Rh7CG108700

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0014930
Physical Location & Seq
Reverse (-)
8366543 .. 8367565
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG108700.1

Sequence Viewer

Length: 606 bp
ATGTCGATTGGCTCCCCAGATGTTCTCATCATCCCTGCAGATGTTTCCAAGGTTGAAGATTGTAACCGCTTTGTCGATGTAACAGTGAATCATTTTGGGCGCTTGGATCACCTAGTGAATAATGCTGGGATTGCTCCTATCTGCACGTTTGAAGAAACTCCTGATGTTAACAACTTAGCACCAGCTATGGACATAAACTTTTGGGGTTCAGTCTACAGCACCTACTTCGCAATTCCTCACCTTAAACGGAGCCAAGGGAGGATCGCAGGGGTCGCCTCCTCTGCTGGATGGTTGCGTGTCCCACGACTAAGCATGTATAGTGCTAGCAAAACAGCAGTGATAAGCTTTTATGAGACATTGAGGGTTGAAATTGGGGATGAAGTTGGAATAACAATTGTGACTCCAGGGCTTATCGAATCAGAAATGACTCGAGGCAAATTCCTAAACAAGGAAGGCCGATTGGTATTAGATCAAGAACTGAGAGATGCTGAAGTAAGCTTAATGCCTGTACTGCCTGTCAAAGAAGCTGCCGAAGCAATTGTGGACGGCGATTGTGGACGGCGCCTGCCAAGGAGAAAAGTACTTGACAGTACCAGCTTGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

201

Amino Acids

21.97

Weight (kDa)

5.26

Isoelectric Point (pI)

44.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 6 - 146 3.2e-31 short chain dehydrogenase
adh_short_C2 PF13561 10 - 145 1.8e-21 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014930)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50770
fragaria_vesca FvH4_5g08730
malus_domestica MD14G1152800.v1.1
prunus_persica Prupe.5G147800_v2.0.a1
pyrus_communis pycom14g12720 pycom14g12730
rosa_chinensis RchiOBHm_Chr7g0189551
rosa_laevigata RLG00000004601
rosa_multiflora Rmu_sc0001924.1_g000012
rosa_roxburghii Rroxscaffold_3G00265310
rosa_rugosa Rorug06G0498900
rosa_samantha Rh7AG103900 Rh7BG106600 Rh7CG108700 Rh7DG106000
rosa_wichuraiana Rw7G008970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 561
AccI GTMKAC 1 cut(s) 213
AciI CCGC 1 cut(s) 67
AclWI GGATC 2 cut(s) 114, 269
AcsI RAATTY 1 cut(s) 437
AcuI CTGAAG 1 cut(s) 510
AcyI GRCGYC 1 cut(s) 562
AdeI CACNNNGTG 1 cut(s) 115
AfaI GTAC 3 cut(s) 510, 582, 592
AfiI CCNNNNNNNGG 1 cut(s) 448
AgsI TTSAA 3 cut(s) 56, 152, 368
AjnI CCWGG 1 cut(s) 403
AluBI AGCT 5 cut(s) 185, 345, 498, 527, 597
AluI AGCT 5 cut(s) 185, 345, 498, 527, 597
Alw26I GTCTC 1 cut(s) 347
AlwI GGATC 2 cut(s) 114, 269
Ama87I CYCGRG 1 cut(s) 429
AoxI GGCC 1 cut(s) 454
ApeKI GCWGC 1 cut(s) 527
ApoI RAATTY 1 cut(s) 437
AspLEI GCGC 2 cut(s) 102, 564
AsuHPI GGTGA 2 cut(s) 101, 230
AsuNHI GCTAGC 1 cut(s) 323
AvaI CYCGRG 1 cut(s) 429
BanI GGYRCC 1 cut(s) 561
BbvI GCAGC 1 cut(s) 514
BccI CCATC 1 cut(s) 282
BceAI ACGGC 2 cut(s) 562, 575
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 1 cut(s) 405
BcoDI GTCTC 1 cut(s) 347
BfaI CTAG 2 cut(s) 113, 324
BfmI CTRYAG 2 cut(s) 36, 214
BfoI RGCGCY 2 cut(s) 103, 565
BisI GCNGC 1 cut(s) 528
BlsI GCNGC 1 cut(s) 529
BmcAI AGTACT 1 cut(s) 582
Bme1390I CCNGG 1 cut(s) 405
BmeT110I CYCGRG 1 cut(s) 429
BmiI GGNNCC 3 cut(s) 13, 251, 563
BmrFI CCNGG 1 cut(s) 405
BmsI GCATC 1 cut(s) 475
BmtI GCTAGC 1 cut(s) 327
BpmI CTGGAG 1 cut(s) 387
BsaHI GRCGYC 1 cut(s) 562
BsaJI CCNNGG 4 cut(s) 48, 253, 404, 569
Bsc4I CCNNNNNNNGG 1 cut(s) 448
BseBI CCWGG 1 cut(s) 405
BseDI CCNNGG 4 cut(s) 48, 253, 404, 569
BseGI GGATG 3 cut(s) 30, 293, 382
BseLI CCNNNNNNNGG 1 cut(s) 448
BseMII CTCAG 1 cut(s) 470
BseRI GAGGAG 1 cut(s) 268
BseXI GCAGC 1 cut(s) 514
BseYI CCCAGC 1 cut(s) 125
BsgI GTGCAG 1 cut(s) 127
BshFI GGCC 1 cut(s) 456
BshNI GGYRCC 1 cut(s) 561
BsiHKCI CYCGRG 1 cut(s) 429
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 448
BsmAI GTCTC 1 cut(s) 347
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 1 cut(s) 456
BsoBI CYCGRG 1 cut(s) 429
Bsp143I GATC 3 cut(s) 106, 261, 469
BspACI CCGC 1 cut(s) 67
BspANI GGCC 1 cut(s) 456
BspCNI CTCAG 1 cut(s) 471
BspLI GGNNCC 3 cut(s) 13, 251, 563
BspMAI CTGCAG 1 cut(s) 40
BspOI GCTAGC 1 cut(s) 327
BspPI GGATC 2 cut(s) 114, 269
BspT107I GGYRCC 1 cut(s) 561
BssECI CCNNGG 4 cut(s) 48, 253, 404, 569
BssMI GATC 3 cut(s) 106, 261, 469
BssNI GRCGYC 1 cut(s) 562
BssT1I CCWWGG 3 cut(s) 48, 253, 569
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 2 cut(s) 85, 590
BstACI GRCGYC 1 cut(s) 562
BstC8I GCNNGC 2 cut(s) 325, 566
BstDEI CTNAG 3 cut(s) 175, 308, 479
BstENI CCTNNNNNAGG 1 cut(s) 446
BstF5I GGATG 3 cut(s) 30, 293, 382
BstH2I RGCGCY 2 cut(s) 103, 565
BstHHI GCGC 2 cut(s) 102, 564
BstKTI GATC 3 cut(s) 109, 264, 472
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 3 cut(s) 106, 261, 469
BstMWI GCNNNNNNNGC 5 cut(s) 131, 272, 281, 511, 533
BstNI CCWGG 1 cut(s) 405
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 403
BstSFI CTRYAG 2 cut(s) 36, 214
BstV1I GCAGC 1 cut(s) 514
BsuRI GGCC 1 cut(s) 456
BtsCI GGATG 3 cut(s) 30, 293, 382
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 2 cut(s) 90, 342
Cac8I GCNNGC 2 cut(s) 325, 566
CfoI GCGC 2 cut(s) 102, 564
Csp6I GTAC 3 cut(s) 509, 581, 591
CviAII CATG 1 cut(s) 313
CviJI RGCY 9 cut(s) 12, 185, 252, 345, 409, 456, 498, 527, 597
CviKI_1 RGCY 9 cut(s) 12, 185, 252, 345, 409, 456, 498, 527, 597
CviQI GTAC 3 cut(s) 509, 581, 591
DdeI CTNAG 3 cut(s) 175, 308, 479
DinI GGCGCC 1 cut(s) 563
DpnI GATC 3 cut(s) 108, 263, 471
DpnII GATC 3 cut(s) 106, 261, 469
DraIII CACNNNGTG 1 cut(s) 115
Eco130I CCWWGG 3 cut(s) 48, 253, 569
Eco57I CTGAAG 1 cut(s) 510
Eco88I CYCGRG 1 cut(s) 429
EcoNI CCTNNNNNAGG 1 cut(s) 446
EcoRII CCWGG 1 cut(s) 403
EcoT14I CCWWGG 3 cut(s) 48, 253, 569
EgeI GGCGCC 1 cut(s) 563
EheI GGCGCC 1 cut(s) 563
ErhI CCWWGG 3 cut(s) 48, 253, 569
FaeI CATG 1 cut(s) 316
FaiI YATR 5 cut(s) 188, 194, 314, 318, 351
FaqI GGGAC 1 cut(s) 284
FatI CATG 1 cut(s) 312
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 1 cut(s) 528
FokI GGATG 3 cut(s) 17, 300, 389
Fsp4HI GCNGC 1 cut(s) 528
FspBI CTAG 2 cut(s) 113, 324
GlaI GCGC 2 cut(s) 101, 563
GluI GCNGC 1 cut(s) 528
GsaI CCCAGC 1 cut(s) 129
GsuI CTGGAG 1 cut(s) 387
HaeII RGCGCY 2 cut(s) 103, 565
HaeIII GGCC 1 cut(s) 456
HhaI GCGC 2 cut(s) 102, 564
Hin1I GRCGYC 1 cut(s) 562
Hin1II CATG 1 cut(s) 316
Hin6I GCGC 2 cut(s) 100, 562
HinP1I GCGC 2 cut(s) 100, 562
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HindIII AAGCTT 2 cut(s) 343, 496
HinfI GANTC 4 cut(s) 88, 400, 416, 427
HpaI GTTAAC 1 cut(s) 169
HphI GGTGA 2 cut(s) 101, 230
Hpy166II GTNNAC 4 cut(s) 169, 214, 544, 557
Hpy188I TCNGA 1 cut(s) 421
Hpy188III TCNNGA 2 cut(s) 161, 473
Hpy8I GTNNAC 4 cut(s) 169, 214, 544, 557
HpyAV CCTTC 1 cut(s) 446
HpyCH4III ACNGT 2 cut(s) 85, 590
HpyCH4IV ACGT 1 cut(s) 146
HpyCH4V TGCA 2 cut(s) 38, 144
HpyF10VI GCNNNNNNNGC 5 cut(s) 131, 272, 281, 511, 533
HpyF3I CTNAG 3 cut(s) 175, 308, 479
HpySE526I ACGT 1 cut(s) 146
Hsp92I GRCGYC 1 cut(s) 562
Hsp92II CATG 1 cut(s) 316
HspAI GCGC 2 cut(s) 100, 562
KasI GGCGCC 1 cut(s) 561
KspAI GTTAAC 1 cut(s) 169
Kzo9I GATC 3 cut(s) 106, 261, 469
LmnI GCTCC 3 cut(s) 17, 139, 249
Lsp1109I GCAGC 1 cut(s) 514
LweI GCATC 1 cut(s) 475
MaeI CTAG 2 cut(s) 113, 324
MaeII ACGT 1 cut(s) 146
MaeIII GTNAC 3 cut(s) 62, 79, 397
MalI GATC 3 cut(s) 108, 263, 471
MboI GATC 3 cut(s) 106, 261, 469
MboII GAAGA 2 cut(s) 68, 164
MfeI CAATTG 2 cut(s) 393, 537
MluCI AATT 5 cut(s) 231, 369, 393, 437, 537
Mly113I GGCGCC 1 cut(s) 562
MlyI GAGTC 2 cut(s) 394, 421
MmeI TCCRAC 1 cut(s) 364
MnlI CCTC 6 cut(s) 246, 252, 286, 289, 354, 425
MseI TTAA 4 cut(s) 168, 243, 500, 604
MspR9I CCNGG 1 cut(s) 405
MunI CAATTG 2 cut(s) 393, 537
MvaI CCWGG 1 cut(s) 405
MwoI GCNNNNNNNGC 5 cut(s) 131, 272, 281, 511, 533
NarI GGCGCC 1 cut(s) 562
NdeII GATC 3 cut(s) 106, 261, 469
NheI GCTAGC 1 cut(s) 323
NlaIII CATG 1 cut(s) 316
NlaIV GGNNCC 3 cut(s) 13, 251, 563
NmuCI GTSAC 1 cut(s) 397
NspI RCATGY 1 cut(s) 316
PaeR7I CTCGAG 1 cut(s) 429
PfeI GAWTC 2 cut(s) 88, 416
PkrI GCNGC 1 cut(s) 529
PleI GAGTC 2 cut(s) 394, 421
PluTI GGCGCC 1 cut(s) 565
PpsI GAGTC 2 cut(s) 394, 421
Psp6I CCWGG 1 cut(s) 403
PspFI CCCAGC 1 cut(s) 125
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 3 cut(s) 13, 251, 563
PspXI VCTCGAGB 1 cut(s) 429
PstI CTGCAG 1 cut(s) 40
RsaI GTAC 3 cut(s) 510, 582, 592
RsaNI GTAC 3 cut(s) 509, 581, 591
SaqAI TTAA 4 cut(s) 168, 243, 500, 604
SatI GCNGC 1 cut(s) 528
Sau3AI GATC 3 cut(s) 106, 261, 469
ScaI AGTACT 1 cut(s) 582
SchI GAGTC 2 cut(s) 394, 421
ScrFI CCNGG 1 cut(s) 405
SfaNI GCATC 1 cut(s) 475
SfcI CTRYAG 2 cut(s) 36, 214
SfoI GGCGCC 1 cut(s) 563
Sfr274I CTCGAG 1 cut(s) 429
SlaI CTCGAG 1 cut(s) 429
SmlI CTYRAG 1 cut(s) 429
SmoI CTYRAG 1 cut(s) 429
Sse9I AATT 5 cut(s) 231, 369, 393, 437, 537
SsiI CCGC 1 cut(s) 67
SspDI GGCGCC 1 cut(s) 561
SspMI CTAG 2 cut(s) 113, 324
StyD4I CCNGG 1 cut(s) 403
StyI CCWWGG 3 cut(s) 48, 253, 569
TaaI ACNGT 2 cut(s) 85, 590
TaiI ACGT 1 cut(s) 149
TaqI TCGA 4 cut(s) 5, 75, 414, 430
TasI AATT 5 cut(s) 231, 369, 393, 437, 537
TatI WGTACW 2 cut(s) 508, 580
TfiI GAWTC 2 cut(s) 88, 416
Tru1I TTAA 4 cut(s) 168, 243, 500, 604
Tru9I TTAA 4 cut(s) 168, 243, 500, 604
TscAI CASTG 2 cut(s) 90, 342
TseFI GTSAC 1 cut(s) 397
TseI GCWGC 1 cut(s) 527
Tsp45I GTSAC 1 cut(s) 397
TspDTI ATGAA 1 cut(s) 393
TspGWI ACGGA 1 cut(s) 262
TspRI CASTG 2 cut(s) 90, 342
XagI CCTNNNNNAGG 1 cut(s) 446
XapI RAATTY 1 cut(s) 437
XceI RCATGY 1 cut(s) 316
XhoI CTCGAG 1 cut(s) 429
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 2 cut(s) 113, 324
ZrmI AGTACT 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.