Rroxscaffold_3G00265310

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0014930
Physical Location & Seq
Forward (+)
58726748 .. 58727926
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00265310.1

Sequence Viewer

Length: 870 bp
ATGTCGATTGGCTCCCCAGATGTTCTCATCATCCCTGCAGATGTTTCCAAGGTTGAAGATTGTAACCGCTTTGTCGATGTAACAGTGAATCATTTTGGGCGCTGTAAGTGCATGTATCCTATATCAATAGCTCTATTACTTTCAATTAATTATTATCTTCTGTTTACACTTACTCGTGTTTTTCTATGCTTAATTACAGTGGATCACCTAGTGAATAATGCTGGGATTGCTCCTATCTGCATGTTTGAAGAAACTCATGATGTTAACTACTTAGCACCAGCCATGGACATAAACTTTTGGGGTTCAGTATACAGCACCTACTTCGCGATTCCTCACCTTAAACGGAGCCAAGGGAGGATCGTAGGGGTCGCCTCCTCTGCTGGATGGTTGCGTGTCCCACGACTAAGCATGTATAGTGCTAGCAAAACAGCAGTGATAAGCTTTTATGAGACATTGAGAGTTGAAATTGGGGATGAAGTTGGAATAACAATTGTGACTCCAGGGCTTATCGAATCAGAAATGACTCGAGGCAAATTCCTAAACAAGGAAGGCCGATTGGTATTAGATCAAGAACTGAGAGATGCTGAAGTAAGCTTAATGCCTGTACTGCCTGTCAAAGAAGCTGCCGAAGCAATTGTGGACGGCGCCTGCCAAGGAGAAAATTACTTGACAGTACCAGCTTGGGTTAGGCAGTCATTTTACTGGAATGTGTTTTCACCTGAGATACTGGAGTGGGGTAATCGTATCCTGCTAACGAGCAGATCAGGAGATGAGAGGGATACACTAAGCAAGAAGATCCTGGACATTTCTGGCTTGAAGGATTTGGTGTATCCAGACACAATTCGATCTCCTCAGATTAGAGAACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

289

Amino Acids

32.43

Weight (kDa)

5.33

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 66 - 178 4.7e-25 short chain dehydrogenase
adh_short_C2 PF13561 66 - 177 9.1e-14 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014930)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50770
fragaria_vesca FvH4_5g08730
malus_domestica MD14G1152800.v1.1
prunus_persica Prupe.5G147800_v2.0.a1
pyrus_communis pycom14g12720 pycom14g12730
rosa_chinensis RchiOBHm_Chr7g0189551
rosa_laevigata RLG00000004601
rosa_multiflora Rmu_sc0001924.1_g000012
rosa_roxburghii Rroxscaffold_3G00265310
rosa_rugosa Rorug06G0498900
rosa_samantha Rh7AG103900 Rh7BG106600 Rh7CG108700 Rh7DG106000
rosa_wichuraiana Rw7G008970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 644
AccI GTMKAC 1 cut(s) 309
AccII CGCG 1 cut(s) 326
AciI CCGC 1 cut(s) 67
AclWI GGATC 3 cut(s) 210, 365, 790
AcsI RAATTY 1 cut(s) 533
AcuI CTGAAG 1 cut(s) 606
AcyI GRCGYC 1 cut(s) 645
AdeI CACNNNGTG 1 cut(s) 211
AfaI GTAC 2 cut(s) 606, 675
AfiI CCNNNNNNNGG 1 cut(s) 544
AgsI TTSAA 5 cut(s) 56, 144, 248, 464, 817
AjnI CCWGG 2 cut(s) 499, 798
AluBI AGCT 5 cut(s) 131, 441, 594, 623, 680
AluI AGCT 5 cut(s) 131, 441, 594, 623, 680
Alw26I GTCTC 1 cut(s) 443
AlwI GGATC 3 cut(s) 210, 365, 790
Ama87I CYCGRG 1 cut(s) 525
AoxI GGCC 1 cut(s) 550
ApeKI GCWGC 1 cut(s) 623
ApoI RAATTY 1 cut(s) 533
AseI ATTAAT 1 cut(s) 147
AspLEI GCGC 2 cut(s) 102, 647
AsuHPI GGTGA 3 cut(s) 197, 326, 708
AsuNHI GCTAGC 1 cut(s) 419
AvaI CYCGRG 1 cut(s) 525
BaeI ACNNNNGTAYC 2 cut(s) 716, 749
BanI GGYRCC 1 cut(s) 644
BauI CACGAG 1 cut(s) 174
BbvI GCAGC 1 cut(s) 610
BccI CCATC 1 cut(s) 378
BceAI ACGGC 1 cut(s) 658
BcgI CGANNNNNNTGC 2 cut(s) 304, 338
BciT130I CCWGG 2 cut(s) 501, 800
BciVI GTATCC 4 cut(s) 126, 755, 772, 840
BcoDI GTCTC 1 cut(s) 443
BfaI CTAG 2 cut(s) 209, 420
BfmI CTRYAG 1 cut(s) 36
BfoI RGCGCY 2 cut(s) 103, 648
BfuI GTATCC 4 cut(s) 126, 755, 772, 840
BisI GCNGC 1 cut(s) 624
BlsI GCNGC 1 cut(s) 625
Bme1390I CCNGG 2 cut(s) 501, 800
BmeT110I CYCGRG 1 cut(s) 525
BmiI GGNNCC 3 cut(s) 13, 347, 646
BmrFI CCNGG 2 cut(s) 501, 800
BmsI GCATC 1 cut(s) 571
BmtI GCTAGC 1 cut(s) 423
BpmI CTGGAG 2 cut(s) 483, 749
BsaHI GRCGYC 1 cut(s) 645
BsaJI CCNNGG 5 cut(s) 48, 282, 349, 500, 652
Bsc4I CCNNNNNNNGG 1 cut(s) 544
Bse1I ACTGG 2 cut(s) 707, 732
BseBI CCWGG 2 cut(s) 501, 800
BseDI CCNNGG 5 cut(s) 48, 282, 349, 500, 652
BseGI GGATG 3 cut(s) 30, 389, 478
BseLI CCNNNNNNNGG 1 cut(s) 544
BseMII CTCAG 3 cut(s) 566, 711, 866
BseNI ACTGG 2 cut(s) 707, 732
BseRI GAGGAG 2 cut(s) 364, 840
BseXI GCAGC 1 cut(s) 610
BseYI CCCAGC 1 cut(s) 221
Bsh1236I CGCG 1 cut(s) 326
BshFI GGCC 1 cut(s) 552
BshNI GGYRCC 1 cut(s) 644
BsiHKCI CYCGRG 1 cut(s) 525
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 1 cut(s) 544
BsmAI GTCTC 1 cut(s) 443
BsmFI GGGAC 1 cut(s) 380
BsnI GGCC 1 cut(s) 552
BsoBI CYCGRG 1 cut(s) 525
Bsp143I GATC 6 cut(s) 202, 357, 565, 761, 795, 845
Bsp19I CCATGG 1 cut(s) 282
Bsp68I TCGCGA 1 cut(s) 326
BspACI CCGC 1 cut(s) 67
BspANI GGCC 1 cut(s) 552
BspCNI CTCAG 3 cut(s) 567, 712, 865
BspFNI CGCG 1 cut(s) 326
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 3 cut(s) 13, 347, 646
BspMAI CTGCAG 1 cut(s) 40
BspOI GCTAGC 1 cut(s) 423
BspPI GGATC 3 cut(s) 210, 365, 790
BspT107I GGYRCC 1 cut(s) 644
BsrI ACTGG 2 cut(s) 707, 732
BssECI CCNNGG 5 cut(s) 48, 282, 349, 500, 652
BssMI GATC 6 cut(s) 202, 357, 565, 761, 795, 845
BssNAI GTATAC 1 cut(s) 310
BssNI GRCGYC 1 cut(s) 645
BssSI CACGAG 1 cut(s) 174
BssT1I CCWWGG 4 cut(s) 48, 282, 349, 652
Bst1107I GTATAC 1 cut(s) 310
Bst2BI CACGAG 1 cut(s) 174
Bst2UI CCWGG 2 cut(s) 501, 800
Bst4CI ACNGT 3 cut(s) 85, 199, 673
BstACI GRCGYC 1 cut(s) 645
BstC8I GCNNGC 2 cut(s) 421, 649
BstDEI CTNAG 6 cut(s) 271, 404, 575, 720, 785, 852
BstDSI CCRYGG 1 cut(s) 282
BstENI CCTNNNNNAGG 1 cut(s) 542
BstF5I GGATG 3 cut(s) 30, 389, 478
BstFNI CGCG 1 cut(s) 326
BstH2I RGCGCY 2 cut(s) 103, 648
BstHHI GCGC 2 cut(s) 102, 647
BstKTI GATC 6 cut(s) 205, 360, 568, 764, 798, 848
BstMAI GTCTC 1 cut(s) 443
BstMBI GATC 6 cut(s) 202, 357, 565, 761, 795, 845
BstMWI GCNNNNNNNGC 5 cut(s) 108, 227, 377, 607, 629
BstNI CCWGG 2 cut(s) 501, 800
BstNSI RCATGY 3 cut(s) 115, 244, 412
BstSCI CCNGG 2 cut(s) 499, 798
BstSFI CTRYAG 1 cut(s) 36
BstUI CGCG 1 cut(s) 326
BstV1I GCAGC 1 cut(s) 610
BstX2I RGATCY 1 cut(s) 795
BstYI RGATCY 1 cut(s) 795
BstZ17I GTATAC 1 cut(s) 310
BsuI GTATCC 4 cut(s) 126, 755, 772, 840
BsuRI GGCC 1 cut(s) 552
BtgI CCRYGG 1 cut(s) 282
BtsCI GGATG 3 cut(s) 30, 389, 478
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 4 cut(s) 90, 204, 438, 865
BtuMI TCGCGA 1 cut(s) 326
Cac8I GCNNGC 2 cut(s) 421, 649
CciI TCATGA 1 cut(s) 256
CfoI GCGC 2 cut(s) 102, 647
Csp6I GTAC 2 cut(s) 605, 674
CviAII CATG 5 cut(s) 112, 241, 257, 283, 409
CviQI GTAC 2 cut(s) 605, 674
DdeI CTNAG 6 cut(s) 271, 404, 575, 720, 785, 852
DinI GGCGCC 1 cut(s) 646
DpnI GATC 6 cut(s) 204, 359, 567, 763, 797, 847
DpnII GATC 6 cut(s) 202, 357, 565, 761, 795, 845
DraIII CACNNNGTG 1 cut(s) 211
Eco130I CCWWGG 4 cut(s) 48, 282, 349, 652
Eco57I CTGAAG 1 cut(s) 606
Eco88I CYCGRG 1 cut(s) 525
EcoNI CCTNNNNNAGG 1 cut(s) 542
EcoRII CCWGG 2 cut(s) 499, 798
EcoT14I CCWWGG 4 cut(s) 48, 282, 349, 652
EgeI GGCGCC 1 cut(s) 646
EheI GGCGCC 1 cut(s) 646
ErhI CCWWGG 4 cut(s) 48, 282, 349, 652
FaeI CATG 5 cut(s) 115, 244, 260, 286, 412
FaqI GGGAC 1 cut(s) 380
FatI CATG 5 cut(s) 111, 240, 256, 282, 408
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 1 cut(s) 624
FokI GGATG 3 cut(s) 17, 396, 485
Fsp4HI GCNGC 1 cut(s) 624
FspBI CTAG 2 cut(s) 209, 420
GlaI GCGC 2 cut(s) 101, 646
GluI GCNGC 1 cut(s) 624
GsaI CCCAGC 1 cut(s) 225
GsuI CTGGAG 2 cut(s) 483, 749
HaeII RGCGCY 2 cut(s) 103, 648
HaeIII GGCC 1 cut(s) 552
HhaI GCGC 2 cut(s) 102, 647
Hin1I GRCGYC 1 cut(s) 645
Hin1II CATG 5 cut(s) 115, 244, 260, 286, 412
Hin6I GCGC 2 cut(s) 100, 645
HinP1I GCGC 2 cut(s) 100, 645
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HindIII AAGCTT 2 cut(s) 439, 592
HinfI GANTC 5 cut(s) 88, 328, 496, 512, 523
HpaI GTTAAC 1 cut(s) 265
HphI GGTGA 3 cut(s) 197, 326, 708
Hpy166II GTNNAC 4 cut(s) 165, 265, 310, 640
Hpy188I TCNGA 2 cut(s) 517, 855
Hpy188III TCNNGA 5 cut(s) 257, 325, 569, 765, 833
Hpy8I GTNNAC 4 cut(s) 165, 265, 310, 640
HpyAV CCTTC 2 cut(s) 542, 811
HpyCH4III ACNGT 3 cut(s) 85, 199, 673
HpyCH4V TGCA 3 cut(s) 38, 111, 240
HpyF10VI GCNNNNNNNGC 5 cut(s) 108, 227, 377, 607, 629
HpyF3I CTNAG 6 cut(s) 271, 404, 575, 720, 785, 852
Hsp92I GRCGYC 1 cut(s) 645
Hsp92II CATG 5 cut(s) 115, 244, 260, 286, 412
HspAI GCGC 2 cut(s) 100, 645
KasI GGCGCC 1 cut(s) 644
KspAI GTTAAC 1 cut(s) 265
Kzo9I GATC 6 cut(s) 202, 357, 565, 761, 795, 845
LmnI GCTCC 3 cut(s) 17, 235, 345
Lsp1109I GCAGC 1 cut(s) 610
LweI GCATC 1 cut(s) 571
MaeI CTAG 2 cut(s) 209, 420
MaeIII GTNAC 3 cut(s) 62, 79, 493
MalI GATC 6 cut(s) 204, 359, 567, 763, 797, 847
MboI GATC 6 cut(s) 202, 357, 565, 761, 795, 845
MboII GAAGA 4 cut(s) 68, 149, 260, 805
MfeI CAATTG 2 cut(s) 489, 633
MflI RGATCY 1 cut(s) 795
MluCI AATT 9 cut(s) 144, 148, 192, 465, 489, 533, 633, 661, 840
Mly113I GGCGCC 1 cut(s) 645
MlyI GAGTC 2 cut(s) 490, 517
MmeI TCCRAC 1 cut(s) 460
MnlI CCTC 7 cut(s) 342, 348, 382, 385, 521, 768, 861
MseI TTAA 5 cut(s) 147, 191, 264, 339, 596
MspR9I CCNGG 2 cut(s) 501, 800
MunI CAATTG 2 cut(s) 489, 633
MvaI CCWGG 2 cut(s) 501, 800
MvnI CGCG 1 cut(s) 326
MwoI GCNNNNNNNGC 5 cut(s) 108, 227, 377, 607, 629
NarI GGCGCC 1 cut(s) 645
NcoI CCATGG 1 cut(s) 282
NdeII GATC 6 cut(s) 202, 357, 565, 761, 795, 845
NheI GCTAGC 1 cut(s) 419
NlaIII CATG 5 cut(s) 115, 244, 260, 286, 412
NlaIV GGNNCC 3 cut(s) 13, 347, 646
NmuCI GTSAC 1 cut(s) 493
NruI TCGCGA 1 cut(s) 326
NspI RCATGY 3 cut(s) 115, 244, 412
PaeR7I CTCGAG 1 cut(s) 525
PagI TCATGA 1 cut(s) 256
PfeI GAWTC 3 cut(s) 88, 328, 512
PfoI TCCNGGA 1 cut(s) 798
PkrI GCNGC 1 cut(s) 625
PleI GAGTC 2 cut(s) 490, 517
PluTI GGCGCC 1 cut(s) 648
PpsI GAGTC 2 cut(s) 490, 517
PshBI ATTAAT 1 cut(s) 147
Psp6I CCWGG 2 cut(s) 499, 798
PspFI CCCAGC 1 cut(s) 221
PspGI CCWGG 2 cut(s) 499, 798
PspN4I GGNNCC 3 cut(s) 13, 347, 646
PspXI VCTCGAGB 1 cut(s) 525
PstI CTGCAG 1 cut(s) 40
PsuI RGATCY 1 cut(s) 795
RruI TCGCGA 1 cut(s) 326
RsaI GTAC 2 cut(s) 606, 675
RsaNI GTAC 2 cut(s) 605, 674
SaqAI TTAA 5 cut(s) 147, 191, 264, 339, 596
SatI GCNGC 1 cut(s) 624
Sau3AI GATC 6 cut(s) 202, 357, 565, 761, 795, 845
SchI GAGTC 2 cut(s) 490, 517
ScrFI CCNGG 2 cut(s) 501, 800
SfaNI GCATC 1 cut(s) 571
SfcI CTRYAG 1 cut(s) 36
SfoI GGCGCC 1 cut(s) 646
Sfr274I CTCGAG 1 cut(s) 525
SlaI CTCGAG 1 cut(s) 525
SmlI CTYRAG 1 cut(s) 525
SmoI CTYRAG 1 cut(s) 525
Sse9I AATT 9 cut(s) 144, 148, 192, 465, 489, 533, 633, 661, 840
SsiI CCGC 1 cut(s) 67
SspDI GGCGCC 1 cut(s) 644
SspMI CTAG 2 cut(s) 209, 420
StyD4I CCNGG 2 cut(s) 499, 798
StyI CCWWGG 4 cut(s) 48, 282, 349, 652
TaaI ACNGT 3 cut(s) 85, 199, 673
TaqI TCGA 5 cut(s) 5, 75, 510, 526, 844
TasI AATT 9 cut(s) 144, 148, 192, 465, 489, 533, 633, 661, 840
TatI WGTACW 1 cut(s) 604
TfiI GAWTC 3 cut(s) 88, 328, 512
Tru1I TTAA 5 cut(s) 147, 191, 264, 339, 596
Tru9I TTAA 5 cut(s) 147, 191, 264, 339, 596
TscAI CASTG 3 cut(s) 90, 204, 438
TseFI GTSAC 1 cut(s) 493
TseI GCWGC 1 cut(s) 623
Tsp45I GTSAC 1 cut(s) 493
TspDTI ATGAA 1 cut(s) 489
TspGWI ACGGA 1 cut(s) 358
TspRI CASTG 3 cut(s) 90, 204, 438
VspI ATTAAT 1 cut(s) 147
XagI CCTNNNNNAGG 1 cut(s) 542
XapI RAATTY 1 cut(s) 533
XceI RCATGY 3 cut(s) 115, 244, 412
XhoI CTCGAG 1 cut(s) 525
XmiI GTMKAC 1 cut(s) 309
XspI CTAG 2 cut(s) 209, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.