Rh7DG106000

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0014930
Physical Location & Seq
Reverse (-)
9055623 .. 9057208
1586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG106000.1

Sequence Viewer

Length: 1056 bp
ATGGATATCATCAACACACTACTAAACATTGTGGTTCCTCCCATCGGCCTCACCTCGTTGCTCTTCTTTCTGCCACCATATCTGTTTTTCAAGTTTCTCCTCTCAACGATAAAGCCGCTGTTTCGGGAAAACGTGGCCGGAAAAGTCGTACTCATCGCCGGAGCATCCTCCGGCATAGGCGAGCATCTGGCATACGAGTACGCTAGAAGAGGAGCTTGTCTTGCTCTTGTTGCCAGAAGAGAACACCGACTCCAACACGTGGCGAGCAGAGCCATGTCGATTGGCTCCCCAGATGTTCTCATCATCCCTGCAGATGTTTCCAAGGTTGAAGATTGTAACCGCTTTGTCGATGTAACAGTGAATCATTTTGGGAGCTTGGATCACCTAGTGAATAATGCTGGGATTGCTCCTATCTGCATGTTTGAAGAAACTCCTGATGTTAACAACTTAGCACCAGCTATGCTAATTACAGACATAAACTTTTGGGGTTCAGTCTACAGCACCTACTTCGCAATTCCTCACCTTAAACGGAGCCAAGGGAGGATCGTAGGGGTCGCCTCCTCTGCTGGATGGTTGCGTGTCCCACGACTAAGCATGTATAGTGCTAGCAAAACAGCAGTGATAAGCTTTTATGAGACATTGAGGGTTGAAATTGGGCATGAAGTTGGAATAACAATTGTGACTCCAGGGCTTATCGAATCAGAAATGACTCGAGGCAAATTCCTAAACAAGGAAGGTCGATTGGTATTAGATCAAGAACTGAGAGATGTTGAAGTAAGCTTAACGCCTGTACTGCCTGTCAAAGAAGCTGCCGAAGCAATTGTGGACGGCGCCTGCCAAGGAGAAAAGTACTTGACAGTACCAGCTTGGGTTAAGCAGTCATTTTACTGGAAGGTGTTTTCACCTGAGATACTGGAGTGGGGTAATCGTATCCTGCTAATGAGCAGATCAGGAGATGAGCGGGATACACTAAGCAAGAAGATCCTGGACATTTCTGGCTTGAAGAATTTGGTGTATCCAGACACAATTCGATCTCCTCAGATTAGAGAACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

351

Amino Acids

38.99

Weight (kDa)

6.72

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 48 - 240 5e-43 short chain dehydrogenase
adh_short_C2 PF13561 54 - 239 6.8e-28 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014930)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50770
fragaria_vesca FvH4_5g08730
malus_domestica MD14G1152800.v1.1
prunus_persica Prupe.5G147800_v2.0.a1
pyrus_communis pycom14g12720 pycom14g12730
rosa_chinensis RchiOBHm_Chr7g0189551
rosa_laevigata RLG00000004601
rosa_multiflora Rmu_sc0001924.1_g000012
rosa_roxburghii Rroxscaffold_3G00265310
rosa_rugosa Rorug06G0498900
rosa_samantha Rh7AG103900 Rh7BG106600 Rh7CG108700 Rh7DG106000
rosa_wichuraiana Rw7G008970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 830
AccB7I CCANNNNNTGG 1 cut(s) 259
AccBSI CCGCTC 1 cut(s) 961
AccI GTMKAC 1 cut(s) 495
AciI CCGC 3 cut(s) 116, 340, 961
AclWI GGATC 3 cut(s) 387, 551, 976
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 2 cut(s) 719, 1006
AcvI CACGTG 1 cut(s) 259
AcyI GRCGYC 1 cut(s) 831
AdeI CACNNNGTG 1 cut(s) 388
AfaI GTAC 5 cut(s) 150, 200, 792, 851, 861
AfiI CCNNNNNNNGG 3 cut(s) 44, 259, 730
AflIII ACRYGT 1 cut(s) 256
AgsI TTSAA 6 cut(s) 91, 329, 425, 650, 773, 1003
AjnI CCWGG 2 cut(s) 685, 984
AloI GAACNNNNNNTCC 2 cut(s) 234, 266
AluBI AGCT 7 cut(s) 215, 375, 458, 627, 780, 809, 866
AluI AGCT 7 cut(s) 215, 375, 458, 627, 780, 809, 866
Alw26I GTCTC 1 cut(s) 629
AlwI GGATC 3 cut(s) 387, 551, 976
Ama87I CYCGRG 1 cut(s) 711
AoxI GGCC 2 cut(s) 46, 135
ApeKI GCWGC 1 cut(s) 809
ApoI RAATTY 2 cut(s) 719, 1006
AspLEI GCGC 1 cut(s) 833
AsuHPI GGTGA 4 cut(s) 43, 374, 512, 894
AsuNHI GCTAGC 1 cut(s) 605
AvaI CYCGRG 1 cut(s) 711
BaeI ACNNNNGTAYC 2 cut(s) 902, 935
BanI GGYRCC 1 cut(s) 830
BbrPI CACGTG 1 cut(s) 259
BbvI GCAGC 1 cut(s) 796
BccI CCATC 2 cut(s) 50, 564
BceAI ACGGC 1 cut(s) 844
BcgI CGANNNNNNTGC 2 cut(s) 490, 524
BciT130I CCWGG 2 cut(s) 687, 986
BciVI GTATCC 3 cut(s) 941, 958, 1026
BcoDI GTCTC 1 cut(s) 629
BfaI CTAG 3 cut(s) 204, 386, 606
BfmI CTRYAG 2 cut(s) 309, 496
BfoI RGCGCY 1 cut(s) 834
BfuI GTATCC 3 cut(s) 941, 958, 1026
BisI GCNGC 2 cut(s) 116, 810
BlsI GCNGC 2 cut(s) 117, 811
BmcAI AGTACT 1 cut(s) 851
Bme1390I CCNGG 2 cut(s) 687, 986
BmeT110I CYCGRG 1 cut(s) 711
BmiI GGNNCC 4 cut(s) 36, 286, 533, 832
BmrFI CCNGG 2 cut(s) 687, 986
BmsI GCATC 2 cut(s) 173, 193
BmtI GCTAGC 1 cut(s) 609
BpmI CTGGAG 2 cut(s) 669, 935
BsaAI YACGTR 1 cut(s) 259
BsaHI GRCGYC 1 cut(s) 831
BsaJI CCNNGG 4 cut(s) 321, 535, 686, 838
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 259, 730
Bse1I ACTGG 2 cut(s) 893, 918
BseBI CCWGG 2 cut(s) 687, 986
BseDI CCNNGG 4 cut(s) 321, 535, 686, 838
BseGI GGATG 3 cut(s) 164, 303, 575
BseLI CCNNNNNNNGG 3 cut(s) 44, 259, 730
BseMII CTCAG 3 cut(s) 752, 897, 1052
BseNI ACTGG 2 cut(s) 893, 918
BseRI GAGGAG 4 cut(s) 89, 225, 550, 1026
BseXI GCAGC 1 cut(s) 796
BseYI CCCAGC 1 cut(s) 398
BshFI GGCC 2 cut(s) 48, 137
BshNI GGYRCC 1 cut(s) 830
BsiHKCI CYCGRG 1 cut(s) 711
BsiSI CCGG 3 cut(s) 138, 159, 171
BslFI GGGAC 1 cut(s) 566
BslI CCNNNNNNNGG 3 cut(s) 44, 259, 730
BsmAI GTCTC 1 cut(s) 629
BsmFI GGGAC 1 cut(s) 566
BsnI GGCC 2 cut(s) 48, 137
BsoBI CYCGRG 1 cut(s) 711
Bsp143I GATC 6 cut(s) 379, 543, 751, 947, 981, 1031
BspACI CCGC 3 cut(s) 116, 340, 961
BspANI GGCC 2 cut(s) 48, 137
BspCNI CTCAG 3 cut(s) 753, 898, 1051
BspLI GGNNCC 4 cut(s) 36, 286, 533, 832
BspMAI CTGCAG 1 cut(s) 313
BspOI GCTAGC 1 cut(s) 609
BspPI GGATC 3 cut(s) 387, 551, 976
BspQI GCTCTTC 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 830
BsrBI CCGCTC 1 cut(s) 961
BsrI ACTGG 2 cut(s) 893, 918
BssECI CCNNGG 4 cut(s) 321, 535, 686, 838
BssMI GATC 6 cut(s) 379, 543, 751, 947, 981, 1031
BssNI GRCGYC 1 cut(s) 831
BssT1I CCWWGG 3 cut(s) 321, 535, 838
Bst2UI CCWGG 2 cut(s) 687, 986
Bst4CI ACNGT 2 cut(s) 358, 859
Bst6I CTCTTC 3 cut(s) 68, 202, 232
BstACI GRCGYC 1 cut(s) 831
BstBAI YACGTR 1 cut(s) 259
BstC8I GCNNGC 4 cut(s) 182, 265, 607, 835
BstDEI CTNAG 6 cut(s) 448, 590, 761, 906, 971, 1038
BstENI CCTNNNNNAGG 1 cut(s) 728
BstF5I GGATG 3 cut(s) 164, 303, 575
BstH2I RGCGCY 1 cut(s) 834
BstHHI GCGC 1 cut(s) 833
BstKTI GATC 6 cut(s) 382, 546, 754, 950, 984, 1034
BstMAI GTCTC 1 cut(s) 629
BstMBI GATC 6 cut(s) 379, 543, 751, 947, 981, 1031
BstMWI GCNNNNNNNGC 7 cut(s) 221, 230, 269, 404, 563, 793, 815
BstNI CCWGG 2 cut(s) 687, 986
BstNSI RCATGY 2 cut(s) 421, 598
BstSCI CCNGG 2 cut(s) 685, 984
BstSFI CTRYAG 2 cut(s) 309, 496
BstV1I GCAGC 1 cut(s) 796
BstX2I RGATCY 1 cut(s) 981
BstYI RGATCY 1 cut(s) 981
BsuI GTATCC 3 cut(s) 941, 958, 1026
BsuRI GGCC 2 cut(s) 48, 137
BtgZI GCGATG 1 cut(s) 139
BtsCI GGATG 3 cut(s) 164, 303, 575
BtsI GCAGTG 1 cut(s) 624
BtsIMutI CAGTG 3 cut(s) 363, 624, 1051
Cac8I GCNNGC 4 cut(s) 182, 265, 607, 835
CfoI GCGC 1 cut(s) 833
Csp6I GTAC 5 cut(s) 149, 199, 791, 850, 860
CviAII CATG 4 cut(s) 274, 418, 595, 659
CviQI GTAC 5 cut(s) 149, 199, 791, 850, 860
DdeI CTNAG 6 cut(s) 448, 590, 761, 906, 971, 1038
DinI GGCGCC 1 cut(s) 832
DpnI GATC 6 cut(s) 381, 545, 753, 949, 983, 1033
DpnII GATC 6 cut(s) 379, 543, 751, 947, 981, 1031
DraIII CACNNNGTG 1 cut(s) 388
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 3 cut(s) 68, 202, 232
EarI CTCTTC 3 cut(s) 68, 202, 232
Eco130I CCWWGG 3 cut(s) 321, 535, 838
Eco32I GATATC 1 cut(s) 7
Eco72I CACGTG 1 cut(s) 259
Eco88I CYCGRG 1 cut(s) 711
EcoNI CCTNNNNNAGG 1 cut(s) 728
EcoRII CCWGG 2 cut(s) 685, 984
EcoRV GATATC 1 cut(s) 7
EcoT14I CCWWGG 3 cut(s) 321, 535, 838
EgeI GGCGCC 1 cut(s) 832
EheI GGCGCC 1 cut(s) 832
ErhI CCWWGG 3 cut(s) 321, 535, 838
FaeI CATG 4 cut(s) 277, 421, 598, 662
FalI AAGNNNNNCTT 2 cut(s) 199, 231
FaqI GGGAC 1 cut(s) 566
FatI CATG 4 cut(s) 273, 417, 594, 658
FauI CCCGC 1 cut(s) 954
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 2 cut(s) 116, 810
FokI GGATG 3 cut(s) 151, 290, 582
Fsp4HI GCNGC 2 cut(s) 116, 810
FspBI CTAG 3 cut(s) 204, 386, 606
GlaI GCGC 1 cut(s) 832
GluI GCNGC 2 cut(s) 116, 810
GsaI CCCAGC 1 cut(s) 402
GsuI CTGGAG 2 cut(s) 669, 935
HaeII RGCGCY 1 cut(s) 834
HaeIII GGCC 2 cut(s) 48, 137
HapII CCGG 3 cut(s) 138, 159, 171
HhaI GCGC 1 cut(s) 833
Hin1I GRCGYC 1 cut(s) 831
Hin1II CATG 4 cut(s) 277, 421, 598, 662
Hin6I GCGC 1 cut(s) 831
HinP1I GCGC 1 cut(s) 831
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HindIII AAGCTT 2 cut(s) 625, 778
HinfI GANTC 5 cut(s) 249, 361, 682, 698, 709
HpaI GTTAAC 1 cut(s) 442
HpaII CCGG 3 cut(s) 138, 159, 171
HphI GGTGA 4 cut(s) 43, 374, 512, 894
Hpy166II GTNNAC 3 cut(s) 442, 496, 826
Hpy188I TCNGA 2 cut(s) 703, 1041
Hpy188III TCNNGA 5 cut(s) 125, 434, 755, 951, 1019
Hpy8I GTNNAC 3 cut(s) 442, 496, 826
HpyAV CCTTC 2 cut(s) 728, 886
HpyCH4III ACNGT 2 cut(s) 358, 859
HpyCH4IV ACGT 2 cut(s) 132, 258
HpyCH4V TGCA 2 cut(s) 311, 417
HpyF10VI GCNNNNNNNGC 7 cut(s) 221, 230, 269, 404, 563, 793, 815
HpyF3I CTNAG 6 cut(s) 448, 590, 761, 906, 971, 1038
HpySE526I ACGT 2 cut(s) 132, 258
Hsp92I GRCGYC 1 cut(s) 831
Hsp92II CATG 4 cut(s) 277, 421, 598, 662
HspAI GCGC 1 cut(s) 831
KasI GGCGCC 1 cut(s) 830
KspAI GTTAAC 1 cut(s) 442
Kzo9I GATC 6 cut(s) 379, 543, 751, 947, 981, 1031
LguI GCTCTTC 1 cut(s) 68
LmnI GCTCC 6 cut(s) 161, 212, 290, 372, 412, 531
Lsp1109I GCAGC 1 cut(s) 796
LweI GCATC 2 cut(s) 173, 193
MaeI CTAG 3 cut(s) 204, 386, 606
MaeII ACGT 2 cut(s) 132, 258
MaeIII GTNAC 3 cut(s) 335, 352, 679
MalI GATC 6 cut(s) 381, 545, 753, 949, 983, 1033
MbiI CCGCTC 1 cut(s) 961
MboI GATC 6 cut(s) 379, 543, 751, 947, 981, 1031
MboII GAAGA 7 cut(s) 55, 219, 249, 341, 437, 991, 1015
MfeI CAATTG 2 cut(s) 675, 819
MflI RGATCY 1 cut(s) 981
MluCI AATT 8 cut(s) 465, 513, 651, 675, 719, 819, 1006, 1026
Mly113I GGCGCC 1 cut(s) 831
MlyI GAGTC 3 cut(s) 243, 676, 703
MmeI TCCRAC 2 cut(s) 277, 646
MseI TTAA 4 cut(s) 441, 525, 782, 873
MspA1I CMGCKG 1 cut(s) 118
MspI CCGG 3 cut(s) 138, 159, 171
MspR9I CCNGG 2 cut(s) 687, 986
MunI CAATTG 2 cut(s) 675, 819
MvaI CCWGG 2 cut(s) 687, 986
MwoI GCNNNNNNNGC 7 cut(s) 221, 230, 269, 404, 563, 793, 815
NarI GGCGCC 1 cut(s) 831
NdeII GATC 6 cut(s) 379, 543, 751, 947, 981, 1031
NheI GCTAGC 1 cut(s) 605
NlaIII CATG 4 cut(s) 277, 421, 598, 662
NlaIV GGNNCC 4 cut(s) 36, 286, 533, 832
NmuCI GTSAC 1 cut(s) 679
NspI RCATGY 2 cut(s) 421, 598
PaeR7I CTCGAG 1 cut(s) 711
PciSI GCTCTTC 1 cut(s) 68
PfeI GAWTC 2 cut(s) 361, 698
PflMI CCANNNNNTGG 1 cut(s) 259
PfoI TCCNGGA 1 cut(s) 984
PkrI GCNGC 2 cut(s) 117, 811
PleI GAGTC 3 cut(s) 243, 676, 703
PluTI GGCGCC 1 cut(s) 834
PmaCI CACGTG 1 cut(s) 259
PmlI CACGTG 1 cut(s) 259
PpsI GAGTC 3 cut(s) 243, 676, 703
Ppu21I YACGTR 1 cut(s) 259
Psp6I CCWGG 2 cut(s) 685, 984
PspCI CACGTG 1 cut(s) 259
PspFI CCCAGC 1 cut(s) 398
PspGI CCWGG 2 cut(s) 685, 984
PspN4I GGNNCC 4 cut(s) 36, 286, 533, 832
PspXI VCTCGAGB 1 cut(s) 711
PstI CTGCAG 1 cut(s) 313
PsuI RGATCY 1 cut(s) 981
RsaI GTAC 5 cut(s) 150, 200, 792, 851, 861
RsaNI GTAC 5 cut(s) 149, 199, 791, 850, 860
SapI GCTCTTC 1 cut(s) 68
SaqAI TTAA 4 cut(s) 441, 525, 782, 873
SatI GCNGC 2 cut(s) 116, 810
Sau3AI GATC 6 cut(s) 379, 543, 751, 947, 981, 1031
ScaI AGTACT 1 cut(s) 851
SchI GAGTC 3 cut(s) 243, 676, 703
ScrFI CCNGG 2 cut(s) 687, 986
SfaNI GCATC 2 cut(s) 173, 193
SfcI CTRYAG 2 cut(s) 309, 496
SfoI GGCGCC 1 cut(s) 832
Sfr274I CTCGAG 1 cut(s) 711
SlaI CTCGAG 1 cut(s) 711
SmlI CTYRAG 1 cut(s) 711
SmoI CTYRAG 1 cut(s) 711
Sse9I AATT 8 cut(s) 465, 513, 651, 675, 719, 819, 1006, 1026
SsiI CCGC 3 cut(s) 116, 340, 961
SspDI GGCGCC 1 cut(s) 830
SspMI CTAG 3 cut(s) 204, 386, 606
StyD4I CCNGG 2 cut(s) 685, 984
StyI CCWWGG 3 cut(s) 321, 535, 838
TaaI ACNGT 2 cut(s) 358, 859
TaiI ACGT 2 cut(s) 135, 261
TaqI TCGA 6 cut(s) 278, 348, 696, 712, 739, 1030
TasI AATT 8 cut(s) 465, 513, 651, 675, 719, 819, 1006, 1026
TatI WGTACW 2 cut(s) 790, 849
TauI GCSGC 1 cut(s) 118
TfiI GAWTC 2 cut(s) 361, 698
Tru1I TTAA 4 cut(s) 441, 525, 782, 873
Tru9I TTAA 4 cut(s) 441, 525, 782, 873
TscAI CASTG 2 cut(s) 363, 624
TseFI GTSAC 1 cut(s) 679
TseI GCWGC 1 cut(s) 809
Tsp45I GTSAC 1 cut(s) 679
TspDTI ATGAA 1 cut(s) 675
TspGWI ACGGA 1 cut(s) 544
TspRI CASTG 2 cut(s) 363, 624
Van91I CCANNNNNTGG 1 cut(s) 259
XagI CCTNNNNNAGG 1 cut(s) 728
XapI RAATTY 2 cut(s) 719, 1006
XceI RCATGY 2 cut(s) 421, 598
XhoI CTCGAG 1 cut(s) 711
XmiI GTMKAC 1 cut(s) 495
XspI CTAG 3 cut(s) 204, 386, 606
ZrmI AGTACT 1 cut(s) 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.