RchiOBHm_Chr7g0189551

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0014930
Physical Location & Seq
Reverse (-)
8878677 .. 8880267
1591 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16929

Sequence Viewer

Length: 1023 bp
ATGGATATCATCAACACACTACTAAACATTGTGGTTCCTCCCATCGGCCTCACCTCGTTGCTCTTCTTTCTGCCACCATATCTGTTTTTCAAGTTTCTCCTCTCAACGATAAAGCCGCTGTTTCGGGAAAACGTGGCCGGAAAAGTCGTACTCATCGCCGGAGCATCCTCCGGCATAGGCGAGCATCTGGCATACGAGTACGCTAGAAGAGGAGCTTGTCTTGCTCTTGTTGCCAGAAGAGAACACCGACTCCAACACGTGGCGAGCAGAGCCATGTCGATTGGCTCCCCAGATGTTCTCATCATCCCTGCAGATGTTTCCAAGGTTGAAGATTGTAACCGCTTTGTCGATGTAACAGTGAATCATTTTGGGAGCTTGGATCACCTAGTGAATAATGCTGGGATTGCTCCTATCTGCATGTTTGAAGAAACTCCTGATGACATAAACTTTTGGGGTTCAGTCTACAGCACCTACTTCGCAATTCCTCACCTTAAACGGAGCCAAGGGAGGATCGTAGGGGTCGCCTCCTCTGCTGGATGGTTGCGTGTCCCACGACTAAGCATGTATAGTGCTAGCAAAACAGCAGTGATAAGCTTTTATGAGACATTGAGGGTTGAAATTGGGCATGAAGTTGGAATAACAATTGTGACTCCAGGGCTTATCGAATCAGAAATGACTCGAGGCAAATTCCTAAACAAGGAAGGTCGATTGGTATTAGATCAAGAACTGAGAGATGTTGAAGTAAGCTTAACGCCTGTACTGCCTGTCAAAGAAGCTGCCGAAGCAATTGTGGACGGCGCCTGCCAAGGAGAAAAGTACTTGACAGTACCAGCTTGGGTTAAGCAGTCATTTTACTGGAAGGTGTTTTCACCTGAGATACTGGAGTGGGGTAATCGTATCCTGCTAATGAGCAGATCAGGAGATGAGCGGGATACACTAAGCAAGAAGATCCTGGACATTTCTGGCTTGAAGAATTTGGTGTATCCAGACACAATTCGATCTCCTCAGATTAGAGAACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

340

Amino Acids

37.86

Weight (kDa)

6.72

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 48 - 229 2.8e-41 short chain dehydrogenase
adh_short_C2 PF13561 54 - 228 3.1e-25 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014930)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50770
fragaria_vesca FvH4_5g08730
malus_domestica MD14G1152800.v1.1
prunus_persica Prupe.5G147800_v2.0.a1
pyrus_communis pycom14g12720 pycom14g12730
rosa_chinensis RchiOBHm_Chr7g0189551
rosa_laevigata RLG00000004601
rosa_multiflora Rmu_sc0001924.1_g000012
rosa_roxburghii Rroxscaffold_3G00265310
rosa_rugosa Rorug06G0498900
rosa_samantha Rh7AG103900 Rh7BG106600 Rh7CG108700 Rh7DG106000
rosa_wichuraiana Rw7G008970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 797
AccB7I CCANNNNNTGG 1 cut(s) 259
AccBSI CCGCTC 1 cut(s) 928
AccI GTMKAC 1 cut(s) 462
AciI CCGC 3 cut(s) 116, 340, 928
AclWI GGATC 3 cut(s) 387, 518, 943
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 2 cut(s) 686, 973
AcvI CACGTG 1 cut(s) 259
AcyI GRCGYC 1 cut(s) 798
AdeI CACNNNGTG 1 cut(s) 388
AfaI GTAC 5 cut(s) 150, 200, 759, 818, 828
AfiI CCNNNNNNNGG 3 cut(s) 44, 259, 697
AflIII ACRYGT 1 cut(s) 256
AgsI TTSAA 6 cut(s) 91, 329, 425, 617, 740, 970
AjnI CCWGG 2 cut(s) 652, 951
AloI GAACNNNNNNTCC 2 cut(s) 234, 266
AluBI AGCT 6 cut(s) 215, 375, 594, 747, 776, 833
AluI AGCT 6 cut(s) 215, 375, 594, 747, 776, 833
Alw26I GTCTC 1 cut(s) 596
AlwI GGATC 3 cut(s) 387, 518, 943
Ama87I CYCGRG 1 cut(s) 678
AoxI GGCC 2 cut(s) 46, 135
ApeKI GCWGC 1 cut(s) 776
ApoI RAATTY 2 cut(s) 686, 973
AspLEI GCGC 1 cut(s) 800
AsuHPI GGTGA 4 cut(s) 43, 374, 479, 861
AsuNHI GCTAGC 1 cut(s) 572
AvaI CYCGRG 1 cut(s) 678
BaeI ACNNNNGTAYC 2 cut(s) 869, 902
BanI GGYRCC 1 cut(s) 797
BbrPI CACGTG 1 cut(s) 259
BbvI GCAGC 1 cut(s) 763
BccI CCATC 2 cut(s) 50, 531
BceAI ACGGC 1 cut(s) 811
BcgI CGANNNNNNTGC 2 cut(s) 457, 491
BciT130I CCWGG 2 cut(s) 654, 953
BciVI GTATCC 3 cut(s) 908, 925, 993
BcoDI GTCTC 1 cut(s) 596
BfaI CTAG 3 cut(s) 204, 386, 573
BfmI CTRYAG 2 cut(s) 309, 463
BfoI RGCGCY 1 cut(s) 801
BfuI GTATCC 3 cut(s) 908, 925, 993
BisI GCNGC 2 cut(s) 116, 777
BlsI GCNGC 2 cut(s) 117, 778
BmcAI AGTACT 1 cut(s) 818
Bme1390I CCNGG 2 cut(s) 654, 953
BmeT110I CYCGRG 1 cut(s) 678
BmiI GGNNCC 4 cut(s) 36, 286, 500, 799
BmrFI CCNGG 2 cut(s) 654, 953
BmsI GCATC 2 cut(s) 173, 193
BmtI GCTAGC 1 cut(s) 576
BpmI CTGGAG 2 cut(s) 636, 902
BsaAI YACGTR 1 cut(s) 259
BsaHI GRCGYC 1 cut(s) 798
BsaJI CCNNGG 4 cut(s) 321, 502, 653, 805
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 259, 697
Bse1I ACTGG 2 cut(s) 860, 885
BseBI CCWGG 2 cut(s) 654, 953
BseDI CCNNGG 4 cut(s) 321, 502, 653, 805
BseGI GGATG 3 cut(s) 164, 303, 542
BseLI CCNNNNNNNGG 3 cut(s) 44, 259, 697
BseMII CTCAG 3 cut(s) 719, 864, 1019
BseNI ACTGG 2 cut(s) 860, 885
BseRI GAGGAG 4 cut(s) 89, 225, 517, 993
BseXI GCAGC 1 cut(s) 763
BseYI CCCAGC 1 cut(s) 398
BshFI GGCC 2 cut(s) 48, 137
BshNI GGYRCC 1 cut(s) 797
BsiHKCI CYCGRG 1 cut(s) 678
BsiSI CCGG 3 cut(s) 138, 159, 171
BslFI GGGAC 1 cut(s) 533
BslI CCNNNNNNNGG 3 cut(s) 44, 259, 697
BsmAI GTCTC 1 cut(s) 596
BsmFI GGGAC 1 cut(s) 533
BsnI GGCC 2 cut(s) 48, 137
BsoBI CYCGRG 1 cut(s) 678
Bsp143I GATC 6 cut(s) 379, 510, 718, 914, 948, 998
BspACI CCGC 3 cut(s) 116, 340, 928
BspANI GGCC 2 cut(s) 48, 137
BspCNI CTCAG 3 cut(s) 720, 865, 1018
BspLI GGNNCC 4 cut(s) 36, 286, 500, 799
BspMAI CTGCAG 1 cut(s) 313
BspOI GCTAGC 1 cut(s) 576
BspPI GGATC 3 cut(s) 387, 518, 943
BspQI GCTCTTC 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 797
BsrBI CCGCTC 1 cut(s) 928
BsrI ACTGG 2 cut(s) 860, 885
BssECI CCNNGG 4 cut(s) 321, 502, 653, 805
BssMI GATC 6 cut(s) 379, 510, 718, 914, 948, 998
BssNI GRCGYC 1 cut(s) 798
BssT1I CCWWGG 3 cut(s) 321, 502, 805
Bst2UI CCWGG 2 cut(s) 654, 953
Bst4CI ACNGT 2 cut(s) 358, 826
Bst6I CTCTTC 3 cut(s) 68, 202, 232
BstACI GRCGYC 1 cut(s) 798
BstBAI YACGTR 1 cut(s) 259
BstC8I GCNNGC 4 cut(s) 182, 265, 574, 802
BstDEI CTNAG 5 cut(s) 557, 728, 873, 938, 1005
BstENI CCTNNNNNAGG 1 cut(s) 695
BstF5I GGATG 3 cut(s) 164, 303, 542
BstH2I RGCGCY 1 cut(s) 801
BstHHI GCGC 1 cut(s) 800
BstKTI GATC 6 cut(s) 382, 513, 721, 917, 951, 1001
BstMAI GTCTC 1 cut(s) 596
BstMBI GATC 6 cut(s) 379, 510, 718, 914, 948, 998
BstMWI GCNNNNNNNGC 7 cut(s) 221, 230, 269, 404, 530, 760, 782
BstNI CCWGG 2 cut(s) 654, 953
BstNSI RCATGY 2 cut(s) 421, 565
BstSCI CCNGG 2 cut(s) 652, 951
BstSFI CTRYAG 2 cut(s) 309, 463
BstV1I GCAGC 1 cut(s) 763
BstX2I RGATCY 1 cut(s) 948
BstYI RGATCY 1 cut(s) 948
BsuI GTATCC 3 cut(s) 908, 925, 993
BsuRI GGCC 2 cut(s) 48, 137
BtgZI GCGATG 1 cut(s) 139
BtsCI GGATG 3 cut(s) 164, 303, 542
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 3 cut(s) 363, 591, 1018
Cac8I GCNNGC 4 cut(s) 182, 265, 574, 802
CfoI GCGC 1 cut(s) 800
Csp6I GTAC 5 cut(s) 149, 199, 758, 817, 827
CviAII CATG 4 cut(s) 274, 418, 562, 626
CviQI GTAC 5 cut(s) 149, 199, 758, 817, 827
DdeI CTNAG 5 cut(s) 557, 728, 873, 938, 1005
DinI GGCGCC 1 cut(s) 799
DpnI GATC 6 cut(s) 381, 512, 720, 916, 950, 1000
DpnII GATC 6 cut(s) 379, 510, 718, 914, 948, 998
DraIII CACNNNGTG 1 cut(s) 388
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 3 cut(s) 68, 202, 232
EarI CTCTTC 3 cut(s) 68, 202, 232
Eco130I CCWWGG 3 cut(s) 321, 502, 805
Eco32I GATATC 1 cut(s) 7
Eco72I CACGTG 1 cut(s) 259
Eco88I CYCGRG 1 cut(s) 678
EcoNI CCTNNNNNAGG 1 cut(s) 695
EcoRII CCWGG 2 cut(s) 652, 951
EcoRV GATATC 1 cut(s) 7
EcoT14I CCWWGG 3 cut(s) 321, 502, 805
EgeI GGCGCC 1 cut(s) 799
EheI GGCGCC 1 cut(s) 799
ErhI CCWWGG 3 cut(s) 321, 502, 805
FaeI CATG 4 cut(s) 277, 421, 565, 629
FalI AAGNNNNNCTT 2 cut(s) 199, 231
FaqI GGGAC 1 cut(s) 533
FatI CATG 4 cut(s) 273, 417, 561, 625
FauI CCCGC 1 cut(s) 921
FblI GTMKAC 1 cut(s) 462
Fnu4HI GCNGC 2 cut(s) 116, 777
FokI GGATG 3 cut(s) 151, 290, 549
Fsp4HI GCNGC 2 cut(s) 116, 777
FspBI CTAG 3 cut(s) 204, 386, 573
GlaI GCGC 1 cut(s) 799
GluI GCNGC 2 cut(s) 116, 777
GsaI CCCAGC 1 cut(s) 402
GsuI CTGGAG 2 cut(s) 636, 902
HaeII RGCGCY 1 cut(s) 801
HaeIII GGCC 2 cut(s) 48, 137
HapII CCGG 3 cut(s) 138, 159, 171
HhaI GCGC 1 cut(s) 800
Hin1I GRCGYC 1 cut(s) 798
Hin1II CATG 4 cut(s) 277, 421, 565, 629
Hin6I GCGC 1 cut(s) 798
HinP1I GCGC 1 cut(s) 798
HindIII AAGCTT 2 cut(s) 592, 745
HinfI GANTC 5 cut(s) 249, 361, 649, 665, 676
HpaII CCGG 3 cut(s) 138, 159, 171
HphI GGTGA 4 cut(s) 43, 374, 479, 861
Hpy166II GTNNAC 2 cut(s) 463, 793
Hpy188I TCNGA 2 cut(s) 670, 1008
Hpy188III TCNNGA 5 cut(s) 125, 434, 722, 918, 986
Hpy8I GTNNAC 2 cut(s) 463, 793
HpyAV CCTTC 2 cut(s) 695, 853
HpyCH4III ACNGT 2 cut(s) 358, 826
HpyCH4IV ACGT 2 cut(s) 132, 258
HpyCH4V TGCA 2 cut(s) 311, 417
HpyF10VI GCNNNNNNNGC 7 cut(s) 221, 230, 269, 404, 530, 760, 782
HpyF3I CTNAG 5 cut(s) 557, 728, 873, 938, 1005
HpySE526I ACGT 2 cut(s) 132, 258
Hsp92I GRCGYC 1 cut(s) 798
Hsp92II CATG 4 cut(s) 277, 421, 565, 629
HspAI GCGC 1 cut(s) 798
KasI GGCGCC 1 cut(s) 797
Kzo9I GATC 6 cut(s) 379, 510, 718, 914, 948, 998
LguI GCTCTTC 1 cut(s) 68
LmnI GCTCC 6 cut(s) 161, 212, 290, 372, 412, 498
Lsp1109I GCAGC 1 cut(s) 763
LweI GCATC 2 cut(s) 173, 193
MaeI CTAG 3 cut(s) 204, 386, 573
MaeII ACGT 2 cut(s) 132, 258
MaeIII GTNAC 3 cut(s) 335, 352, 646
MalI GATC 6 cut(s) 381, 512, 720, 916, 950, 1000
MbiI CCGCTC 1 cut(s) 928
MboI GATC 6 cut(s) 379, 510, 718, 914, 948, 998
MboII GAAGA 7 cut(s) 55, 219, 249, 341, 437, 958, 982
MfeI CAATTG 2 cut(s) 642, 786
MflI RGATCY 1 cut(s) 948
MluCI AATT 7 cut(s) 480, 618, 642, 686, 786, 973, 993
Mly113I GGCGCC 1 cut(s) 798
MlyI GAGTC 3 cut(s) 243, 643, 670
MmeI TCCRAC 2 cut(s) 277, 613
MseI TTAA 3 cut(s) 492, 749, 840
MspA1I CMGCKG 1 cut(s) 118
MspI CCGG 3 cut(s) 138, 159, 171
MspR9I CCNGG 2 cut(s) 654, 953
MunI CAATTG 2 cut(s) 642, 786
MvaI CCWGG 2 cut(s) 654, 953
MwoI GCNNNNNNNGC 7 cut(s) 221, 230, 269, 404, 530, 760, 782
NarI GGCGCC 1 cut(s) 798
NdeII GATC 6 cut(s) 379, 510, 718, 914, 948, 998
NheI GCTAGC 1 cut(s) 572
NlaIII CATG 4 cut(s) 277, 421, 565, 629
NlaIV GGNNCC 4 cut(s) 36, 286, 500, 799
NmuCI GTSAC 1 cut(s) 646
NspI RCATGY 2 cut(s) 421, 565
PaeR7I CTCGAG 1 cut(s) 678
PciSI GCTCTTC 1 cut(s) 68
PfeI GAWTC 2 cut(s) 361, 665
PflMI CCANNNNNTGG 1 cut(s) 259
PfoI TCCNGGA 1 cut(s) 951
PkrI GCNGC 2 cut(s) 117, 778
PleI GAGTC 3 cut(s) 243, 643, 670
PluTI GGCGCC 1 cut(s) 801
PmaCI CACGTG 1 cut(s) 259
PmlI CACGTG 1 cut(s) 259
PpsI GAGTC 3 cut(s) 243, 643, 670
Ppu21I YACGTR 1 cut(s) 259
Psp6I CCWGG 2 cut(s) 652, 951
PspCI CACGTG 1 cut(s) 259
PspFI CCCAGC 1 cut(s) 398
PspGI CCWGG 2 cut(s) 652, 951
PspN4I GGNNCC 4 cut(s) 36, 286, 500, 799
PspXI VCTCGAGB 1 cut(s) 678
PstI CTGCAG 1 cut(s) 313
PsuI RGATCY 1 cut(s) 948
RsaI GTAC 5 cut(s) 150, 200, 759, 818, 828
RsaNI GTAC 5 cut(s) 149, 199, 758, 817, 827
SapI GCTCTTC 1 cut(s) 68
SaqAI TTAA 3 cut(s) 492, 749, 840
SatI GCNGC 2 cut(s) 116, 777
Sau3AI GATC 6 cut(s) 379, 510, 718, 914, 948, 998
ScaI AGTACT 1 cut(s) 818
SchI GAGTC 3 cut(s) 243, 643, 670
ScrFI CCNGG 2 cut(s) 654, 953
SfaNI GCATC 2 cut(s) 173, 193
SfcI CTRYAG 2 cut(s) 309, 463
SfoI GGCGCC 1 cut(s) 799
Sfr274I CTCGAG 1 cut(s) 678
SlaI CTCGAG 1 cut(s) 678
SmlI CTYRAG 1 cut(s) 678
SmoI CTYRAG 1 cut(s) 678
Sse9I AATT 7 cut(s) 480, 618, 642, 686, 786, 973, 993
SsiI CCGC 3 cut(s) 116, 340, 928
SspDI GGCGCC 1 cut(s) 797
SspMI CTAG 3 cut(s) 204, 386, 573
StyD4I CCNGG 2 cut(s) 652, 951
StyI CCWWGG 3 cut(s) 321, 502, 805
TaaI ACNGT 2 cut(s) 358, 826
TaiI ACGT 2 cut(s) 135, 261
TaqI TCGA 6 cut(s) 278, 348, 663, 679, 706, 997
TasI AATT 7 cut(s) 480, 618, 642, 686, 786, 973, 993
TatI WGTACW 2 cut(s) 757, 816
TauI GCSGC 1 cut(s) 118
TfiI GAWTC 2 cut(s) 361, 665
Tru1I TTAA 3 cut(s) 492, 749, 840
Tru9I TTAA 3 cut(s) 492, 749, 840
TscAI CASTG 2 cut(s) 363, 591
TseFI GTSAC 1 cut(s) 646
TseI GCWGC 1 cut(s) 776
Tsp45I GTSAC 1 cut(s) 646
TspDTI ATGAA 1 cut(s) 642
TspGWI ACGGA 1 cut(s) 511
TspRI CASTG 2 cut(s) 363, 591
Van91I CCANNNNNTGG 1 cut(s) 259
XagI CCTNNNNNAGG 1 cut(s) 695
XapI RAATTY 2 cut(s) 686, 973
XceI RCATGY 2 cut(s) 421, 565
XhoI CTCGAG 1 cut(s) 678
XmiI GTMKAC 1 cut(s) 462
XspI CTAG 3 cut(s) 204, 386, 573
ZrmI AGTACT 1 cut(s) 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.