 364, 394, 769, 979
Hpy188I TCNGA 2 cut(s) 646, 1015
Hpy188III TCNNGA 2 cut(s) 413, 1003
Hpy8I GTNNAC 4 cut(s) 364, 394, 769, 979
Hpy99I CGWCG 4 cut(s) 983, 986, 989, 1004
HpyAV CCTTC 4 cut(s) 67, 80, 671, 829
HpyCH4III ACNGT 2 cut(s) 802, 872
HpyCH4IV ACGT 2 cut(s) 921, 984
HpyCH4V TGCA 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 6 cut(s) 224, 233, 272, 506, 736, 894
HpyF3I CTNAG 2 cut(s) 533, 584
HpySE526I ACGT 2 cut(s) 921, 984
Hsp92I GRCGYC 1 cut(s) 984
Hsp92II CATG 2 cut(s) 280, 780
HspAI GCGC 2 cut(s) 343, 774
KpnI GGTACC 1 cut(s) 954
Kzo9I GATC 5 cut(s) 116, 382, 486, 495, 694
LmnI GCTCC 6 cut(s) 164, 215, 258, 293, 474, 894
Lsp1109I GCAGC 1 cut(s) 739
MaeI CTAG 4 cut(s) 207, 224, 267, 389
MaeII ACGT 2 cut(s) 921, 984
MaeIII GTNAC 3 cut(s) 622, 852, 876
MalI GATC 5 cut(s) 118, 384, 488, 497, 696
MbiI CCGCTC 1 cut(s) 897
MboI GATC 5 cut(s) 116, 382, 486, 495, 694
MboII GAAGA 6 cut(s) 52, 58, 143, 222, 252, 496
MfeI CAATTG 2 cut(s) 618, 701
MluCI AATT 9 cut(s) 36, 334, 594, 618, 662, 701, 790, 1062, 1072
MlyI GAGTC 1 cut(s) 619
MmeI TCCRAC 1 cut(s) 589
MseI TTAA 3 cut(s) 15, 468, 1075
MslI CAYNNNNRTG 1 cut(s) 969
MspI CCGG 4 cut(s) 141, 174, 510, 781
MspR9I CCNGG 2 cut(s) 630, 782
MunI CAATTG 2 cut(s) 618, 701
Mva1269I GAATGC 1 cut(s) 820
MvaI CCWGG 1 cut(s) 630
MwoI GCNNNNNNNGC 6 cut(s) 224, 233, 272, 506, 736, 894
NciI CCSGG 1 cut(s) 782
NdeI CATATG 2 cut(s) 189, 196
NdeII GATC 5 cut(s) 116, 382, 486, 495, 694
NheI GCTAGC 1 cut(s) 266
NlaIII CATG 2 cut(s) 280, 780
NlaIV GGNNCC 3 cut(s) 289, 445, 952
NmuCI GTSAC 1 cut(s) 622
NspI RCATGY 1 cut(s) 780
PaeI GCATGC 1 cut(s) 780
PcsI WCGNNNNNNNCGW 1 cut(s) 984
PctI GAATGC 1 cut(s) 820
PfeI GAWTC 2 cut(s) 641, 989
Pfl23II CGTACG 1 cut(s) 112
PflFI GACNNNGTC 1 cut(s) 983
PflMI CCANNNNNTGG 1 cut(s) 262
PkrI GCNGC 2 cut(s) 754, 963
PleI GAGTC 1 cut(s) 619
PpsI GAGTC 1 cut(s) 619
PsiI TTATAA 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 628
PspFI CCCAGC 1 cut(s) 401
PspGI CCWGG 1 cut(s) 628
PspLI CGTACG 1 cut(s) 112
PspN4I GGNNCC 3 cut(s) 289, 445, 952
PstI CTGCAG 1 cut(s) 316
PsyI GACNNNGTC 1 cut(s) 983
RsaI GTAC 5 cut(s) 24, 114, 804, 952, 996
RsaNI GTAC 5 cut(s) 23, 113, 803, 951, 995
RseI CAYNNNNRTG 1 cut(s) 969
SalI GTCGAC 1 cut(s) 977
SaqAI TTAA 3 cut(s) 15, 468, 1075
SatI GCNGC 2 cut(s) 753, 962
Sau3AI GATC 5 cut(s) 116, 382, 486, 495, 694
SchI GAGTC 1 cut(s) 619
ScrFI CCNGG 2 cut(s) 630, 782
SfcI CTRYAG 1 cut(s) 312
SmiMI CAYNNNNRTG 1 cut(s) 969
SphI GCATGC 1 cut(s) 780
Sse9I AATT 9 cut(s) 36, 334, 594, 618, 662, 701, 790, 1062, 1072
SsiI CCGC 4 cut(s) 108, 897, 948, 961
SspMI CTAG 4 cut(s) 207, 224, 267, 389
StyD4I CCNGG 2 cut(s) 628, 780
StyI CCWWGG 1 cut(s) 672
TaaI ACNGT 2 cut(s) 802, 872
TaiI ACGT 2 cut(s) 924, 987
TaqI TCGA 3 cut(s) 351, 978, 987
TasI AATT 9 cut(s) 36, 334, 594, 618, 662, 701, 790, 1062, 1072
TatI WGTACW 1 cut(s) 994
TauI GCSGC 1 cut(s) 964
TfiI GAWTC 2 cut(s) 641, 989
Tru1I TTAA 3 cut(s) 15, 468, 1075
Tru9I TTAA 3 cut(s) 15, 468, 1075
TscAI CASTG 3 cut(s) 166, 366, 567
TseFI GTSAC 1 cut(s) 622
TseI GCWGC 1 cut(s) 752
Tsp45I GTSAC 1 cut(s) 622
TspDTI ATGAA 2 cut(s) 813, 1056
TspRI CASTG 3 cut(s) 166, 366, 567
Tth111I GACNNNGTC 1 cut(s) 983
Van91I CCANNNNNTGG 1 cut(s) 262
XapI RAATTY 2 cut(s) 662, 1062
XceI RCATGY 1 cut(s) 780
XcmI CCANNNNNNNNNTGG 2 cut(s) 763, 813
XmiI GTMKAC 1 cut(s) 978
XspI CTAG 4 cut(s) 207, 224, 267, 389
ZraI GACGTC 1 cut(s) 985
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.