RLG00000004601

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0014930
Physical Location & Seq
Forward (+)
60635667 .. 60637260
1594 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004601

Sequence Viewer

Length: 1047 bp
ATGGATATCATCAACACACTACTAAACATTGTGGTTCCTCCCATCGGCCTCACCTCGCTGCTCTTCTTTCTGCCACCATATCTGTTTTTCAAGTTTCTCCTCTCAACCATAAAGCCGCTGTTTCGCGAAAACGTGGCCGGAAAAGTCGTACTCATCGCCGGAGCATCCTCCGGTATAGGCGAGCATCTGGCATACGAGTACGCTAGAAGAGGAGCTTGCCTTGCTCTTGTTGCCAGAAGAGAACACCGACTCCAACACGTGGCGAGCAGAGCCATGTCGATTGGCTCCCCAGATGTTCTCATCATCCCTGCAGATGTTTCCAAGGTTGAAGATTGTAACCGCTTTGTCGATGTAACAGTGAATCATTTTGGGCGCTTGGACCACCTAGTGAATAATGCTGGGATTGCTCCTATCTGCATGTTTGAAGAAACTCCTGATGTTAACAACTTAGCACCCGCTATGGACATAAACTTTTGGGGTTCAGTATACAGCACCTACTTCGCGATTCCTCACCTTAAACGGAGCCAAGGGAGGATCGTAGGGGTCGCCTCCTCTGCTGGATGGTTGCGTGTCCCACGACTAAGCATGTATAGTGCTAGCAAAACAGCAGTGATAAGCTTTTATGAGACATTGAGAGTTGAAATTGGGGATGAAGTTGGAATAACAATTGTGACACCAGGGCTTATCGAATCAGAAATGACTCAAGGCAAATTCCTAAACAAGGAAGGCCGATTGGTATTAGATCAAGAACTGAGAGATGCTGAAGTAAGCTTAATGCCTGTACTGCCTGTCAAAGAAGCTGCCGAAGCAATTGTGGACGGCGCCTGCCAAGGAGAAAATTACTTGACAGTACCAGCTTGGGTTAAGCAGTCATTTTACTGGAAGGTGTTTTCACCTGAGATACTGGAGTGGGGTAATCGTATCCTGCTAATGAGCAGATCAGGAGATGAGAGGGATACACTAAGCAAGAAGATCCTGGACATTTCTGGCTTGAAGGATTTGGTGTATCCAGACACAATTCGATCTCCTCGGATTAGAGAACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

349

Amino Acids

38.7

Weight (kDa)

6.2

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 48 - 238 1.1e-45 short chain dehydrogenase
adh_short_C2 PF13561 54 - 236 4.9e-30 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014930)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50770
fragaria_vesca FvH4_5g08730
malus_domestica MD14G1152800.v1.1
prunus_persica Prupe.5G147800_v2.0.a1
pyrus_communis pycom14g12720 pycom14g12730
rosa_chinensis RchiOBHm_Chr7g0189551
rosa_laevigata RLG00000004601
rosa_multiflora Rmu_sc0001924.1_g000012
rosa_roxburghii Rroxscaffold_3G00265310
rosa_rugosa Rorug06G0498900
rosa_samantha Rh7AG103900 Rh7BG106600 Rh7CG108700 Rh7DG106000
rosa_wichuraiana Rw7G008970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 821
AccB7I CCANNNNNTGG 1 cut(s) 259
AccI GTMKAC 1 cut(s) 486
AccII CGCG 2 cut(s) 126, 503
AciI CCGC 3 cut(s) 116, 340, 456
AclWI GGATC 2 cut(s) 542, 967
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 1 cut(s) 710
AcuI CTGAAG 1 cut(s) 783
AcvI CACGTG 1 cut(s) 259
AcyI GRCGYC 1 cut(s) 822
AdeI CACNNNGTG 1 cut(s) 388
AfaI GTAC 4 cut(s) 150, 200, 783, 852
AfiI CCNNNNNNNGG 3 cut(s) 44, 259, 721
AflIII ACRYGT 1 cut(s) 256
AgsI TTSAA 5 cut(s) 91, 329, 425, 641, 994
AjnI CCWGG 2 cut(s) 676, 975
AloI GAACNNNNNNTCC 2 cut(s) 234, 266
AluBI AGCT 5 cut(s) 215, 618, 771, 800, 857
AluI AGCT 5 cut(s) 215, 618, 771, 800, 857
Alw26I GTCTC 1 cut(s) 620
AlwI GGATC 2 cut(s) 542, 967
AoxI GGCC 3 cut(s) 46, 135, 727
ApeKI GCWGC 2 cut(s) 58, 800
ApoI RAATTY 1 cut(s) 710
AspLEI GCGC 2 cut(s) 375, 824
AspS9I GGNCC 1 cut(s) 379
AsuHPI GGTGA 3 cut(s) 43, 503, 885
AsuNHI GCTAGC 1 cut(s) 596
AvaII GGWCC 1 cut(s) 379
BaeI ACNNNNGTAYC 2 cut(s) 893, 926
BanI GGYRCC 1 cut(s) 821
BbrPI CACGTG 1 cut(s) 259
BbvI GCAGC 2 cut(s) 45, 787
BccI CCATC 2 cut(s) 50, 555
BceAI ACGGC 1 cut(s) 835
BcgI CGANNNNNNTGC 2 cut(s) 481, 515
BciT130I CCWGG 2 cut(s) 678, 977
BciVI GTATCC 3 cut(s) 932, 949, 1017
BcoDI GTCTC 1 cut(s) 620
BfaI CTAG 3 cut(s) 204, 386, 597
BfmI CTRYAG 1 cut(s) 309
BfoI RGCGCY 2 cut(s) 376, 825
BfuI GTATCC 3 cut(s) 932, 949, 1017
BisI GCNGC 3 cut(s) 59, 116, 801
BlsI GCNGC 3 cut(s) 60, 117, 802
Bme1390I CCNGG 2 cut(s) 678, 977
Bme18I GGWCC 1 cut(s) 379
BmgT120I GGNCC 1 cut(s) 379
BmiI GGNNCC 4 cut(s) 36, 286, 524, 823
BmrFI CCNGG 2 cut(s) 678, 977
BmsI GCATC 3 cut(s) 173, 193, 748
BmtI GCTAGC 1 cut(s) 600
BpmI CTGGAG 1 cut(s) 926
BpuEI CTTGAG 1 cut(s) 687
BsaAI YACGTR 1 cut(s) 259
BsaHI GRCGYC 1 cut(s) 822
BsaJI CCNNGG 5 cut(s) 321, 526, 677, 829, 1028
BsaWI WCCGGW 1 cut(s) 170
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 259, 721
Bse1I ACTGG 2 cut(s) 884, 909
BseBI CCWGG 2 cut(s) 678, 977
BseDI CCNNGG 5 cut(s) 321, 526, 677, 829, 1028
BseGI GGATG 4 cut(s) 164, 303, 566, 655
BseLI CCNNNNNNNGG 3 cut(s) 44, 259, 721
BseMII CTCAG 2 cut(s) 743, 888
BseNI ACTGG 2 cut(s) 884, 909
BseRI GAGGAG 4 cut(s) 89, 225, 541, 1017
BseXI GCAGC 2 cut(s) 45, 787
BseYI CCCAGC 1 cut(s) 398
Bsh1236I CGCG 2 cut(s) 126, 503
BshFI GGCC 3 cut(s) 48, 137, 729
BshNI GGYRCC 1 cut(s) 821
BsiSI CCGG 3 cut(s) 138, 159, 171
BslFI GGGAC 1 cut(s) 557
BslI CCNNNNNNNGG 3 cut(s) 44, 259, 721
BsmAI GTCTC 1 cut(s) 620
BsmFI GGGAC 1 cut(s) 557
BsnI GGCC 3 cut(s) 48, 137, 729
Bsp143I GATC 5 cut(s) 534, 742, 938, 972, 1022
Bsp68I TCGCGA 2 cut(s) 126, 503
BspACI CCGC 3 cut(s) 116, 340, 456
BspANI GGCC 3 cut(s) 48, 137, 729
BspCNI CTCAG 2 cut(s) 744, 889
BspFNI CGCG 2 cut(s) 126, 503
BspLI GGNNCC 4 cut(s) 36, 286, 524, 823
BspMAI CTGCAG 1 cut(s) 313
BspOI GCTAGC 1 cut(s) 600
BspPI GGATC 2 cut(s) 542, 967
BspQI GCTCTTC 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 821
BsrI ACTGG 2 cut(s) 884, 909
BssECI CCNNGG 5 cut(s) 321, 526, 677, 829, 1028
BssMI GATC 5 cut(s) 534, 742, 938, 972, 1022
BssNAI GTATAC 1 cut(s) 487
BssNI GRCGYC 1 cut(s) 822
BssT1I CCWWGG 3 cut(s) 321, 526, 829
Bst1107I GTATAC 1 cut(s) 487
Bst2UI CCWGG 2 cut(s) 678, 977
Bst4CI ACNGT 2 cut(s) 358, 850
Bst6I CTCTTC 3 cut(s) 68, 202, 232
BstACI GRCGYC 1 cut(s) 822
BstBAI YACGTR 1 cut(s) 259
BstC8I GCNNGC 5 cut(s) 182, 217, 265, 598, 826
BstDEI CTNAG 5 cut(s) 448, 581, 752, 897, 962
BstENI CCTNNNNNAGG 1 cut(s) 719
BstF5I GGATG 4 cut(s) 164, 303, 566, 655
BstFNI CGCG 2 cut(s) 126, 503
BstH2I RGCGCY 2 cut(s) 376, 825
BstHHI GCGC 2 cut(s) 375, 824
BstKTI GATC 5 cut(s) 537, 745, 941, 975, 1025
BstMAI GTCTC 1 cut(s) 620
BstMBI GATC 5 cut(s) 534, 742, 938, 972, 1022
BstMWI GCNNNNNNNGC 7 cut(s) 221, 230, 269, 404, 554, 784, 806
BstNI CCWGG 2 cut(s) 678, 977
BstNSI RCATGY 2 cut(s) 421, 589
BstSCI CCNGG 2 cut(s) 676, 975
BstSFI CTRYAG 1 cut(s) 309
BstUI CGCG 2 cut(s) 126, 503
BstV1I GCAGC 2 cut(s) 45, 787
BstX2I RGATCY 1 cut(s) 972
BstYI RGATCY 1 cut(s) 972
BstZ17I GTATAC 1 cut(s) 487
BsuI GTATCC 3 cut(s) 932, 949, 1017
BsuRI GGCC 3 cut(s) 48, 137, 729
BtgZI GCGATG 1 cut(s) 139
BtsCI GGATG 4 cut(s) 164, 303, 566, 655
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 3 cut(s) 363, 615, 1042
BtuMI TCGCGA 2 cut(s) 126, 503
Cac8I GCNNGC 5 cut(s) 182, 217, 265, 598, 826
CfoI GCGC 2 cut(s) 375, 824
Cfr13I GGNCC 1 cut(s) 379
Csp6I GTAC 4 cut(s) 149, 199, 782, 851
CviAII CATG 3 cut(s) 274, 418, 586
CviQI GTAC 4 cut(s) 149, 199, 782, 851
DdeI CTNAG 5 cut(s) 448, 581, 752, 897, 962
DinI GGCGCC 1 cut(s) 823
DpnI GATC 5 cut(s) 536, 744, 940, 974, 1024
DpnII GATC 5 cut(s) 534, 742, 938, 972, 1022
DraIII CACNNNGTG 1 cut(s) 388
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 3 cut(s) 68, 202, 232
EarI CTCTTC 3 cut(s) 68, 202, 232
Eco130I CCWWGG 3 cut(s) 321, 526, 829
Eco32I GATATC 1 cut(s) 7
Eco47I GGWCC 1 cut(s) 379
Eco57I CTGAAG 1 cut(s) 783
Eco72I CACGTG 1 cut(s) 259
EcoNI CCTNNNNNAGG 1 cut(s) 719
EcoRII CCWGG 2 cut(s) 676, 975
EcoRV GATATC 1 cut(s) 7
EcoT14I CCWWGG 3 cut(s) 321, 526, 829
EgeI GGCGCC 1 cut(s) 823
EheI GGCGCC 1 cut(s) 823
ErhI CCWWGG 3 cut(s) 321, 526, 829
FaeI CATG 3 cut(s) 277, 421, 589
FalI AAGNNNNNCTT 2 cut(s) 199, 231
FaqI GGGAC 1 cut(s) 557
FatI CATG 3 cut(s) 273, 417, 585
FauI CCCGC 1 cut(s) 463
FblI GTMKAC 1 cut(s) 486
Fnu4HI GCNGC 3 cut(s) 59, 116, 801
FokI GGATG 4 cut(s) 151, 290, 573, 662
Fsp4HI GCNGC 3 cut(s) 59, 116, 801
FspBI CTAG 3 cut(s) 204, 386, 597
GlaI GCGC 2 cut(s) 374, 823
GluI GCNGC 3 cut(s) 59, 116, 801
GsaI CCCAGC 1 cut(s) 402
GsuI CTGGAG 1 cut(s) 926
HaeII RGCGCY 2 cut(s) 376, 825
HaeIII GGCC 3 cut(s) 48, 137, 729
HapII CCGG 3 cut(s) 138, 159, 171
HhaI GCGC 2 cut(s) 375, 824
Hin1I GRCGYC 1 cut(s) 822
Hin1II CATG 3 cut(s) 277, 421, 589
Hin6I GCGC 2 cut(s) 373, 822
HinP1I GCGC 2 cut(s) 373, 822
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HindIII AAGCTT 2 cut(s) 616, 769
HinfI GANTC 5 cut(s) 249, 361, 505, 689, 700
HpaI GTTAAC 1 cut(s) 442
HpaII CCGG 3 cut(s) 138, 159, 171
HphI GGTGA 3 cut(s) 43, 503, 885
Hpy166II GTNNAC 3 cut(s) 442, 487, 817
Hpy188I TCNGA 2 cut(s) 694, 1032
Hpy188III TCNNGA 6 cut(s) 125, 434, 502, 746, 942, 1010
Hpy8I GTNNAC 3 cut(s) 442, 487, 817
HpyAV CCTTC 3 cut(s) 719, 877, 988
HpyCH4III ACNGT 2 cut(s) 358, 850
HpyCH4IV ACGT 2 cut(s) 132, 258
HpyCH4V TGCA 2 cut(s) 311, 417
HpyF10VI GCNNNNNNNGC 7 cut(s) 221, 230, 269, 404, 554, 784, 806
HpyF3I CTNAG 5 cut(s) 448, 581, 752, 897, 962
HpySE526I ACGT 2 cut(s) 132, 258
Hsp92I GRCGYC 1 cut(s) 822
Hsp92II CATG 3 cut(s) 277, 421, 589
HspAI GCGC 2 cut(s) 373, 822
KasI GGCGCC 1 cut(s) 821
KspAI GTTAAC 1 cut(s) 442
Kzo9I GATC 5 cut(s) 534, 742, 938, 972, 1022
LguI GCTCTTC 1 cut(s) 68
LmnI GCTCC 5 cut(s) 161, 212, 290, 412, 522
Lsp1109I GCAGC 2 cut(s) 45, 787
LweI GCATC 3 cut(s) 173, 193, 748
MaeI CTAG 3 cut(s) 204, 386, 597
MaeII ACGT 2 cut(s) 132, 258
MaeIII GTNAC 3 cut(s) 335, 352, 670
MalI GATC 5 cut(s) 536, 744, 940, 974, 1024
MboI GATC 5 cut(s) 534, 742, 938, 972, 1022
MboII GAAGA 6 cut(s) 55, 219, 249, 341, 437, 982
MfeI CAATTG 2 cut(s) 666, 810
MflI RGATCY 1 cut(s) 972
MluCI AATT 6 cut(s) 642, 666, 710, 810, 838, 1017
Mly113I GGCGCC 1 cut(s) 822
MlyI GAGTC 2 cut(s) 243, 694
MmeI TCCRAC 2 cut(s) 277, 637
MseI TTAA 4 cut(s) 441, 516, 773, 864
MspA1I CMGCKG 1 cut(s) 118
MspI CCGG 3 cut(s) 138, 159, 171
MspR9I CCNGG 2 cut(s) 678, 977
MunI CAATTG 2 cut(s) 666, 810
MvaI CCWGG 2 cut(s) 678, 977
MvnI CGCG 2 cut(s) 126, 503
MwoI GCNNNNNNNGC 7 cut(s) 221, 230, 269, 404, 554, 784, 806
NarI GGCGCC 1 cut(s) 822
NdeII GATC 5 cut(s) 534, 742, 938, 972, 1022
NheI GCTAGC 1 cut(s) 596
NlaIII CATG 3 cut(s) 277, 421, 589
NlaIV GGNNCC 4 cut(s) 36, 286, 524, 823
NmuCI GTSAC 1 cut(s) 670
NruI TCGCGA 2 cut(s) 126, 503
NspI RCATGY 2 cut(s) 421, 589
PciSI GCTCTTC 1 cut(s) 68
PfeI GAWTC 3 cut(s) 361, 505, 689
PflMI CCANNNNNTGG 1 cut(s) 259
PfoI TCCNGGA 1 cut(s) 975
PkrI GCNGC 3 cut(s) 60, 117, 802
PleI GAGTC 2 cut(s) 243, 694
PluTI GGCGCC 1 cut(s) 825
PmaCI CACGTG 1 cut(s) 259
PmlI CACGTG 1 cut(s) 259
PpsI GAGTC 2 cut(s) 243, 694
Ppu21I YACGTR 1 cut(s) 259
Psp6I CCWGG 2 cut(s) 676, 975
PspCI CACGTG 1 cut(s) 259
PspFI CCCAGC 1 cut(s) 398
PspGI CCWGG 2 cut(s) 676, 975
PspN4I GGNNCC 4 cut(s) 36, 286, 524, 823
PspPI GGNCC 1 cut(s) 379
PstI CTGCAG 1 cut(s) 313
PsuI RGATCY 1 cut(s) 972
RruI TCGCGA 2 cut(s) 126, 503
RsaI GTAC 4 cut(s) 150, 200, 783, 852
RsaNI GTAC 4 cut(s) 149, 199, 782, 851
SapI GCTCTTC 1 cut(s) 68
SaqAI TTAA 4 cut(s) 441, 516, 773, 864
SatI GCNGC 3 cut(s) 59, 116, 801
Sau3AI GATC 5 cut(s) 534, 742, 938, 972, 1022
Sau96I GGNCC 1 cut(s) 379
SchI GAGTC 2 cut(s) 243, 694
ScrFI CCNGG 2 cut(s) 678, 977
SfaNI GCATC 3 cut(s) 173, 193, 748
SfcI CTRYAG 1 cut(s) 309
SfoI GGCGCC 1 cut(s) 823
SinI GGWCC 1 cut(s) 379
SmlI CTYRAG 1 cut(s) 702
SmoI CTYRAG 1 cut(s) 702
Sse9I AATT 6 cut(s) 642, 666, 710, 810, 838, 1017
SsiI CCGC 3 cut(s) 116, 340, 456
SspDI GGCGCC 1 cut(s) 821
SspMI CTAG 3 cut(s) 204, 386, 597
StyD4I CCNGG 2 cut(s) 676, 975
StyI CCWWGG 3 cut(s) 321, 526, 829
TaaI ACNGT 2 cut(s) 358, 850
TaiI ACGT 2 cut(s) 135, 261
TaqI TCGA 4 cut(s) 278, 348, 687, 1021
TasI AATT 6 cut(s) 642, 666, 710, 810, 838, 1017
TatI WGTACW 1 cut(s) 781
TauI GCSGC 1 cut(s) 118
TfiI GAWTC 3 cut(s) 361, 505, 689
Tru1I TTAA 4 cut(s) 441, 516, 773, 864
Tru9I TTAA 4 cut(s) 441, 516, 773, 864
TscAI CASTG 2 cut(s) 363, 615
TseFI GTSAC 1 cut(s) 670
TseI GCWGC 2 cut(s) 58, 800
Tsp45I GTSAC 1 cut(s) 670
TspDTI ATGAA 1 cut(s) 666
TspGWI ACGGA 1 cut(s) 535
TspRI CASTG 2 cut(s) 363, 615
Van91I CCANNNNNTGG 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 379
XagI CCTNNNNNAGG 1 cut(s) 719
XapI RAATTY 1 cut(s) 710
XceI RCATGY 2 cut(s) 421, 589
XmiI GTMKAC 1 cut(s) 486
XspI CTAG 3 cut(s) 204, 386, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.